Basic Information

Insect: Bemisia tabaci
Gene Symbol: -
Assembly: GCA_903994105.1
Location: NW:354977-426989[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.012 0.56 10.4 0.2 1 23 270 292 270 292 0.95

2 12 8.6e-05 0.0038 17.2 1.7 1 23 300 322 300 322 0.98

3 12 0.00021 0.0093 16.0 0.2 2 23 330 351 329 351 0.97

4 12 1.7e-05 0.00078 19.4 5.3 1 23 357 379 357 379 0.98

5 12 0.00068 0.03 14.4 1.1 1 23 386 408 386 408 0.96

6 12 9.7e-05 0.0043 17.0 0.3 1 19 414 432 414 436 0.94

7 12 2e-05 0.00089 19.2 0.2 1 23 442 464 442 464 0.98

8 12 8.5e-07 3.8e-05 23.5 1.2 1 23 470 493 470 493 0.96

9 12 2.8e-05 0.0013 18.7 0.7 1 23 499 522 499 522 0.96

10 12 1.2e-05 0.00052 19.9 3.0 1 23 528 550 528 550 0.99

11 12 1.6e-05 0.00073 19.5 0.3 1 23 556 578 556 578 0.97

12 12 0.0025 0.11 12.6 0.1 1 21 584 604 584 608 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.012	0.56	10.4	0.2	1	23	270	292	270	292	0.95
2	12	8.6e-05	0.0038	17.2	1.7	1	23	300	322	300	322	0.98
3	12	0.00021	0.0093	16.0	0.2	2	23	330	351	329	351	0.97
4	12	1.7e-05	0.00078	19.4	5.3	1	23	357	379	357	379	0.98
5	12	0.00068	0.03	14.4	1.1	1	23	386	408	386	408	0.96
6	12	9.7e-05	0.0043	17.0	0.3	1	19	414	432	414	436	0.94
7	12	2e-05	0.00089	19.2	0.2	1	23	442	464	442	464	0.98
8	12	8.5e-07	3.8e-05	23.5	1.2	1	23	470	493	470	493	0.96
9	12	2.8e-05	0.0013	18.7	0.7	1	23	499	522	499	522	0.96
10	12	1.2e-05	0.00052	19.9	3.0	1	23	528	550	528	550	0.99
11	12	1.6e-05	0.00073	19.5	0.3	1	23	556	578	556	578	0.97
12	12	0.0025	0.11	12.6	0.1	1	21	584	604	584	608	0.92

Sequence Information

Coding Sequence: ATGACGGAGGGCCCTGGAAAAGTGCAAGAAAAAAAGTGGAGTACTACGTGCCTGCTTTGCAATGCATCGTCTGGAGTCTCAACAAGGAACAGCGTTCCAATCTTTGAATGTCTTACCTCTACGTCGGAGCGTCCATTGGTAAAACTGATCGGGTTTGTGCTTGGACTGGAGATAACAGTTGAGGATGTTCATAGTACTATTATCTGTAAAAAATGCTTCAAGCTCTGTGACGAGCTCGATGAGTTGGAAGACAGACTGTCGGAGTTGAAGCAGGAGATAAGCACAAATTACCAGCGTACTCTAAAAAGGCTGGAAGAAAAGGGCATAGACGGATTGGAAGAAAATGAGGAAGTGCAGCTAGTAGCAAAAAGTGGCCCAGGCCCAGGTCGTCCCAGGAAGAGACCTGTCGGAAGGCCGCCCTTAGTGAtgaaacaggaaaaagaaaataccaacTCTGGTCCTGCTTTGGAATCAAGGAAAGATGATGAAAATGAGGGCTTACAATCTTTGCTTGAAACAACAATGACagttgaagaaaatgaagactCAAAAGTGCGAGttgaaggaggaaaagaagaagggaaaacaAGTGTGGATAAGAATGATCCAGAGttcaaagtcaagaaaaaatgtttttcagggAAAAGGAAGAAGTCAAAACCAACCAGTGAGTCCATCATACCACAAATGGTTGTTGGGCGTGAAGGAAATGAGTACAATTGTCTGCTCTGTTCTgtggaagaaaaattcaaagctgAGGCAAAAGAAATTATCACTCACATGAAAGAGACTCACCAATTGCGCTTGTATATTTGTGACATTTGTGGGCAGGAGTTCTTGAAACGAACAGAACTTTTTACACATCTTGATGAACATGTCAACAATGAGGATGGCGATTTCCAGTGCGAGATATGCAACCGAATATTCAACAATCTCCGTCTTTTCAGagttcataaaaaaatgcaCTACCCTCAGGCCAAAAACTGGACTTGCGAGCTATGTGGCAAGCGCTATGGGTCGAAAAATATGCTGGAAGAACATCGAAATGTGCACACAGGCAATCGGCCATATTGTTGCAGCACTTGTGGAAAGAGTTTTGCCTCGAAATACACATTCAGGTCCCATGAGAGGACACATGAAGAGCGTGATCGCCCATTCACATGTATTAACTGTGgcaaaacattcttaactcagcAAAATTTGATTCAACATGAGCGGACTCACTCTGGCCTTAGGAACTACGTCTGTCAAGAATGCGGTAAAGCTTTTGGCACAGCTAGGAACCTAGAGGTCCACTGTGTCATACATACTGGCTTTAAACCATTTATTTGCCGAATGTGTGGTAAAGCCTTTGCTCGGAAAGCAGAGATCAAAGATCACGAAAGAACTCACACTGGGGAGAAACCATACCAATGCGAGTTCTGTGGCGCAACATTTAGTCAGCGAAGCAATCTTCAGTCTCACAAGCGAGCGACACACTATGATGATAAGCGGTACAAATGCCTTGAGTGTGGACGCGGTTTCAAGCGTCGTCGTTTATTAGATTACCACATGAAGGCTGTGCATACTGGCGAGCGACCATTTAAATGCTCAATATGTAATGCCACATTTATCTATCCTGAGCATTTCAAGAAGCACAGGAGGATTCACACTGGAGAAAAGCCGTATGAGTGTGAGGTCTGCGGAAAAGCATTCAACAGTAGAGATAACCGCAATGCACATCGGTTTGTACACAGCGACAAGAAGCCTTATGAATGTTTGGTTTGTGGAATGGGTTTCATGCGGAAACCCCTTCTCTACAATCATATGGAAGCTCAGGGTCATATGAATGATACTATTGTCGTAAACCAACCGAGGCTGACTCCCTCGGATACAACAATCATGACTGCTCAAGACACTGCAACTGGTGTTGAGATGACAATAGTAACAGATGCTGATGGAAATCACAAATTAGTTCCTGCTGATCAAGTCGCTGAATTCCAAGAAATGTCTGAAGATGAACGGCGGGTATTCATCGCTGAACTTAAAGATCATGTGATCATTCAGAGTAAAGAACCTGAAGGAGAGGGAGAAGGCGAGCAAGGGGAACTTATCGAAAGTCATCAGCTCACAGATGCAGCTGTAGAACAGCTGATCATAGATGGACAGGTTCATTTTGCAAGTGCTAGTGAAGTTGAGCACGTAAAAATTGTGCCTGAGGAAGAAATATTAGTCGCAGCTGATGGAACTGAACATTTAATTGTGCCAGCAGATGATACCAACGGAACAGAATTCCACGGAACGACAACTGTTGAAACTGAGGACGGTCCTGTGCATTTAGTCCAGATTCGATTGGAGGAAAATGCGGCTGAAAACGGTGATGCGCAAAAAACTTGGTTCAACATTGTCACcgagaatgaataa
Protein Sequence: MTEGPGKVQEKKWSTTCLLCNASSGVSTRNSVPIFECLTSTSERPLVKLIGFVLGLEITVEDVHSTIICKKCFKLCDELDELEDRLSELKQEISTNYQRTLKRLEEKGIDGLEENEEVQLVAKSGPGPGRPRKRPVGRPPLVMKQEKENTNSGPALESRKDDENEGLQSLLETTMTVEENEDSKVRVEGGKEEGKTSVDKNDPEFKVKKKCFSGKRKKSKPTSESIIPQMVVGREGNEYNCLLCSVEEKFKAEAKEIITHMKETHQLRLYICDICGQEFLKRTELFTHLDEHVNNEDGDFQCEICNRIFNNLRLFRVHKKMHYPQAKNWTCELCGKRYGSKNMLEEHRNVHTGNRPYCCSTCGKSFASKYTFRSHERTHEERDRPFTCINCGKTFLTQQNLIQHERTHSGLRNYVCQECGKAFGTARNLEVHCVIHTGFKPFICRMCGKAFARKAEIKDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCLECGRGFKRRRLLDYHMKAVHTGERPFKCSICNATFIYPEHFKKHRRIHTGEKPYECEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYNHMEAQGHMNDTIVVNQPRLTPSDTTIMTAQDTATGVEMTIVTDADGNHKLVPADQVAEFQEMSEDERRVFIAELKDHVIIQSKEPEGEGEGEQGELIESHQLTDAAVEQLIIDGQVHFASASEVEHVKIVPEEEILVAADGTEHLIVPADDTNGTEFHGTTTVETEDGPVHLVQIRLEENAAENGDAQKTWFNIVTENE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -