Btab009003.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bemisia tabaci
Gene Symbol
-
Assembly
GCA_903994105.1
Location
NW:541752-544034[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2.1 95 3.4 0.1 12 23 159 170 155 170 0.88
2 19 0.0011 0.051 13.7 3.1 1 23 176 195 176 195 0.94
3 19 6.5e-06 0.00029 20.7 2.0 1 23 201 223 201 223 0.99
4 19 0.00067 0.03 14.4 7.4 1 23 229 251 229 251 0.98
5 19 2e-05 0.00091 19.2 3.3 1 23 257 279 257 279 0.98
6 19 6e-05 0.0027 17.7 3.6 1 23 285 307 285 307 0.98
7 19 0.0023 0.1 12.7 4.9 1 23 313 335 313 335 0.98
8 19 0.0031 0.14 12.3 6.3 1 23 341 367 341 367 0.97
9 19 0.00012 0.0053 16.8 3.2 1 23 373 395 373 395 0.98
10 19 2.7e-05 0.0012 18.8 0.6 1 23 401 423 401 423 0.99
11 19 1.3e-05 0.00058 19.8 3.3 1 23 429 451 429 451 0.98
12 19 0.00019 0.0087 16.1 4.0 1 23 457 479 457 479 0.98
13 19 4.6e-06 0.00021 21.2 1.7 1 23 485 507 485 507 0.98
14 19 6e-05 0.0027 17.7 3.6 1 23 513 535 513 535 0.98
15 19 2.4e-06 0.00011 22.1 1.8 1 23 541 563 541 563 0.98
16 19 3.7e-06 0.00017 21.5 6.5 1 23 569 591 569 591 0.98
17 19 0.00015 0.0067 16.5 2.8 1 23 597 619 597 619 0.98
18 19 2.4e-05 0.0011 19.0 3.4 1 23 625 647 625 647 0.98
19 19 0.00017 0.0075 16.3 5.0 1 23 653 675 653 675 0.98

Sequence Information

Coding Sequence
ATGCAGGCCGTGCCTGAAGCAAGCACCAGCTCGGAGTCTAGCGGTATGTCTGACAACCCATCTTCCCACTCCGTAGAAAGTCACCTTCAAGGTCCCAACAATACCAGACTTGCATCCGCAGGAGAGATCCAAGAAACCTTCCTCTCGTCCATCTTCGATCGTCCCTCCGCTCTTCCCCCCAAAATTGAATGCGAGGATGAAAAAGTTGATGCAAGTTGGACCAACCAGCTACACACAAGTATTGACATTAAGAGTGAACCCACTCCCCAGACGGATGAGTCAGAACTCAGGTTGGGACGAGGAGGAGCAGAACACGATTTGGAGAATGATATTCGTGATTTTCTCCTAATAACAGCGCGAGTGAAGAGAGAGAACATGAGCACTCCACTTCCCGACGAATGTAATGAAAATTTGCTTGACCTATCACTCACGAACATCGAAATTAAGAGGGAACCCCCTACCCAAACAATCGAATCGGAATCAAAGTTAATCGAACATATTAGAACGCACGCTCGTGAGAAAACATTCAGTTGCAATCATTGCTCGGCCTCATTTGCCAATTTGAAGAGacacatgcgaacgcacactggcgAGAAACCATATAGTTGCAGTTATTGCACGGCATGCTattctcagaaaattaatttgataaTTCACATCCGGACGCATACTggagagaaaccattcagttgcagtcactGCACGGCATGCTTTGCTCAGAAACGGTGTTTAACGGCACATGTTCGcacgcacactggtgagaaaccattcaattgcagtcattgcacggcaAGCTTTTCTCAGAAACAGTCTTTGACGGAACATGTtcgcacgcatactggtgagaaaccattcagttgcagtcattgcgcGGCATGCTTTGCGCGCAAAAATTCTCTAACGGCACATGTtcgcacgcatactggtgagaaaccattcagttgcagtcattgcacgtCATGCTTTGCTCGCAAACAGTCTTTAATAGATCATGTTagcacgcatactggtgagaaacaattcagttgcagtcattgctcctcctcGTTCAACacatgcttttctcgcaaaaattcTTTAACGGCACATATTCGAACGCATACTGgggagaaaccattcagttgcagtcattgcacagCATACTTTGCTCACGAATCTTCTTTAACGGCACATGTtcgaacgcatactggtgagaaaccatatAGTTGCAGTTATTGCACGGCAAGCTTTGCTCTCAAAAATTCTCTAACGGCACATGTCCGcacgcacactggtgagaaaccattcagttgcagtcattgcacggcaAGCTTTTCTCAGAAACAGTCCTTGACGGAACATGTtcgcacgcatactggtgagaaaccattcagttgcaggcATTGCGCGGCATGCTTTGCTCGCAAAAATTCTCTAACGGCACATGTTCGcacgcacactggtgagaaaccattcagttgcagttatTGCACGGCAAGCTTTTCTCAGAAACAGTCCTTGACGGAACATGTtcgcacgcatactggtgagaaaccattcagttgtaGTCATTGCGCGGCATGCTTTGCTCGCAAAAATTCTCTAACGGCACATGTtcgcacgcatactggtgagaaaccacaTAGTTGCAGTTATTGCACGGCCTCGTTTGCTGAGAAAAGTAATTTGAGAATTCACATCCggacgcatactggtgagaaaccattcagttgcggTCATTGCTCGACCTCATTTGTTAAGAAAAGTCATTTGACAACACACATGCGAACGCATACTgttgagaaaccattcagttgcagtcattgcgcAGCATGCTTTGCTCTCAAAAGTTCTTTAACGGCACATGTtcgcacgcatactggtgagaaaccattcagttgcagtcattgttCCTCCCAATTCAGTGAAGAAGGTAACTTGAAGAGACACATGCGGACGCACTAtggcgagaaaccattcagttgcagtcattgcacggcatgctttGCTCAGAAACAGACTTTAACGGAACATGTTCGGACGCATACTGGTTAG
Protein Sequence
MQAVPEASTSSESSGMSDNPSSHSVESHLQGPNNTRLASAGEIQETFLSSIFDRPSALPPKIECEDEKVDASWTNQLHTSIDIKSEPTPQTDESELRLGRGGAEHDLENDIRDFLLITARVKRENMSTPLPDECNENLLDLSLTNIEIKREPPTQTIESESKLIEHIRTHAREKTFSCNHCSASFANLKRHMRTHTGEKPYSCSYCTACYSQKINLIIHIRTHTGEKPFSCSHCTACFAQKRCLTAHVRTHTGEKPFNCSHCTASFSQKQSLTEHVRTHTGEKPFSCSHCAACFARKNSLTAHVRTHTGEKPFSCSHCTSCFARKQSLIDHVSTHTGEKQFSCSHCSSSFNTCFSRKNSLTAHIRTHTGEKPFSCSHCTAYFAHESSLTAHVRTHTGEKPYSCSYCTASFALKNSLTAHVRTHTGEKPFSCSHCTASFSQKQSLTEHVRTHTGEKPFSCRHCAACFARKNSLTAHVRTHTGEKPFSCSYCTASFSQKQSLTEHVRTHTGEKPFSCSHCAACFARKNSLTAHVRTHTGEKPHSCSYCTASFAEKSNLRIHIRTHTGEKPFSCGHCSTSFVKKSHLTTHMRTHTVEKPFSCSHCAACFALKSSLTAHVRTHTGEKPFSCSHCSSQFSEEGNLKRHMRTHYGEKPFSCSHCTACFAQKQTLTEHVRTHTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-