Basic Information

Insect: Bemisia tabaci
Gene Symbol: -
Assembly: GCA_903994105.1
Location: NW:5203695-5232426[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.03 1.3 9.2 0.1 6 22 246 262 244 262 0.92

2 13 0.086 3.9 7.8 3.1 8 23 276 291 275 291 0.93

3 13 3e-06 0.00014 21.8 2.6 1 23 297 319 297 319 0.98

4 13 4e-06 0.00018 21.4 5.3 1 23 325 347 325 347 0.98

5 13 0.00054 0.024 14.7 0.4 1 23 353 375 353 375 0.98

6 13 0.00024 0.011 15.8 1.2 1 23 381 403 381 403 0.98

7 13 5.7e-07 2.6e-05 24.0 2.7 1 23 409 431 409 431 0.98

8 13 1.3e-05 0.00057 19.8 5.3 1 23 437 459 437 459 0.98

9 13 0.00054 0.024 14.7 0.4 1 23 465 487 465 487 0.98

10 13 0.00024 0.011 15.8 1.2 1 23 493 515 493 515 0.98

11 13 9.8e-06 0.00044 20.2 4.8 1 23 521 543 521 543 0.99

12 13 3.7e-06 0.00017 21.5 5.7 1 23 549 571 549 571 0.99

13 13 0.00058 0.026 14.6 3.2 1 23 577 599 577 599 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.03	1.3	9.2	0.1	6	22	246	262	244	262	0.92
2	13	0.086	3.9	7.8	3.1	8	23	276	291	275	291	0.93
3	13	3e-06	0.00014	21.8	2.6	1	23	297	319	297	319	0.98
4	13	4e-06	0.00018	21.4	5.3	1	23	325	347	325	347	0.98
5	13	0.00054	0.024	14.7	0.4	1	23	353	375	353	375	0.98
6	13	0.00024	0.011	15.8	1.2	1	23	381	403	381	403	0.98
7	13	5.7e-07	2.6e-05	24.0	2.7	1	23	409	431	409	431	0.98
8	13	1.3e-05	0.00057	19.8	5.3	1	23	437	459	437	459	0.98
9	13	0.00054	0.024	14.7	0.4	1	23	465	487	465	487	0.98
10	13	0.00024	0.011	15.8	1.2	1	23	493	515	493	515	0.98
11	13	9.8e-06	0.00044	20.2	4.8	1	23	521	543	521	543	0.99
12	13	3.7e-06	0.00017	21.5	5.7	1	23	549	571	549	571	0.99
13	13	0.00058	0.026	14.6	3.2	1	23	577	599	577	599	0.98

Sequence Information

Coding Sequence: ATGGACCAATCCAAGGCAATGAACGCATCTGGATACCCACAACTCATTATTTCTGAAAACAGGAGTCTTACGACGGCATCGGACTTGGAATCAAGGATCACTCCGCAGGACAGCAACCTGGAGGATGTTGAAACGGATGAACCTAAAATCATCGAATGGATCACTCTCAGGCGAAATATACATCCACCAACCGTCAAGCCAAAACTCCAGAGATTGCACCGAGCGGAACAAGTAGAGAGGAACCCCAGAACGACATCACGGAGGATTTTCAAAAGATCTGCACGCAGCAACGTAGGTACACTTTTGGAGGACAGCTCATCAGTCAACACTCAACAAGTCTCCATTCCAAAGATCGCACCAGGTATGATTTGTGAGAAAGAGTCACAAGACAACGTCGTGGAGGTTGGTCACACAATTATCATAAAGAGTGAAGTAATCGAACCTAAAATAGAAACGACTTTCGACTCGGAATTTGCCATTCATAAATTCCATCctttaaaacatgaaaatgaaacttcTTTGAGCAGTGCAGATACTTTAACCGGACGGATCCAAAAAGGATCGCACTCGCGTGATTCTGTTATCGGTCATTCTCTTAGGAAAAATCTAGAAGTGGACGGTAAGGATGAAATGTCTAATAATCCCTTacatgaaattcttgaaattaaGAATGAAGACGATTGCACCGTCACGAAACAAACGCTAAGAGGCAAGAAACAGTTCAGTTGGAATCGTTGCTCCTCCTCCTTCATTGAGAAAGAAGATTTAACTAGACATATGAGAACGTATACCGGCCAGAAATCATTCAGTTGCAGTTTTAGCTCGACGTCCTTTTTCCATAACAGTCAATTAAAGAGGCATGTAAAAACACATACCGGAGAGAGGCCATTCAGTTGCAGCCATTGCTTGACCTCATTCGCTCGTAAAGGCGATTTACGGAGCCATATACGGACTCATACTgccgagaaaccattcagttgcagtcattgcgcGTCGTCCTTTTCCCGTAACAGCCATTTAGAGAGACATATAAGAACTCATACTggagagaaaccattcagttgcagccTTTGCTTGGCCTCCTTTCGCGAAGGAAGTAATTTAGATAGGCATATAAGATCGCATACCGaagagaaaccattcagttgcagtcttTGCCCTTCCTCCTTCCGTGAGAAAGAGAAATTGACTGAACACACGCGAATGCATACCGGAGAGAAGCCATTCAGTTGCAGCCATTGCTCGACCTCATTCGCTCGTAAAGGCGATTTACAGAGCCATATACGGACTCATACTgccgagaaaccattcagttgcagtcattgcgcGTCGTCCTTTTCCCGTAACAGCCATTTAGAGAGACATGTAAGAACTCATACTggagagaaaccattcagttgcagccTTTGCTTGGCCTCCTTTCGCGAAGGAAGTAATTTAGATAGGCATATAAGATCGCATACCggagagaaaccattcagttgcagtcttTGCCCTTCCTCCTTCCGTGAGAAAGAGAAATTGACTGAACACACGCGAATGCATACCGGCGAAAAACAATTCAGATGCAGCCATTGCTTGACCTCCTTCGCCCGTAAATACGATTTACAGAACCACACACGAACtcatactggcgagaaaccattcACATGCAGTCACTGCTCCACTTCTTTCACtagaaaattaactttaaataatcatATGCGAACGCATATGGGGGAGAAACcgttcagttgcagtcattgctcttcctcCTTCActaaaaaaggaagtttaaatgAGCATGTACTGAAGCACACTGAAGAGACTAGTGAGACTGTTTTTCTAAAGAGTGAAGTAATCGAACGGGACATAGAATAA
Protein Sequence: MDQSKAMNASGYPQLIISENRSLTTASDLESRITPQDSNLEDVETDEPKIIEWITLRRNIHPPTVKPKLQRLHRAEQVERNPRTTSRRIFKRSARSNVGTLLEDSSSVNTQQVSIPKIAPGMICEKESQDNVVEVGHTIIIKSEVIEPKIETTFDSEFAIHKFHPLKHENETSLSSADTLTGRIQKGSHSRDSVIGHSLRKNLEVDGKDEMSNNPLHEILEIKNEDDCTVTKQTLRGKKQFSWNRCSSSFIEKEDLTRHMRTYTGQKSFSCSFSSTSFFHNSQLKRHVKTHTGERPFSCSHCLTSFARKGDLRSHIRTHTAEKPFSCSHCASSFSRNSHLERHIRTHTGEKPFSCSLCLASFREGSNLDRHIRSHTEEKPFSCSLCPSSFREKEKLTEHTRMHTGEKPFSCSHCSTSFARKGDLQSHIRTHTAEKPFSCSHCASSFSRNSHLERHVRTHTGEKPFSCSLCLASFREGSNLDRHIRSHTGEKPFSCSLCPSSFREKEKLTEHTRMHTGEKQFRCSHCLTSFARKYDLQNHTRTHTGEKPFTCSHCSTSFTRKLTLNNHMRTHMGEKPFSCSHCSSSFTKKGSLNEHVLKHTEETSETVFLKSEVIERDIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -