Btab007981.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bemisia tabaci
Gene Symbol
-
Assembly
GCA_903994105.1
Location
NW:1381262-1385504[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00015 0.0066 16.5 0.3 3 23 230 250 229 250 0.98
2 20 7.7e-06 0.00035 20.5 0.9 1 23 256 278 256 278 0.98
3 20 0.00075 0.034 14.2 5.8 1 23 284 306 284 306 0.98
4 20 0.15 6.6 7.0 4.7 2 23 317 338 317 338 0.97
5 20 3.3e-05 0.0015 18.5 1.3 1 23 344 366 344 366 0.97
6 20 0.00031 0.014 15.5 0.2 1 23 372 395 372 395 0.96
7 20 0.0084 0.38 10.9 2.8 1 23 401 423 401 424 0.95
8 20 6.5e-05 0.0029 17.6 0.2 1 23 430 452 430 452 0.99
9 20 8.7e-05 0.0039 17.2 1.9 1 23 458 480 458 480 0.98
10 20 0.00071 0.032 14.3 0.5 1 23 486 508 486 508 0.98
11 20 0.052 2.3 8.5 6.8 1 23 514 536 514 536 0.98
12 20 0.00014 0.0064 16.5 0.3 1 23 542 564 542 564 0.98
13 20 0.0013 0.057 13.5 2.0 1 23 570 593 570 593 0.96
14 20 2.3e-05 0.001 19.0 3.2 1 23 601 624 601 624 0.96
15 20 0.0051 0.23 11.6 1.5 1 23 630 652 630 652 0.98
16 20 0.00044 0.02 15.0 0.0 1 23 658 681 658 681 0.96
17 20 0.14 6.3 7.1 3.2 1 23 687 709 687 709 0.98
18 20 0.12 5.5 7.3 7.9 1 23 715 737 715 737 0.99
19 20 0.017 0.78 9.9 1.4 1 23 743 766 743 766 0.94
20 20 0.23 10 6.4 1.7 1 23 771 794 771 794 0.96

Sequence Information

Coding Sequence
AtgataaaaaatcatgaagCATCACGAGAGCTGGTCAGTCTCCATCACTTTGAGAGTTCTGCTCTGAATGAGCCTTCTGATGTTTCACCAGATCTAATTTTTCCAAGCTTGAAATTTGAGCCAAGTGAGTTGCAAAGTGACGAAAGCACTCTCTCAGGGTCCGATAGCTTGAATAATTTGAAGGTTTCAGCCCTTGAAATGGAGggaaaattagatgaaaaaccGAACGTAACGCACGAGTTAGTGTCCTGTTTACCAGCTGGTGAGAGAGAAATGAAACCACTACTCCAGACAGTGAAAACAGAGATCAATACCGCATCCAGCGATGGAGAACACCGTCAGGATGTGGGGTTTAATATGGATGATCATAAATTTGCGTCTCCTGAACAccctttgagaaaaaaagaccTTGAGACAGATGCTGGGTCAAACGTTTACTACGATCGAAATTGTATACGATTAAAAGATTTCTCAGTTGTCCTTGAAGATATTTATTTGAAGGACACTTGGAGAGTTAGTAAAAATGATCATCATGATGGGCCTTGCTCACATGAGAATTGTCGAAATGGATCTTATCTGGGCAATTCAAGATCGAAGTTACCATTCAGAGCAGAGAGTGATGCAGTCATCTTGACCCCAAATACACATACAAAAGAAAGCAAGAAAAAGCGAAGAATACAGGGTGCTTGTGATATttgctcatatgtttttaaaTCTGGGCCGCAATTTAAGAAGCACATGTTGACACATGGCGTCAAGAAACCATTCAGCTGTAATCTTTGCCCAGCGAAGTTCAGCAGGTCTGATAATGTCAAGTCTCATATGATGAAGCATAGTAAATCTCGACCATTTCAATGCAGTGAGTGTCAGGCAAAGTTCAAGACCAAATGTACTCTGCGCCACCATTTAGAGGTACATAAAGTAGTGAAGCCACCACCGGTAACGCCAACATGCCATATATGCTTCATCAAGTGCAAAAGTAACTATGTGCTGAAAGTCCATTCACGAATTCATACTGATGAAAGACCCTACAGCTGCAACTTTTGTGACGCTTCGTTCAGACAGTTAAGCTCTCTTCAGTCCCATAAAGTCACTCACCTAAAAGAGAAGCCGTTCAGTTGTGACATCTGTGGAGGCAAATTCTCACTGAAGAGGAATGTAGCTAAACACATTCGAGAAGTGCACAATAAAGAACGACCTCACAGTTGCGATATTTGTTCTGCAACATTTTCGCATCGTGGAGCTGTAATAATTCACAAAGAGACCCACCATAGTAAGGAACGGTCTTATAAGTGCAATTTATGCCCAGCTGCGTTCAAAACAAAGGGAGGATTATATGCACACTCACAAACTCACAATGAACATAGACCTTTCAAGTGTGAGCACTGTCCTGCATCATTCAAGGCCAAAAGGACTTTGAAAGAGCATCAGATAATGCACACTGGTGAAAGATCATTTGTTTGTAGTATTTGCTCGCTCGCATTCCGATGGGAAAGCAACTTGAGGGatcataaaaaaacacattctacTGAAAGACCATTTAAGTGTGAGTTTTGTACCAAACGATTCAAGACAGTAAAGTTGTTAAAATGTCACACAATGACGCATAATGATGAGAAACCATTCCAGTGCGAGGTTTGCTCAGCAGTCTTCAAAATTCGTAGAAACTTAAACTCTCACATGGTGTCGCACAGTGAAGCGCGGCCTTTTAAATGTGATCTGTGTCCTGCTTCTTTTAAGACAAACAACGTTCTAAAGTCTCATGTTCAAAATTGTCACAATGCCAGTAATGAAAGACCTTTTGAATGTGAGCTTtgttctaaaaaattcaaacaaaaacaacatctGAAGGGACACATGAAGGAGGTTCACACCACTGATCGACCATTTAAGTGTAGTCTTTGCCCTGTCGCATTGAAATGCAGGAAAAATCTTACGATCCATATGCGAGTTCACACCGGAGAAAAACCTTTTAAATGTAACCTGTGCCCAGCAACATTCGCGCAAAGCGGTGCGGTGAAATCGCACATTCAGGCTGTACATAGTGATGAAAGACCCTTCAAATGTGTACTATGCCCGAAGCAGTTCAAGTGTGCTAAAAGCGTTAGACTTCACACAATGACGCACAATGAAGCAAGGCCTTTCAAATGTGAGCAAtgctcaaaaaatttcaagtgccTCAGAGATATTAGGCACCACATGAAAACGCATGCCATAGCTTGGAATTTCAAATGCCACCTCTGCCAAGCCAGGTTCGTTGAAGCAAGTCAGCGCGAAAAGCATGTACTGGAAAAACATGGAGGGAAACGCTACACTTGTGCGCACTGTCTTGGTACATTCAACTGGAAGTTTAATTTGACGGTTCACTTAAACAATACGCATCCAGAAGTCGCTAGTTAG
Protein Sequence
MIKNHEASRELVSLHHFESSALNEPSDVSPDLIFPSLKFEPSELQSDESTLSGSDSLNNLKVSALEMEGKLDEKPNVTHELVSCLPAGEREMKPLLQTVKTEINTASSDGEHRQDVGFNMDDHKFASPEHPLRKKDLETDAGSNVYYDRNCIRLKDFSVVLEDIYLKDTWRVSKNDHHDGPCSHENCRNGSYLGNSRSKLPFRAESDAVILTPNTHTKESKKKRRIQGACDICSYVFKSGPQFKKHMLTHGVKKPFSCNLCPAKFSRSDNVKSHMMKHSKSRPFQCSECQAKFKTKCTLRHHLEVHKVVKPPPVTPTCHICFIKCKSNYVLKVHSRIHTDERPYSCNFCDASFRQLSSLQSHKVTHLKEKPFSCDICGGKFSLKRNVAKHIREVHNKERPHSCDICSATFSHRGAVIIHKETHHSKERSYKCNLCPAAFKTKGGLYAHSQTHNEHRPFKCEHCPASFKAKRTLKEHQIMHTGERSFVCSICSLAFRWESNLRDHKKTHSTERPFKCEFCTKRFKTVKLLKCHTMTHNDEKPFQCEVCSAVFKIRRNLNSHMVSHSEARPFKCDLCPASFKTNNVLKSHVQNCHNASNERPFECELCSKKFKQKQHLKGHMKEVHTTDRPFKCSLCPVALKCRKNLTIHMRVHTGEKPFKCNLCPATFAQSGAVKSHIQAVHSDERPFKCVLCPKQFKCAKSVRLHTMTHNEARPFKCEQCSKNFKCLRDIRHHMKTHAIAWNFKCHLCQARFVEASQREKHVLEKHGGKRYTCAHCLGTFNWKFNLTVHLNNTHPEVAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-