Btab009031.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:10636-35289[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0018 0.081 13.0 2.2 1 23 387 410 387 410 0.97 2 20 0.034 1.5 9.0 1.5 1 23 416 439 416 439 0.95 3 20 0.0086 0.38 10.9 0.3 1 23 475 498 475 498 0.96 4 20 0.00095 0.043 13.9 0.6 1 23 504 527 504 527 0.94 5 20 0.013 0.6 10.3 6.0 1 23 533 556 533 556 0.94 6 20 0.016 0.73 10.0 2.3 2 23 563 585 562 585 0.95 7 20 0.00044 0.02 15.0 0.6 1 21 591 611 591 612 0.95 8 20 0.013 0.58 10.3 4.2 1 23 620 643 620 643 0.94 9 20 0.0031 0.14 12.3 1.0 1 23 649 672 649 672 0.95 10 20 0.13 5.9 7.2 6.3 1 23 679 702 679 702 0.97 11 20 0.011 0.48 10.6 2.0 1 23 708 731 708 731 0.97 12 20 5.8e-06 0.00026 20.9 0.4 1 20 737 756 737 757 0.96 13 20 0.00016 0.0073 16.3 2.2 1 23 766 789 766 789 0.96 14 20 0.0036 0.16 12.1 0.3 1 23 795 818 795 818 0.91 15 20 0.00015 0.0066 16.5 2.0 1 23 824 847 824 847 0.96 16 20 0.01 0.45 10.7 0.5 1 23 853 876 853 876 0.89 17 20 0.00015 0.0069 16.4 2.0 1 23 882 905 882 905 0.96 18 20 0.01 0.45 10.7 0.3 3 23 913 934 912 934 0.94 19 20 0.00015 0.0069 16.4 2.0 1 23 940 963 940 963 0.96 20 20 0.01 0.46 10.7 0.2 1 23 969 992 969 992 0.91
Sequence Information
- Coding Sequence
- ATGGACGGGGACTTTGAATGGGTGCCCGATGTGCAGCTCAAAAGAGAAGTCTTGTCTGATGAAATCACAGAATACGGAGAATATGGAGCAGAATTTGGTCAGGATATCAAGCTCCGTGTCAAATGCAAGCTTCAACAGGAACCAGTCGTGTGCCTTGAGAAAATCGATCTCACATCATTCAACAATGGAACTTGTTACACCGGCGACCTCCAGAAGTCGCGGGTACCTCTTCGAGAACCGGACGTCGATTATCAGGGAGAACCTGATGTCGATCGTGAGAACAGCCAAGCAGAATCCACTTTTCTTGAACGGAAATACGTGACTTCGTCTCTACTGTCGGTTATAAAAGTAGAAGAAGTAGAGGAGGCAGAGGAAGATGAATCAGGCAGCAAGAGCGCCATCCTTCGTCTGGTCCTGAAACAAGAATTGGACGCGGAATCCTCGACGAGCCAAGCGCCCGATTCCATCCCGGAAATCCAACGTGAGGACGAACCCGTCTCGAACAAATCCCAAGGAGACGgCAGTCACCAAAAACTCGGCGGACGAGATTCGAACGGATGGAAAACGCCGGTTGTCCTGCTTGAAAGGCTTGATCCGGTATTCGTGCGTCACCATTTGAAAACGTCAGAGTCTACCTCCAGTTCGAGTTGTTCTGCCCCGCCTTCGTTCCAGCTTAAAAAGGAGGGAGGATCGCGTTTTGATCCCACATCCGTCCACAAACATGTCTCAGAAAACCAAGGAACCGGCAGACTATCTATCAACGCTTCATTAGTGTCGACCCAAAATGAAggaacattttccaaaaaagaagCCTTAGAGACATTCACTTCAACCACGGACACGAAGAAGCTTCGTCTCACAACTTTGGAAAAATCCTCTCCCAGCAGTAGTTTTAATTATCCCACTAATACTAGCGCAAGACTGACGAAATCCAGTCGGCAAAATAAAAACCAACTTGGCAAGAGAATGTTGAAATCAGGCATTGACAGGCATGCTAACGGCAATGCTCGAATCGTTGCATGCAGCGAGCATTCGACTAATGCTGTATTGCCATGCACCTCTGATCAACTTCCCCCATTAAACGAACACTCACCGCAACTTAAATCGGGACTCTCTCCAAGCTCATCAGTAATGCCCATGCCCAAGTATGAGCGACCATTTTCGTGCGTGCAGTgctcaagaaaatttaaatcgcGGGCATCTCTTCTGGGGCATATGCATCGAGGCCACAGTGAAGACCGAAAATTCTCCTGTGATAAATGCTCATCAAAATTCATATCGATTTTACATTTGAAAGCGCACCTGAAAGGCTTGCACAGCGATAAACCACCATTATTCTCTTGTAGCCAATGCTCATCAACCTTTAATTGCAAGAATGGTTTACTCGTTCACTCTCGTCACGCCCACAACAGTGATCGAAACTTCGCGTGTAGTCAATGTTCTAGTAAATTTGAAGTGAAAGGAGCTTTACAAACACACATTAAGTACGCTCACAATGATGAACGCCCCTTCTCATGTGCTCAATGCtcaagaaactttaaaagccggAATGCACTACGGACTCACGTTCAGGGCGTCCACAGCGAAGATCGGCCCTTCTCATGTGGTCAATgctcaagaaaatttaaatttaaccaTTGTTTAAAACGGCACGTACAAGGAGTGCACGGTGAAGATCGCCCCCTCTCGTGTGATAAGtgcttcaaaaaatttaaatggacgAGTAAACTCAGAGAACACATGAAGTACGTCCACACTGCCGCTCGACCCTTCCCCTGCGATGAGTGCTCACGCAGATACAAAACAAAAACCGCTTTAAACTTGCATCTGAAGAAATTCCCTACCAATGATCGTCCATTCTTGTGCAATCAGTGTCCTTCCAGTTTTGCACGTAAGTGCGCTCTAAGGCACCATAACCGCTCAGTTCACAACGAGAACCAAACCTTCGCGTGCAGTCAGTGCACGAGAAAATATAGAACGAAAAGCGCCATGGTCGTTCATGTCAAGCAAACGCACAGCAATGATTGGATAACCTACTCGTGTGCTCACTGCTCAACCAAGTGCAAATCAAAAAGCGCAATTCATTCACATATAAAGTCCATTCACAGCACCTATCGACCATTCTCATGCGACCAATGCTCAGCGAGGTTTAGAACAGAAACTCGTTTGCAGTATCATACACGCAACTTACATCTCGGTGAACGACCCTTCATTTGTGATCAGTGCCCGAAAACGTTTAAACACTCCGCGGATTTGAAGAGACATATTGCGTGCGTCCATACTTCCTATCGACATTTCTCATGCGATACGTGCTCAAGCACTTTCAAATCAAAATCTTACTTGCGGGACCATATTAAGTACGTCCATATTGGCTCTCGGTCCTTCTTGTGCGATCTGTGCTCGAGCACATTCAAATCACAACCCGCTCTGAAGAGGCATGTTTTGTTGGTCCACACTTCCGATCGACCTTTTTCATGTGATACGTGCTCAAGCACTTTCAAATCAAAATCTACTTTGCGGGAACATATTAAGTACGTCCATATTGGCTCTCGGTCCTTCTTGTGCGATCTGTGCTCGAGCACATTCAAATCACAACCCGATCTGAAGCAGCATGTTTTGTTTGTCCACACTTCCGATCGACCTTTTTCATGTGATACGTGCTCAAGCACTTTCAAATCAAAATCTACTTTGCGGGACCATATTAAGTACGTCCATATTGGCTCTCGGTCCGTCTTGTGCGATCTGTGCTCGAGCACATTCAAATCACAACCCGCTCTGAAGAAGCATGTTTTGTTGGTCCACACTTCCGATCGACCTTTTTCATGTGATACGTGCTCAAGCACTTTCAAATCAAAATCTACTTTGCGGGACCATATTAAGTACGTCCATATTGGCTCTCGGTCCTTCTTGTGCGATCTGTGCTCGAGCACATTCAAATCACAGCCCGCTCTGAAGCAGCATGTTTTGTTGGTCCACACTTCCGATTGA
- Protein Sequence
- MDGDFEWVPDVQLKREVLSDEITEYGEYGAEFGQDIKLRVKCKLQQEPVVCLEKIDLTSFNNGTCYTGDLQKSRVPLREPDVDYQGEPDVDRENSQAESTFLERKYVTSSLLSVIKVEEVEEAEEDESGSKSAILRLVLKQELDAESSTSQAPDSIPEIQREDEPVSNKSQGDGSHQKLGGRDSNGWKTPVVLLERLDPVFVRHHLKTSESTSSSSCSAPPSFQLKKEGGSRFDPTSVHKHVSENQGTGRLSINASLVSTQNEGTFSKKEALETFTSTTDTKKLRLTTLEKSSPSSSFNYPTNTSARLTKSSRQNKNQLGKRMLKSGIDRHANGNARIVACSEHSTNAVLPCTSDQLPPLNEHSPQLKSGLSPSSSVMPMPKYERPFSCVQCSRKFKSRASLLGHMHRGHSEDRKFSCDKCSSKFISILHLKAHLKGLHSDKPPLFSCSQCSSTFNCKNGLLVHSRHAHNSDRNFACSQCSSKFEVKGALQTHIKYAHNDERPFSCAQCSRNFKSRNALRTHVQGVHSEDRPFSCGQCSRKFKFNHCLKRHVQGVHGEDRPLSCDKCFKKFKWTSKLREHMKYVHTAARPFPCDECSRRYKTKTALNLHLKKFPTNDRPFLCNQCPSSFARKCALRHHNRSVHNENQTFACSQCTRKYRTKSAMVVHVKQTHSNDWITYSCAHCSTKCKSKSAIHSHIKSIHSTYRPFSCDQCSARFRTETRLQYHTRNLHLGERPFICDQCPKTFKHSADLKRHIACVHTSYRHFSCDTCSSTFKSKSYLRDHIKYVHIGSRSFLCDLCSSTFKSQPALKRHVLLVHTSDRPFSCDTCSSTFKSKSTLREHIKYVHIGSRSFLCDLCSSTFKSQPDLKQHVLFVHTSDRPFSCDTCSSTFKSKSTLRDHIKYVHIGSRSVLCDLCSSTFKSQPALKKHVLLVHTSDRPFSCDTCSSTFKSKSTLRDHIKYVHIGSRSFLCDLCSSTFKSQPALKQHVLLVHTSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -