Btab011555.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- ZNF341
- Assembly
- GCA_903994105.1
- Location
- NW:43964-60798[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0029 0.13 12.4 2.5 1 23 62 84 62 84 0.98 2 16 5.5 2.5e+02 2.1 0.4 3 23 245 265 244 265 0.81 3 16 6.4e-05 0.0029 17.6 1.7 3 23 273 293 271 293 0.91 4 16 0.00071 0.032 14.3 0.3 2 23 308 329 308 329 0.97 5 16 1.5 67 3.9 1.2 1 23 335 359 335 359 0.95 6 16 5.6e-05 0.0025 17.8 1.0 3 23 364 385 362 385 0.95 7 16 1.2e-05 0.00053 19.9 0.6 2 23 425 446 424 446 0.97 8 16 2.9e-05 0.0013 18.7 1.1 1 23 452 474 452 474 0.96 9 16 0.92 41 4.5 0.5 3 23 505 525 503 525 0.95 10 16 0.00053 0.024 14.7 3.9 1 23 561 583 561 583 0.96 11 16 0.00011 0.0051 16.8 3.5 1 23 595 619 595 619 0.92 12 16 0.02 0.89 9.8 1.7 3 23 623 643 621 643 0.95 13 16 4.8e-06 0.00021 21.1 1.6 1 23 649 671 649 671 0.98 14 16 4.4e-05 0.002 18.1 0.7 1 23 677 699 677 699 0.97 15 16 3.6e-05 0.0016 18.4 0.8 1 23 705 732 705 732 0.96 16 16 6.3e-05 0.0028 17.6 0.2 2 21 739 758 738 759 0.93
Sequence Information
- Coding Sequence
- ATGGCATCAATATTCTTTAGTGACCTTAGTGGTGTTGAAAGCGAGGCAGGCTTGTCAATGCAATCACTTCTTGACACTCAGAGCTCTACTGATCATCTGGGGAGTGGTTCAGATTCTGTTACTGACCCCTGTCATGCAAATAATATCGtTTGTACAGATTTATCATTGGATGAATGCGATGTCTTCCAGTGTGGAAAGTGTCAAAAACTTTTCACCTCATTTGCTCAGTTCATCAACCATAAGAAGCTCCATGGATCTGgCGGGGTAGGAGGAAATGATAAAACCAGTCTGGCAGAATCGGTGATCCTAAGTGACACTGACATCCTGTCTTTTTCCATCGACCAAAATGATTTAAATTCTCATGTATTAACAGCGGTTCCGGCTCATTCCCTCTTCCCCTCCAGTGACTCAGAAATCACAAGCCTTCAGATGAATCCAGCTGAGAATTCCTTGACAGAAAACATTTTTGCTACCcagATGGAGAGTGATAAAGGAGAAGTGCTTTTCAACGAGCCGTCTAccacaaatcaaatttttgttacATCTGAAGATAGCAACTTCCTATCCAGTTCTCCGCTACTATCTGCGATCCAAACAAATGCCTTAGGCGAAAGAACGGTGGCTGTTTCAATCGTTGAAGTCATACAAGAAGGTGATAATTCTACACTAAATTCCATTCCGGGAATGGAAACTAGTGCAGACACAAGTAGCTTGGAGGGGAAAAAGCAGCTTTGTCCTTTCTGTAGCAAGCCCTTCCTCTCAAAAGTTGACCTAGACTTTCACGTACAGTCTCACACCGGTCCACGCCCGTACCTATGCATTGTTTGCACAAGGACCTTCACGCAGAAAGCAACTCTCCGCAAACATATGAAATCGCACAAAGTCTGGCCAAAGGACTTATCTGGAGCTGCTGAAGCGAATCGATGCCAGTTTTGTGCGGAGGCATTTGCCAGTCCCTCTGAATTGAAGTCGCACCGTTTGAAGCACTTGGACCAGAAAGTTTACTGCTGCAGCCAGAAAGACTGTGAATGGACCTCACCTGATCTGAACACGTTCCTCAATCATGTAACATCACACGAGGTGTTCGGCTGTCATGTCTGTAAACAGAGTTTCTCCTCATTGGACAATCTGAACGTCCATCAATACATAGAACATGAGCAAGGAAAACTAAGTCCCAAGCAACAGGTGGTTGTTGAAGTAGTACCTGAAAAATCAGGAGCCGGCTCAGACTTAAATAGTGCCAAAAGTGAGGTCTgtgaaaaaaaacagttaaaatgCCCCTACTGCAACAAAGTGTTAAATAAAAACTTTGATCTGGAGCAACACATTCGATCACACACCGGTGAACGGCCTTTCCAATGTATTGTTTGCGGGCGTGCCTTCGTACAAAAGTCGCACGTCAAGAAACACATGGCATCGCACAAAGTCTGGCCGATGCCAATCACAACTCTAGTCAAAAGTGAAGTTCTCACCGATTCCCGCAAACCAAATGCCATGAGCCAGTCTTACGGATGCCAATTCTGTTCTGAGGTGTTTCTAACTTTTCGAGAACTTAAAGTCCACAGAGTTTCACATGCAGATCGCAAAGTCTACAAGTGCATTCAAAATGTGTGCGAGTGGACTTCACCTGATCTTGATGCGTTTCTGGAGCACTTGTCATTCCACGATGAAGATGCTAAGTACAACTGCCACATTTGTCACAAAGTGTTCACGTCTCTGGACGACTTTGGTATTCACCAGTATTACCATGAGATATCGCCAGGACAAGCTCCAGGTAAGAATTTCAGGTGCAAAAAATGCAAACGGAAGTTCATGTCTTCAGAGCTTCTGAAACAGCACATGCAACGAGATACACACCGACATTTGTGTCAGTTTTGCAACCGCGTGTTTGTTGCGGAACGGTTTCTACGGAAGCATTTACTCATCCACGCGGAAGATTTCCAGTACGAGTGTGAaacatgcaagaaaaaattcaagacgcCACAGTACCTGGATAGGCACATGAGCGTCCACTCTTCTAGCATGCCATACCCTTGCCCACGGTGCCCGATGAAATTCAAACGCAAAGACCGGCTGAGCCGGCACTTGCTTCTCCATGAAGGGGTGAAGAAATACAAATGCTCTTTTCGAGGTTTGCTCGGCTGTGATAAAGAGTTCTACCGAAAGGATAAACTCAAAGACCACATTCTTACACACTATAAGAGTGACCGCACTGTCTGTGATATTTGTGATAAAGATTTTAAACGCTTTTCGGCCCTGATGAAACATCGGCAAATTTGCGCTGCGAACCGAGAGAATAACGGAGATGAGGAGTCTGAAGGCCCACCACCTGCCAAGTCTTCAAAGCCCAAGCAGCATAAGGACTCCTTTTCCAAAGCAAAATGTTTTGACGAGACTGAAGTATCTCCGGATAATGATAACGTTCCTACAATCGAAATCGTTGTGATGCCTGTCAACAAGAGCACTCGTATGAGCCGTAATTTAGCATCTATTCAGCTGAGCGCTCTGAATAGTGAGCAGCTAAGTAAGATTTTTGTCACAGAAGCATCAAGCGCTGGTAACTCTGAATCCACTGACAGTGGTTCTTCATGA
- Protein Sequence
- MASIFFSDLSGVESEAGLSMQSLLDTQSSTDHLGSGSDSVTDPCHANNIVCTDLSLDECDVFQCGKCQKLFTSFAQFINHKKLHGSGGVGGNDKTSLAESVILSDTDILSFSIDQNDLNSHVLTAVPAHSLFPSSDSEITSLQMNPAENSLTENIFATQMESDKGEVLFNEPSTTNQIFVTSEDSNFLSSSPLLSAIQTNALGERTVAVSIVEVIQEGDNSTLNSIPGMETSADTSSLEGKKQLCPFCSKPFLSKVDLDFHVQSHTGPRPYLCIVCTRTFTQKATLRKHMKSHKVWPKDLSGAAEANRCQFCAEAFASPSELKSHRLKHLDQKVYCCSQKDCEWTSPDLNTFLNHVTSHEVFGCHVCKQSFSSLDNLNVHQYIEHEQGKLSPKQQVVVEVVPEKSGAGSDLNSAKSEVCEKKQLKCPYCNKVLNKNFDLEQHIRSHTGERPFQCIVCGRAFVQKSHVKKHMASHKVWPMPITTLVKSEVLTDSRKPNAMSQSYGCQFCSEVFLTFRELKVHRVSHADRKVYKCIQNVCEWTSPDLDAFLEHLSFHDEDAKYNCHICHKVFTSLDDFGIHQYYHEISPGQAPGKNFRCKKCKRKFMSSELLKQHMQRDTHRHLCQFCNRVFVAERFLRKHLLIHAEDFQYECETCKKKFKTPQYLDRHMSVHSSSMPYPCPRCPMKFKRKDRLSRHLLLHEGVKKYKCSFRGLLGCDKEFYRKDKLKDHILTHYKSDRTVCDICDKDFKRFSALMKHRQICAANRENNGDEESEGPPPAKSSKPKQHKDSFSKAKCFDETEVSPDNDNVPTIEIVVMPVNKSTRMSRNLASIQLSALNSEQLSKIFVTEASSAGNSESTDSGSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -