Btab002730.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:1527808-1538085[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.18 7.9 6.8 0.4 1 23 251 273 251 273 0.96 2 24 0.086 3.8 7.8 3.4 1 23 277 300 277 300 0.97 3 24 0.00076 0.034 14.2 4.2 1 23 306 328 306 328 0.98 4 24 0.051 2.3 8.5 2.9 1 23 334 357 334 357 0.94 5 24 0.006 0.27 11.4 0.3 1 23 363 386 363 386 0.98 6 24 0.018 0.79 9.9 7.1 1 23 392 414 392 414 0.98 7 24 0.00066 0.03 14.4 0.6 1 23 420 442 420 442 0.99 8 24 7.7e-06 0.00035 20.5 1.0 1 23 448 470 448 470 0.96 9 24 0.00024 0.011 15.8 1.0 1 23 476 499 476 499 0.97 10 24 0.00029 0.013 15.6 0.4 2 23 506 527 505 527 0.97 11 24 0.0027 0.12 12.5 0.6 1 23 533 556 533 556 0.98 12 24 0.00015 0.0067 16.5 2.3 1 23 561 583 561 583 0.97 13 24 0.011 0.48 10.6 2.2 1 23 589 611 589 611 0.96 14 24 0.06 2.7 8.3 2.5 1 23 617 639 617 639 0.97 15 24 0.016 0.71 10.1 0.3 1 23 892 914 892 914 0.96 16 24 0.2 8.8 6.6 4.0 1 23 918 941 918 941 0.94 17 24 0.00052 0.023 14.7 4.5 1 23 947 969 947 969 0.98 18 24 0.029 1.3 9.2 4.7 1 23 975 998 975 998 0.93 19 24 0.00058 0.026 14.6 0.4 1 23 1004 1027 1004 1027 0.97 20 24 0.0074 0.33 11.1 7.0 1 23 1033 1055 1033 1055 0.98 21 24 0.00066 0.03 14.4 0.6 1 23 1061 1083 1061 1083 0.99 22 24 1.1e-05 0.0005 20.0 5.1 1 23 1089 1111 1089 1111 0.98 23 24 0.0011 0.047 13.8 0.4 1 23 1117 1140 1117 1140 0.97 24 24 5.3 2.4e+02 2.1 0.3 2 18 1147 1163 1147 1163 0.93
Sequence Information
- Coding Sequence
- ATGGCTGACGAACAAATGACATTTCCAGTCGTTTTAATCGAGAGACTCGCTGCAAATGAGAAATACTCTGTGGCTGAAAATGATACGCCAAAGATGCCACCAGTTGAATGTAAGTCCCAAGATATAAGTCCCTCTCAAGAAGTCATTAAAAGGGAATTTTCTGCCCAAATTGTGCCTGTTATAAAGCAAGAGCCTTGTTATGAATTTGAAGGAGGTACTTCTTCGCACTTAGATATCTCTATTAATCTTGTcggatttaatgtaaaaaatgagATTAAACCGGAAGTAACCGCTGAACTAGTAGGCAGTTTCCCCCTAAGTTTAAGCAGCAATCAGCCACAGTATCAGGAGACATTGAAAATCGAAAACAGGTCTGAGCAAAGTGAAATTGAATACCATTCCAACAACAGCTCTGAAAATTGTAGCAGAATATCTCCAAGAATCTTGGAACACCATGAAGTGGAGAATACAAAATGTAATGATGATACCATGACCCTCTCTTCCTTCATATCAAATGTCACTGTAAAGCTTGTGGATATGTTTTCTGATGAGGCTCGGAAGCGTGGTGAGGTACACTCCAGCAACAGTTTTTGCTCGTGTATTTTTTGTCGCAGAGTATACATGGACACATCAAATGCTCATTTACTCtctatgaatttaaaaaatgcctcAGAACATGGTCCTCCAAAATCCCAACAGAAACTTGCAAATCATTCTGGCCAAAgattatcaaataaaaaaaaaaaattattcaggtGTGCTGTTTGTCAAGTGCAGTGCAAAAATATCTCCAGCTGGAAGGCACACTGGGTCGTGCATAAGGGAAACTACAAATGCTTTTTGTGCAAAGTGAGGTGTGAATCTGAAAAGAAGTTTGAGAATCATATGAGGGATGCACACAGCATTGGAAAAGCGTACAAATGCAGTATTTGCTCCAAATCATTTAGGCTATTAAGTTGTTTACTCCAGCACTTTAAGGTGCATATTGAAGATCGCCCATTCAAGTGTGATCTTTGCTCCATGGCATTCAAAATTCATCAGCATTTAACCGTACACAAGGAGAATATTCATTTGAAAGCTAAACCATATTCCTGTGACCTCTGCACAGCAAAATTCAGTACGAAGCCAATACTCTCCGATCATATGAGATCAGTGCACAGCAATAAAAGACCGTTTGAGTGTAAAGTTTGCTGTAAATCATTCAAACTGAAGTCACATTTAGTGAAACATAGCAAAATGCACAGCTCTGAAAAGCCTTTTAAATGTGAGTTATGTCCAGCGACATTCAGATACCGGCAAAGTGCGAAAGAACATCTACGTGTACATTCTAACGAAAAACCATACCTTTGCAGTATTTGTCCCAAGTCTTTTAGGTATTCGAGTCAGTTATCAGTGCATGAGAAAAGGCACTCAAAAAAAAGAGCTTTTGTCTGTGATTTGTGCAAAACAAAGTTTAAAACAAGGGAAACCATCAGCAAGCACATAAGAATAGTTCATTTAGGGGAGAAACCAGTGAAGTGCAATTTATGTCCCTACAAAACTATAAATACTTCATCTTTAAAGAAACACATGGCAGTCCATGAAGAAACAAGGCCATTTAAATGTACTTTatgttctgcaaaatttgcagtaAGCCTATACCTAAAAATTCACTTGAAAACTATTCACAGTGGAAGATCGTTTGATTGTGAGATTTGTCACATGAAATTTCCTCGCAAGAGGTCCTTAACGCTGCATCGTAATGTGCACAAAGAGGAAAGACAATTTAAGTGCGATTTATGCTGCACTGAATTTTCCAAGTCAGTGGACTTGACAAAACACATGGACGGGCATGATGCGGGTGGGAAATTCTTCTGCGCCCATTGCCCTTCCGCTTTcaaatacaaaaagaaaataattactcatttgaaaatacactctATCATGGTTGACAAAGAAATGACATCTCCAGTCGTCTTAGTCCAGAAACTCACAGCAAAAGAGAAATACTCTTCGCCTACAAATGTTACTTCAAAGATGCCTCCAGTTAAATATAAGTCCAATGATGTAAGTCCCTTTCACAAAGTCATTAAAAGGGAATTTTCTGTCCAAATTGTGCCTGTTATAAAGCAAGAGCCTTGTTATGAATTTGAAGGAGGTACTTCTTCGCACTTAAATATCTCTATTAATCTTGTCGGAGTTAATGTAAAAAATGAGATTAAACCGGAAGTAACCGCTGAACTAGTAGGCAGTTTCCCCCTAAGTTTAAGCAGCAATCAGCCACAGTATCAGGAGACATTGAAAATCGAAAACAGGTCTGAGCAAGGTGAAATTGAGTACCATTCCAAAAACAGCTCTGAAAATTGTAGCAGAATATCTCCAAGAATCTTGGAACACCATGAAGTGGAGAATACAAAATGTAATGATGATACCATGACCCTCTCTTCCTTCATATCAAATGTCACTGTAAAGCTTGTGGATATGTTTTCTGATGAGGCTCGGAAGCGTGGTGAGGTACACTCCAGCAACAGTTTTTGCTCGTGTATTTTTTGTCGCAGAGTATACATGGACACATCGAATGCTCATTTACTCtctatgaatttaaaaaatgcctcAGCACTTGGTCCTCCAAAACCCCAACAGAAACTTACAAATCCTTCTAGCCGAAgattatcaaataaaaaaaaaatattattcaggTGTGCTGTTTGTCCTGTGCGATGCAAAAATTTGTCCAGCTGGAAGGCACATTGGGTTGTGCATTGGGGAAACTACAAATGCTTTTTGTGCAAAGTGAGGTGTAAATCTGAAAAGAAGTTTGAGAATCATATGAGTGATGCACACAGCATTGAAAAAGCTTACAGATGCAGTATTTGCTCCAAATCATTTagacaattaaattgtttactCCAACACTTTAAGGTGCATATTGAAGACCGCCCATTCAATTGTGATCTTTGCTCCAAGGCGTTCAAATTTCATCAGCATTTAACCTTACACAAGGAGAATATTCATTTGAAAGTCAAACCATATTCCTGTGACCTCTGCACAGCAAAATTTAGTACGAAGCCAACACTGTCAGATCATGTGAGATCAGTGCACAGCAATAAAAGACCGTTCGAGTGTAAAGTTTGCTGTAAATCATTCAAACTGAAATCACATTTAGTGAAACACAGCAGAATGCACAGCTCTGAAAAGCCTTTTAAATGTGAGTTATGTCCAGCGACATTCAGATACCGGCAAAGTGCGAAAGAACATCTACGTGTACATTCTGATGAAAGACCATACCATTGCAGTATTTGTCCTAAGTCTTTTAAGTATTCGAGTCATTTATCAGTACATGAGAGGaggcacacaaaaaaaagagcTTTCGTCTGTGATTTGTGCAAAGCAAAGTTTAAAACAAGGGAAACCATCAGCCAACACATAAGAGTTGTTCATTTAGGGGAGAAACCAGCGAAGTGCAATTTATGTCCTTACGAAACTATAAGTACCTCATCTTTAAAGAAACTTATGGCAGTCCATGAAGAAAGTAggccattcaaatgctcataa
- Protein Sequence
- MADEQMTFPVVLIERLAANEKYSVAENDTPKMPPVECKSQDISPSQEVIKREFSAQIVPVIKQEPCYEFEGGTSSHLDISINLVGFNVKNEIKPEVTAELVGSFPLSLSSNQPQYQETLKIENRSEQSEIEYHSNNSSENCSRISPRILEHHEVENTKCNDDTMTLSSFISNVTVKLVDMFSDEARKRGEVHSSNSFCSCIFCRRVYMDTSNAHLLSMNLKNASEHGPPKSQQKLANHSGQRLSNKKKKLFRCAVCQVQCKNISSWKAHWVVHKGNYKCFLCKVRCESEKKFENHMRDAHSIGKAYKCSICSKSFRLLSCLLQHFKVHIEDRPFKCDLCSMAFKIHQHLTVHKENIHLKAKPYSCDLCTAKFSTKPILSDHMRSVHSNKRPFECKVCCKSFKLKSHLVKHSKMHSSEKPFKCELCPATFRYRQSAKEHLRVHSNEKPYLCSICPKSFRYSSQLSVHEKRHSKKRAFVCDLCKTKFKTRETISKHIRIVHLGEKPVKCNLCPYKTINTSSLKKHMAVHEETRPFKCTLCSAKFAVSLYLKIHLKTIHSGRSFDCEICHMKFPRKRSLTLHRNVHKEERQFKCDLCCTEFSKSVDLTKHMDGHDAGGKFFCAHCPSAFKYKKKIITHLKIHSIMVDKEMTSPVVLVQKLTAKEKYSSPTNVTSKMPPVKYKSNDVSPFHKVIKREFSVQIVPVIKQEPCYEFEGGTSSHLNISINLVGVNVKNEIKPEVTAELVGSFPLSLSSNQPQYQETLKIENRSEQGEIEYHSKNSSENCSRISPRILEHHEVENTKCNDDTMTLSSFISNVTVKLVDMFSDEARKRGEVHSSNSFCSCIFCRRVYMDTSNAHLLSMNLKNASALGPPKPQQKLTNPSSRRLSNKKKILFRCAVCPVRCKNLSSWKAHWVVHWGNYKCFLCKVRCKSEKKFENHMSDAHSIEKAYRCSICSKSFRQLNCLLQHFKVHIEDRPFNCDLCSKAFKFHQHLTLHKENIHLKVKPYSCDLCTAKFSTKPTLSDHVRSVHSNKRPFECKVCCKSFKLKSHLVKHSRMHSSEKPFKCELCPATFRYRQSAKEHLRVHSDERPYHCSICPKSFKYSSHLSVHERRHTKKRAFVCDLCKAKFKTRETISQHIRVVHLGEKPAKCNLCPYETISTSSLKKLMAVHEESRPFKCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -