Btab002664.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- L
- Assembly
- GCA_903994105.1
- Location
- NW:2368876-2425983[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2e-05 0.00089 19.2 1.0 1 23 77 99 77 99 0.98 2 23 0.27 12 6.2 5.9 1 23 105 127 105 127 0.98 3 23 1e-06 4.6e-05 23.3 2.3 1 23 133 155 133 155 0.99 4 23 2.3e-05 0.001 19.0 0.2 1 23 161 183 161 183 0.98 5 23 0.00016 0.0072 16.3 0.6 1 23 200 223 200 223 0.98 6 23 0.96 43 4.5 0.4 2 20 322 340 321 344 0.89 7 23 0.37 17 5.8 0.2 2 23 465 486 464 486 0.95 8 23 2.5e-05 0.0011 18.9 0.6 1 23 514 536 514 536 0.97 9 23 0.00044 0.02 15.0 0.1 3 23 546 567 544 567 0.92 10 23 0.12 5.2 7.3 0.2 1 23 572 595 572 595 0.92 11 23 0.22 9.8 6.5 0.2 1 23 602 628 602 628 0.96 12 23 1.2 55 4.1 0.2 2 23 650 671 649 671 0.93 13 23 0.001 0.046 13.8 0.7 1 23 675 698 675 699 0.97 14 23 0.65 29 5.0 0.4 3 23 767 789 766 789 0.91 15 23 5.9e-05 0.0026 17.7 2.5 2 23 802 823 801 823 0.96 16 23 0.012 0.55 10.4 0.4 1 23 833 855 833 855 0.98 17 23 0.15 6.6 7.0 1.0 3 23 864 884 863 884 0.97 18 23 0.013 0.59 10.3 0.0 2 23 968 990 967 990 0.95 19 23 6.3 2.8e+02 1.9 0.1 1 23 994 1016 994 1016 0.95 20 23 1.9 84 3.5 0.1 2 23 1026 1047 1025 1047 0.94 21 23 0.014 0.64 10.2 0.0 1 23 1055 1077 1055 1077 0.97 22 23 1.9 83 3.6 1.0 1 23 1084 1106 1084 1106 0.92 23 23 0.0007 0.032 14.3 0.1 1 22 1162 1183 1162 1183 0.94
Sequence Information
- Coding Sequence
- ATGCTGTTCAAGGGTAACAGCAGTAAATTGGAGCACCTAATCGAGAAAATTCAAGCCAACAAGGAGAACCACGAGTTGACCCATCAGCTAGACCTCAAAGACGCCCTGGGGACGGAACCGGGGTCATCATGGGGGTCTGAGACCTCCCCCGGGAGTTCGTGCGCCACTCCCAACTCCGCGGCGGAGTCGGATGTGACGTTCACGGTCGGAGTCACCGACGCCACCCCCTACGCCTGCCAGTTCTGCGAGAAGGCCTTCCCCAGGCTCAGCTACCTCAAGAAACATGAACAGACGCATAGTGAGCACATGCCGTTCCGGTGTGAGTTTTGTAGCCGACTTTTCAAGCACAAGAGAAGCCGGGATCGTCACATCAAACTCCACACGGGTGACAAAAAATATAGGTGTACGCAGTGTGAAGCCGCTTTTTCCAGAAGCGATCACCTGAAGATCCACATGAAGACCCACGACAATCAGAAGCCGTTCCAGTGCACGGTCTGCAACCGGGGCTACAACACAGCCGCCGCTCTTACCTCGCACATGCAGAACCACAAACGCTCCCCCACCCCCAACAACAACAATGCTGCGCCCGGCAGCTCCTATCGCTGCCTTCAATGCTCCGAACTCTTCCGGAAACCTGAGCAATTACAgAATCATATGTCAACTGCCCACAAGATGGAGCCACCAACAACAGGAGCAAGATCTGGAAGTCGCGGGGGCTCACCCTACACGTCAGCTTCCCGCCCACGGCTCGCTTGCATATATTGCACAAATGACAACTTCACCACCATGGAAGCCCTTCAACTTCACGTTCAAGCTATGCACGGCTCAATCCTAAACGGCGATCTGCACCGCGAGCTATCCCAACAGCAACTATCCCTCCCGAGCCCAGGCCAGCACTTCATGTCCTCTCTCAGCCTCGGCTCCCCCGGCTCTGCAACCCGCAACTCAGCACTCCTCCCACTGACCTGTGAGCTGTGCACGATGCGTTTCGGCTCCGTGCAGGCGCTGCACAAGCACGCCGTCTTCGTCCACGGCTACCGGGGCGCCCTCAACGGCAAAGACCAGGGCCCGGCCCCGGAGCCCCTTTTCTGCGTCCGCTGCGCCCTCCCGTTTCCATCCCCAGCATCTTTCGCCGAGCATTTTGTCTTGGTGCACGGATCCAGCGCTGCCAACCTTTTAGGCATCCCGTCGCCCGTCCAGCTCAAGCCCACGGATTTGAGTGTTACTAAGAAGTCTGGTAAACATGCGAGTTCGAGTCCGGGAGAGGACGATCGCCCACCCTCTGGCAAGAAGGCCAAAGTCGGTCAGGAGAATGGTGTATCGCCCAATGGACCGTTGCCGAGGTCTTTGTCCAGGACACCTACTAACCACTACGACGAGCCAGGGACCCTAATGTGCAACCAATGCAACGCCGCACTTCCGAACTTCGAGTCCTTCCGCTCCCACGTGAAGGCGCACATCGAGGAGGCGGGAGGCCTCCGGGGTCTCCTGGGGGGCGCCACGAACCTCGAACGCAAACTTAAGAGCCTGCCCCCCGAGCATCCGTGCCCCCACTGCGGCGCCACGTTCTCATCCCCCGAGAACCAGGCCCAGCACCTCCTCACCCACTTCCTCTCGACGACGACCGAGTACGGCTGCCAGTCCTGCGGCAAGGCCTTCGGGAAACCTGACGAACTCCAGCGGCATCTCCTTGATGCTCACACGCACCACCTCTACCGTTGCGCCCTTTGCAAGGAGATCTTCGACTCCAAGGTCACTATCCAGGTTCATTTCGCTGTTAATCATAGTAAGGAATGCAAGCTGTTTCGATGTACCGGGTGTCCGTCGTCTGTGGCCACGTATCGCTCGGAGATGGATTTCAATTCGCATGTCCGGACCGTCCATACGCCTCATTCTATGAACCTCCTGTCGTCGCCCAAACCTATTATCCAGtctccTCAATTACTGCAATGCTTCTTCTGTCGACTGAGCTTTGCATCCGAGATCGAACTCCAGTTCCATCTGGCTGTCCATACAAAACAGTTCCAATGCCCCGTGTGTCCGGAAGCGTTCCACGTCGAATTCTTGCTGGACAAGCACATGGAAACCGTCCATCATTCCTCTCAGgttgtAAATGGAGGAGATCAGCGACAGTGCTCAACGCCGAAATCCTCCAAAACTCCAACCGCCTCAACCCCGACGAGTCGAAACTCCTCAACTCCACAGCCAAATAATCTTCCCACTAGTCGTACTCCGAACGGATATCCAAGTCATCCCTCGAAAAAGTCTGAATCTAATCACAACATTCCATCAAACTCCTGTGATATCTGCGAATGTGCGAATTTCACCTCAGAGGCGGAACTGACTGCTCATCGGAAGCTAGTTCATAATGTCAAATCAGCGAATTCAGGAAAGGTGAGCTTGCattgcgcatactgtaatgaaaacttcaaaacaaGAACTGAACTAGAGAACCACATGAAGAGCCACTCTCAGAGCAGTGGAGGATCAGGAAAACATAAGTGCAATATCTGTGATGAAATCTGTCCGTCTGCAGCAGTTCTAGCGGAACATAAACTAACCCATTGCAAGGTGATATCGGGCTCGGCGTGCACCCACTGCAAGACGAGCCTGGGCGACGAGGAGGAGTTCATGCAGCACCTGCAGCAGCACAGCTCGACGAACCCGGGCctgcagcagcagcagcaactGGTGCTCCCGACCGCCTGCGTCATCTGCCGGCAGACGCTCGTCTCCGAGATGGAGGCCCGGATCCACGCGAGGTTCCACCTCCACCAGCGGCAGAGCGAGGCCTCCACGTCGACGTGCTGCGTCTGCCTCCAGCCCTGCGACCGGAGGGACCTCAACGTCGGCATATGCAGCGATTGTCTCCGCAAGCAGTCCTCCAAGGCCTCCATCGTCCGCTGCCCCGAGTGTCAGATCACCTTCGATGGGCCTCTCGCGCTGGAGGCGCATCTCGCGTCCGCGCATAGGAAGAATTATCAGTGCATCAAATGCCAAATAAGCCTAGAGACGGAGCAAGAGATGCAACTGCACGTGGCCTCGCACATGCTGTCGGACGGGCTGAGCGGTCTGGAGTGTCGGCTGTGCCTGCGGGTGCTCGGCTCGCCGCTGCAGCTCCAGACGCACCTGATCGAGCACACGTTCGCCGGCTGCCCGGCGTTCACGTGCTACATCTGCAGCTCCGTCTTCACGGCGGCCGCCGGGCTCCAGTCGCACATCCTCGAGCACGGCCTCGCCGCCCGCCCATACGACTGCCCCCGCTGTAGCTCCCGCTTCTTCTTCCGCGCCGAGCTCGACAACCACAGCTTCATCCACCTCGAGGAGGACGCCATCGGCGCCGACCTCACCAAGAATCTGTCCTATCACTATCAGAACCGCTTCTCGCCAAAGACCCCGAGCAAAGCGGCCCTGAACAGCAGTTTCAGCGAGTTCGATCAGAACAAGAACTGCCGGAAACAGCCCTCAAACGAGCGATCAGGCTTCGTTTGCCAAGAGTGCCAGAAGGAGTTCGACACAGAGGACACACTGGAAGCGCACTCGAAGACATGCCGAGCGAGAATAAACCCAACAGAGGATGCCAAAGAAGAGATCTCGGAGGACCCTCTGGAGGAAACCGAAGAGAAATGCCAGGACTTGAGCATCAACTCCCGGGAAAGCCAATCGCCAAGTAAGAGCGACGATGTTCCCTCCATCAAAAACGAAGCCGCGAGTCCTCGGATCAAGGAGGAGATGACGGACGATAATGAGAAGGAAATTGATGTCGGGGAGAATAGTGATGATACGGTGCCTTGA
- Protein Sequence
- MLFKGNSSKLEHLIEKIQANKENHELTHQLDLKDALGTEPGSSWGSETSPGSSCATPNSAAESDVTFTVGVTDATPYACQFCEKAFPRLSYLKKHEQTHSEHMPFRCEFCSRLFKHKRSRDRHIKLHTGDKKYRCTQCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKRSPTPNNNNAAPGSSYRCLQCSELFRKPEQLQNHMSTAHKMEPPTTGARSGSRGGSPYTSASRPRLACIYCTNDNFTTMEALQLHVQAMHGSILNGDLHRELSQQQLSLPSPGQHFMSSLSLGSPGSATRNSALLPLTCELCTMRFGSVQALHKHAVFVHGYRGALNGKDQGPAPEPLFCVRCALPFPSPASFAEHFVLVHGSSAANLLGIPSPVQLKPTDLSVTKKSGKHASSSPGEDDRPPSGKKAKVGQENGVSPNGPLPRSLSRTPTNHYDEPGTLMCNQCNAALPNFESFRSHVKAHIEEAGGLRGLLGGATNLERKLKSLPPEHPCPHCGATFSSPENQAQHLLTHFLSTTTEYGCQSCGKAFGKPDELQRHLLDAHTHHLYRCALCKEIFDSKVTIQVHFAVNHSKECKLFRCTGCPSSVATYRSEMDFNSHVRTVHTPHSMNLLSSPKPIIQSPQLLQCFFCRLSFASEIELQFHLAVHTKQFQCPVCPEAFHVEFLLDKHMETVHHSSQVVNGGDQRQCSTPKSSKTPTASTPTSRNSSTPQPNNLPTSRTPNGYPSHPSKKSESNHNIPSNSCDICECANFTSEAELTAHRKLVHNVKSANSGKVSLHCAYCNENFKTRTELENHMKSHSQSSGGSGKHKCNICDEICPSAAVLAEHKLTHCKVISGSACTHCKTSLGDEEEFMQHLQQHSSTNPGLQQQQQLVLPTACVICRQTLVSEMEARIHARFHLHQRQSEASTSTCCVCLQPCDRRDLNVGICSDCLRKQSSKASIVRCPECQITFDGPLALEAHLASAHRKNYQCIKCQISLETEQEMQLHVASHMLSDGLSGLECRLCLRVLGSPLQLQTHLIEHTFAGCPAFTCYICSSVFTAAAGLQSHILEHGLAARPYDCPRCSSRFFFRAELDNHSFIHLEEDAIGADLTKNLSYHYQNRFSPKTPSKAALNSSFSEFDQNKNCRKQPSNERSGFVCQECQKEFDTEDTLEAHSKTCRARINPTEDAKEEISEDPLEETEEKCQDLSINSRESQSPSKSDDVPSIKNEAASPRIKEEMTDDNEKEIDVGENSDDTVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -