Btab002122.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:2594698-2603177[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00033 0.015 15.4 4.8 2 23 211 232 210 232 0.97 2 19 0.24 11 6.4 7.1 8 23 245 260 238 260 0.88 3 19 0.00032 0.015 15.4 4.7 1 23 266 288 266 288 0.98 4 19 3.5e-06 0.00016 21.6 4.3 1 23 294 316 294 316 0.98 5 19 0.0012 0.054 13.6 6.9 1 23 322 344 322 344 0.98 6 19 0.004 0.18 11.9 6.0 1 23 350 372 350 372 0.98 7 19 1.1e-06 4.9e-05 23.2 2.7 1 23 378 400 378 400 0.98 8 19 4.4e-05 0.002 18.1 4.9 1 23 406 428 406 428 0.98 9 19 0.065 2.9 8.1 2.3 1 17 434 450 434 451 0.94 10 19 0.00014 0.0064 16.5 6.9 1 23 685 707 685 707 0.98 11 19 2.3e-05 0.001 19.0 9.5 1 23 713 735 713 735 0.99 12 19 4.7e-05 0.0021 18.0 6.1 1 23 741 763 741 763 0.98 13 19 6e-05 0.0027 17.7 4.5 1 23 769 791 769 791 0.98 14 19 0.00022 0.0099 15.9 5.4 1 23 797 819 797 819 0.98 15 19 1e-05 0.00047 20.1 4.3 1 23 825 847 825 847 0.98 16 19 0.00029 0.013 15.5 6.9 1 23 853 875 853 875 0.98 17 19 1.9e-05 0.00084 19.3 6.3 1 23 881 903 881 903 0.98 18 19 0.00013 0.0057 16.7 6.0 1 23 909 931 909 931 0.98 19 19 0.00071 0.032 14.3 5.1 1 23 937 959 937 959 0.98
Sequence Information
- Coding Sequence
- ATGGAACTGGATAACGTCCCCGAAGTAACGTACGCAGGTACTTTCAAGCATGAATCATCAGTGTCGGATACGAAATCGGCATTTGGCGATGACCACGCCGATCTTGTCCCCCAGCGTGTGAAAGGAGAGAACGGATCTTCTTCATGTGATGGTGTTATCTCACCTGGACCGCTCCAAGGCGATTCTCTGTTCGGTCTTTCCGCTCGCGTAAAAGTCGAAGCAGCCGAAAGTTTATCCGACCTCTTGCATACCAGTATTGAAATTAAGGAAGAAGACACTTCGCAATCCGACCAATCGGAATGCCCAGAAAAAGACAACGCAAAAGATTCCGGAAATGGTTCGCCTCATactttgaaacatgtttcactGACTCCAACTGCTGGAAGTGGTTGCATTAATGGTCAACCTCCCCACCAACTGCAAGATCTCCATGGAATTAACTTGGAATCTAATGAAAAAGCATGTAAAAGCAAACAGTTCAACGAGCCTCCTATTGAATGGAAAGTATTTCCGACCGAAAGAACTGAAATCCGTTACAAACCAGTCAAAATCACCCAACGTTCTGTATCTTGCTCGTCTGAAAACCTtccaaaacaacgtatgcgGACGCAAAATGGCGAGAAACCGTTAAGTTGCGGTCATTGCTCATCCTCTTTTAGACATAGAAATGCTTTAAAGGAGCATATGcgaacgcatactggcgagaaacctttcaggTGCAGTCATTTCTCTACCTCCTTTAGGCAAAAACACCATTTAAATGAACATATTCGAACGCATACTAgcgagaaacctttcagctgtagtcattgctcttcctcttttgGACGTAGAAATACTTTAAAGCAGCATATGCAAACGCATACcggcgagaaacctttcagctgcagtcattgctcttctTCTTTTAGCCGCAAAGATAATTTGAAGGTACATATTCGAAAGCAcactggcgagaaaccattcatttgcagtcattgctcttcctcCTTCCGTCACAGAAGTGCTTTAAAGGAGCATATTCATacgcatactggcgagaaaccttttAGCTGTagtcattgctcttcctcttttaaACATGGAAAAACTTTGAAGGAGCATATTCGAATgcatactggcgagaaacctttcagctgCGGTCATTGCTCCACCTCCTTCAGTCAAAGAAGTAATTTAAAGGTGCATATTCAAATgcatactggcgagaaacctttcagctgCAGTCATTGCTCAGCCTCTTTTAGACATAGGAATGCTTTAAAGGAGCATATTCGAACGCATACcggcgagaaacctttcagctgcagtcattgctcttcctcttttagcCGGAAACATACTTTAAAAGATTCTAAGTGGATTGGCCCAGACGCATATGGACACTCCTCAAGATACTACTCTGAAGAATACATACCACGCGTGATGGATCCGGATAACGTCCCCGAAGTAACGTACGCAGGTACTTTGAAGCATGAATCATCAGTGTCGGATACGAAATCGGCATTTGGCGATGACCACGCCGATCTTGTCCCCCAGCGTGTAAAAAGAGAGAACGGATCTTATTCATGTGGTGGCGTTCTCTCACCCGGACCGCTCCAAGGCGATTCTTTGTTCGGTCTTTCCGCTCGCGTAAAATTCGAAGTGGACGAAAGTTTAACCGACTTGTTGCATACAAGCATTGAAATTAAGGAAGAAGACACTTCGCAATCCGACCAATCGGAATGCCCAGAAAAAGACAGCGCAAAAGATTCCGGAAAGGGTTCGCCTCATactttgaaacatgtttcactGACTCCAACTGCTGGAAGTGGTTGCATTAATGGTCAACCTCCCCACCAACTGCAAGATCTCCACGGAATTAACCTGGAATCTAATGAAAAAGCATGTAAAAGCAAACAGTTCAACGAGCCTCCTATTGAATGGAAAGTATTTCCGACCGAAAGAACTGAAATCCGTTACAAACCAGTCAAAATCACCCAACGTTCTATACCTCCATCGTGTGAAAACCTtccaaaacaacgtatgcgGACGCATCACAGCAAGCAACCTTTCatttgcagtcattgctcttcctcttttaaTCGAAAACATAATTTAAAGCTACATATCCGAAAgcatactggcgagaaacctttcaggTGCAGTCATTGCTCTACCTCCTTTAGGCAAAAACACCATTTAAATGAACATATTCGAACGCATACCGGCGAGAAACCTTTTagctgcagtcattgctcttcctcttttagcCGGAAACACGATTTAAATCTACATATTCGAACGCATACcggcgagaaacctttcagctgcagtcattgctcttcttcttttagccgcaaaaattatttgaaggTGCATATCCAAACGCACACcggcgagaaacctttcagctgtagtcattgctcttcctcttttagACATAGAAATGCTTTAAACGAGCATAttcgaacgcatactggcgagaaacctttcagctgcagtcattgctcttctTCTTTTAGCCGCAAAGAGTATTTGAAGGTGCATATCCGAACGCACACcggcgagaaacctttcagctgtagtcattgctcttcctcttttagACATAGAAATTCTTTAAAGGAGCATATCcgaacgcatactggcgagaaacctttcagctgcagtcattgctcttcttcttttaaCCGCAAAGATCATTTGAAGGTGCATATCcgaacgcatactggcgagaaacctttcagctgcagtcattgctcttcctgttttagtcaaaaaaatgCTTTAAAGGAGCATATCCGAACACACAGAGGCGAGAAAACTTTCAGCTGCAGTCATTGCTCATCCTCTTTTAGACATAGAAATGCTTTAAAGGAGCATATTCTAACGCATACGGCGAGAAAGCTGTCAGCTCCAAAcattgctcttcctcttttatcCGAAAACAGGATTTGA
- Protein Sequence
- MELDNVPEVTYAGTFKHESSVSDTKSAFGDDHADLVPQRVKGENGSSSCDGVISPGPLQGDSLFGLSARVKVEAAESLSDLLHTSIEIKEEDTSQSDQSECPEKDNAKDSGNGSPHTLKHVSLTPTAGSGCINGQPPHQLQDLHGINLESNEKACKSKQFNEPPIEWKVFPTERTEIRYKPVKITQRSVSCSSENLPKQRMRTQNGEKPLSCGHCSSSFRHRNALKEHMRTHTGEKPFRCSHFSTSFRQKHHLNEHIRTHTSEKPFSCSHCSSSFGRRNTLKQHMQTHTGEKPFSCSHCSSSFSRKDNLKVHIRKHTGEKPFICSHCSSSFRHRSALKEHIHTHTGEKPFSCSHCSSSFKHGKTLKEHIRMHTGEKPFSCGHCSTSFSQRSNLKVHIQMHTGEKPFSCSHCSASFRHRNALKEHIRTHTGEKPFSCSHCSSSFSRKHTLKDSKWIGPDAYGHSSRYYSEEYIPRVMDPDNVPEVTYAGTLKHESSVSDTKSAFGDDHADLVPQRVKRENGSYSCGGVLSPGPLQGDSLFGLSARVKFEVDESLTDLLHTSIEIKEEDTSQSDQSECPEKDSAKDSGKGSPHTLKHVSLTPTAGSGCINGQPPHQLQDLHGINLESNEKACKSKQFNEPPIEWKVFPTERTEIRYKPVKITQRSIPPSCENLPKQRMRTHHSKQPFICSHCSSSFNRKHNLKLHIRKHTGEKPFRCSHCSTSFRQKHHLNEHIRTHTGEKPFSCSHCSSSFSRKHDLNLHIRTHTGEKPFSCSHCSSSFSRKNYLKVHIQTHTGEKPFSCSHCSSSFRHRNALNEHIRTHTGEKPFSCSHCSSSFSRKEYLKVHIRTHTGEKPFSCSHCSSSFRHRNSLKEHIRTHTGEKPFSCSHCSSSFNRKDHLKVHIRTHTGEKPFSCSHCSSCFSQKNALKEHIRTHRGEKTFSCSHCSSSFRHRNALKEHILTHTARKLSAPNIALPLLSENRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -