Btab007983.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- Zbtb3
- Assembly
- GCA_903994105.1
- Location
- NW:1401581-1408262[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00028 0.013 15.6 1.2 1 21 310 330 310 331 0.96 2 17 4.1e-05 0.0019 18.2 1.1 1 23 355 377 355 377 0.98 3 17 4.7e-06 0.00021 21.2 0.4 1 23 383 406 383 406 0.97 4 17 0.00011 0.005 16.8 0.3 2 23 415 437 415 437 0.95 5 17 0.14 6.1 7.1 0.5 1 23 443 467 443 467 0.86 6 17 2.5e-05 0.0011 18.9 0.4 1 23 473 496 473 496 0.96 7 17 0.00059 0.026 14.6 0.2 1 23 501 524 501 524 0.95 8 17 0.00011 0.0048 16.9 0.3 1 23 530 553 530 553 0.95 9 17 0.00026 0.011 15.7 0.3 1 23 561 584 561 584 0.97 10 17 1.7e-05 0.00076 19.4 2.0 1 23 590 612 590 612 0.98 11 17 0.015 0.68 10.1 1.3 1 23 618 640 618 640 0.98 12 17 0.00029 0.013 15.5 1.7 1 23 647 670 647 670 0.96 13 17 0.00014 0.0061 16.6 1.2 1 23 676 699 676 699 0.95 14 17 0.022 1 9.6 1.9 1 23 705 728 705 728 0.95 15 17 0.00053 0.024 14.7 0.1 1 23 733 756 733 756 0.97 16 17 0.00019 0.0086 16.1 1.0 1 23 762 785 762 785 0.97 17 17 0.00036 0.016 15.2 2.0 1 23 791 813 791 813 0.98
Sequence Information
- Coding Sequence
- ATGGAGCAATCATTTCTGGTAGGGAGTTCAGCCGGTTCAGGCCCTGAAAACTCATCCATCGGAAACCAAGAGGCAACAGTTATAGGATTAGTGCAGTCTTTATTCACTCCATTACCAGCAAAAACTCTTCAGTACAGAAATATCGATCCTGTAGGATGCGGCGCAAGTCTGATGAATGATTCTCTTTTGTCAATGGTAAAGTCAACTGTGAAAGTGGAAGAAGAAGTTTCCGAAAATAAAGATGTAATTCTCGAACTTGTGAGTTACCCGTCCTCCAGTTCTGACGTTCCTCTGAAATATGAAGATGATGTATTGGACGAAAGGATACAAGAAGCACCCGTCAgttcaaacaaacaaaaagcaAGCTGTGGCAATCCAAGCAATGTAACAACAGAGGATGTACCAAAcatcgccaattttgaaagtgatctgaattttttgaatcaaaGTAACATTGTGAACAATATAGAAGTAAAAGTGAAGGAAGAGTGTTCACACGAAGAGGTCATAACCAGTGAGCTGGTCAAATATTCTTCTGCGGACTCAAATGAAGCATTCAAGTCTGAAGATGACAGCTTTGAAGAGGAACCCTATTTTCCACTTGATGACAGCCCTGCGCAGGAGAAAGGCTCAGAAAAAAACTGTTGCAAGGATCAAGTCAGGTCCAAGGCCAGTGTATCAAAATTGAGAAATGTTTCCGTCAAACTTGTTGATATTTTCCCAAACAGCGTTCGGAAGCTTGGCAAAGCCCACTATCAGGATAAATCGTGTGCTTGCATTTTCTGTCGAGGAGAGTACAAGTGGACTGCTGGTTTGCCCTATCACCCCAAAGATATCGACAAACTGTCAAGAGTAGCTCCACATGAATCAGCCCTTAAATCGGGGCAAGATTCTACTGACAGTTCGGTTTTATCCAACAAAGTTTTGTTTGAATGCAGTGAGTGTTCAAAAAAGTTTACCCTCAAAAATAGTTTAAGCaaacatttgaaagaaaattgcaaagttGTGAAAAGTAAAGAGGGTTATACAGCAAAATATCGTAAAaagcggggaaaaaaaaattatatttgcaCTGAATGTTCTCGGGATTGCAAAAGCAATGCAGAGTTACTTAATCACATGAGAGTGCATACGAAAGAAAGACCTTTTAGCTGCGAAGTATGCTCGAAATCGTACACTCAAAAATCAGCCATGAACGCTCATATCAGACAAGTacatttgaaattaaaaccaATTAATGCAACTTGTAGTTTGTGtcccaagaaattcaattcTCAGTACAAACTTGCAGTGCATGTAAGGGCAGTGCATCTTCAAGAAAAACCTTACAGTTGCAAGTTGTGTCCGGCTAAGTTCGCCTACTCCGGCCAGAGCCTCAAAGTGCATATACGGTCAGTTCACAGGAAGGAAAAACCATATGCTTGCAGCCTGTGCTCGGCATCATTTTCACAGAATAGCCATTTAGGAGTTCATATGAGGGCTATacatttaaaccaaaaattcagCTGTGAGCTATGCCCGGCCAAATTGGCGCAAAAATCCGAGCTTAGACGTCATTACAAAGCCGTGCATCTTAAAGAGAAACCATATGAATGCAGTGATTGCGCTAAAACCTTCCCCTTCAAATCAGCACTGGAAAGTCACAAAGATTCAGTGCACAATCCTAATCGTGAAAGAAATTTTAGTTGTGAGATTTGCTCTGCTGCTTTCATAACAAAAGAAGGCTTACATCTGCATCTACGATCCATCCACAGCGACGAACGACCGTTTACCTGCGACATTTGTCAAGCCACTTTCAAAAGGAAATTCACCATGAAAGCACACTTACGTTCTCACGATCCTGAGAAACGCTTTAGTTGTGACGTGTGCTTTGTGAAATTAAAATCCAAACGGTCCCTTGAGTATCATCTGCAATCGCATTGTGGCGAAAGACAATGTTTTACTTGTCACATTTGCTCGCTTGAATTTTCCTCCAAGTCATACGTCAAACTTCATCTCAAAGCAGTGCATGAGAACAAAAGAATGTTCAGCTGCAAACTTTGCCCagcaaaattcaaacaaaatcagCACTTGAACATACATTTGCAGGGAGTGCACCTAAAAGGAAAGACATTTAATTGTGCGCACTGTCAAGCCAAATTTCGTATCAGACAAAGTTTGAACTTACATATAAAGGCTAAGCATCTTGCACCATCTTACATTTGCGACTATTGCTCTGCAAAATTTGCGCTGAAAGGCGGTTTAAAGCTTCATATACGAGTAgtacatttaaaagaaaaactgttTAGTTGCCACCTGTGCCCCGCAAAATTTGGTCAggggtcaaatttaaaaagccATGTGAGAAGAATCCACTTGGAAGACAAACCCTTTAGCTGTGACGTCTGCACCATTAAATATCAATACAAAAAGGACCTTAAAAAACATATGCTCTCCCATTCGGAAAGAACGGAGGATAGTGTCGGAGGTGAGCTCCACTCTTAA
- Protein Sequence
- MEQSFLVGSSAGSGPENSSIGNQEATVIGLVQSLFTPLPAKTLQYRNIDPVGCGASLMNDSLLSMVKSTVKVEEEVSENKDVILELVSYPSSSSDVPLKYEDDVLDERIQEAPVSSNKQKASCGNPSNVTTEDVPNIANFESDLNFLNQSNIVNNIEVKVKEECSHEEVITSELVKYSSADSNEAFKSEDDSFEEEPYFPLDDSPAQEKGSEKNCCKDQVRSKASVSKLRNVSVKLVDIFPNSVRKLGKAHYQDKSCACIFCRGEYKWTAGLPYHPKDIDKLSRVAPHESALKSGQDSTDSSVLSNKVLFECSECSKKFTLKNSLSKHLKENCKVVKSKEGYTAKYRKKRGKKNYICTECSRDCKSNAELLNHMRVHTKERPFSCEVCSKSYTQKSAMNAHIRQVHLKLKPINATCSLCPKKFNSQYKLAVHVRAVHLQEKPYSCKLCPAKFAYSGQSLKVHIRSVHRKEKPYACSLCSASFSQNSHLGVHMRAIHLNQKFSCELCPAKLAQKSELRRHYKAVHLKEKPYECSDCAKTFPFKSALESHKDSVHNPNRERNFSCEICSAAFITKEGLHLHLRSIHSDERPFTCDICQATFKRKFTMKAHLRSHDPEKRFSCDVCFVKLKSKRSLEYHLQSHCGERQCFTCHICSLEFSSKSYVKLHLKAVHENKRMFSCKLCPAKFKQNQHLNIHLQGVHLKGKTFNCAHCQAKFRIRQSLNLHIKAKHLAPSYICDYCSAKFALKGGLKLHIRVVHLKEKLFSCHLCPAKFGQGSNLKSHVRRIHLEDKPFSCDVCTIKYQYKKDLKKHMLSHSERTEDSVGGELHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -