Btab003519.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bemisia tabaci
Gene Symbol
-
Assembly
GCA_903994105.1
Location
NW:4000013-4013012[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.012 0.55 10.4 1.2 1 21 275 295 275 296 0.95
2 18 0.001 0.046 13.8 2.0 1 23 338 361 338 361 0.94
3 18 1.9e-05 0.00086 19.2 1.1 2 23 367 389 367 389 0.96
4 18 3.7e-05 0.0017 18.4 2.0 1 23 395 418 395 418 0.94
5 18 4.8e-06 0.00022 21.1 0.6 1 23 423 445 423 445 0.98
6 18 0.00012 0.0056 16.7 2.1 1 23 451 473 451 473 0.99
7 18 0.00051 0.023 14.8 0.2 1 23 479 502 479 502 0.96
8 18 6.2e-06 0.00028 20.8 0.4 1 23 508 530 508 530 0.99
9 18 0.00016 0.0071 16.4 6.8 1 23 536 558 536 559 0.95
10 18 1.7e-06 7.6e-05 22.6 1.0 1 23 565 587 565 587 0.99
11 18 0.013 0.6 10.3 2.2 1 23 593 615 593 615 0.96
12 18 5.6e-07 2.5e-05 24.1 1.2 1 23 621 643 621 643 0.97
13 18 9.8e-05 0.0044 17.0 8.1 1 23 649 671 649 671 0.98
14 18 0.00011 0.0049 16.9 0.7 1 23 679 702 679 702 0.95
15 18 0.00017 0.0077 16.3 0.8 1 23 708 730 708 730 0.98
16 18 7.4e-06 0.00033 20.6 2.7 1 23 736 758 736 759 0.95
17 18 5.3e-06 0.00024 21.0 1.1 1 23 765 787 765 787 0.99
18 18 0.00011 0.0051 16.8 1.8 1 23 793 815 793 815 0.98

Sequence Information

Coding Sequence
ATGAACAACCTTGCCAAGTGTCCGATAATTCTTCTCGAAAGAATCAAAATCGAGCCTGAGCTAGATGGAGGGGAGGAACGGATTGTAATAAGTGATGGTGCAGCCAATTTAAAATCCACGAATCCGGTGGTCCATAGCGAGTCGAACCGGTCAGACCCGCGTGAAGAAGGTTCCAACCcaagaaatgaattttcataCCGTCCCGAATTGAACTCCAGCTCACCAAGTGTCTCCTGCTGCAAAGAAGAAAATGTTATTTTCAGTTTAGTACCTCAAgtaaaggaggaggaggataaAAATCCATGTCTGTTACTCGTTCCTCAGACTTTCTCTCGAGGAATTAAGGAGGAATTTCCTGAAGAAGAGAGGGATGAAACTAGCCCAGGAACTGAATTGGAAACTGCAGAGGACAATTACTCTGCTGCAATTAGTGAGGAATTTCCTGAAGAAGAGAGGTGTGGAATTAGCTCAGGGACTGAGTTGGAAACTGTAGAGGATGTCGAGGATGACCATCGGAATGGTCGTAGTTTTGCAGCGAACGAACTCGCCAAATCCGGAGGAAGTAAATCAGCGGAGCGTCAAAGCGATCCGGAAACAATCAGTAATGTAAAATCACGCTCCGTTCGTGTGCATTTGACGGACCTATTTTCTGATAAATTGAGGAAACTCGGCAAAGGACACGTCAATGATGGCCCATGTGTGTGTTTATATTGTAAAGGCGAATTTAGAGTTACGCCAGAATCCGAAGCAGCAACGCGCGTGGAGCCCTCCTCTAGTGTGTTTTCAAGTAGACCAAAAAGTAGGAATACTTCCGTAAAACGTTTTCAATGTGCCACGTGTTCGGATCGCTTCCGTAGAAAGACTGATTTAAGGATTCATTTCAGGAGCCAGAAGTGTGGTAAGCCATTCGAACCCCCGGAATGTACTATCTCCGCACCCAAGCGGGTCAAACTGAAATTGAAACCACTCGCTGCTCACTCGAAAGAACAGTCCTCTAGTTCAAAGGTAAAGTTTGAGTGTTCAATCTGTCATGTTACTTTTGCGTCGCATGACTCCATGATGAAGCATCTGGCGCAATCTCATAGTAATCGACAGAATGAGTGTGAGAAGTGTCACGCTAAATTTCGACAAGCTGGTAATTTGAGAAGACATCTCGCAACCGTCCACTCCGGAGAACGGCCATTCAGTTGTGATGTGTGCCCCAAGACGTTCAAAGAGAAATACCAACTGAAGAGTCACAAACTATTATTTCACACCGGCGAGATATTCAGATGTAAAGTGTGCTCTAAACCATTTCGAACGCAAGTCGCTTTGGAAGCTCACTCCAAAACACATCTAAGTATTAGATCTTATCAGTGTCAGTTTTGTCCGGCTTCATTTAAGGCTAGACCTCATTTAAAAAACCATGTGCGGCGACACACTGGAGAACGACCTTATGAGTGTGATATCTGCGATGCGAAATTCATACAAGCTGCTACGCTGTATCAGCACAAGTTGTCAAGACACGATACTGAAAAAAGATACAAGTGCAAGTTGTGTCCATCCGCATTTAGTCGTTCTGACTCCTTAGGGAGCCACATGAGAATCCATTCCTCAGATAAGGCGTTCCATTGCAATTTATGCGATGCCTCGTTTCGATACAACTCGAGCCTCCATTCCCATATGAAGGTCCACCACACTGATGAACGTCCTTTCAAGTGTGAGTTGTGTTCCTATGCGTTCAAAAGAAGACCCGAGCTTACGAAACACATGATAACACACAGCACAGAGAGGAAATACTCATGCGCTCATTGTCCTGCCAAATTCAAAACCAAATTAGCCGTAAGGCATCATTTGCTTGATCACACAAACGAAAAACCCTTCATATGTGACCAGTGCGGGAAAAACTTCAAACAGAAGTCACAACTTACAGTCCATTTGACTAGTCACTTGACTGAGAAACCTCATAAATGCAAGCACTGTCCAGCCAGCTTCAAGAGTAAGTACCATTTAAGGGGCCACATTAAGAGGCACTTCTTGCAGCACTCCAAGAAGTTCCAGTGCGACCATTGCCAGCGTGTGTTTGCATTGAAAATGTCGTTACGAACGCACATAGCCCTCGCGCATTCAGAGAAACGGAACTTCAAGTGTAAGCTCTGTCCGGCAACCTACAAATATGGATCTTCTTTGAAAATCCACCTTCGTTTACATACAGGTGAGCGACCGTATGAATGCAAGCACTGTGATGCAAGTTTTACACAACTTGAAAACCTAAAATCACATGTTGCGTCGCACCATTCAACTGAGAGACCATACGAGTGTGCCCATTGTTCagcaacattttcaagaaagcCCCTATTAAAGACTCATATTCGAGTGCATAGTGGTGGCTCCAAGTTTAAATGTCCCAAGTGCCTGGCTTCATTTCGGAGTAACCATGCATTGAAGCTACATTTAAATCTTCATAAAAAGTGA
Protein Sequence
MNNLAKCPIILLERIKIEPELDGGEERIVISDGAANLKSTNPVVHSESNRSDPREEGSNPRNEFSYRPELNSSSPSVSCCKEENVIFSLVPQVKEEEDKNPCLLLVPQTFSRGIKEEFPEEERDETSPGTELETAEDNYSAAISEEFPEEERCGISSGTELETVEDVEDDHRNGRSFAANELAKSGGSKSAERQSDPETISNVKSRSVRVHLTDLFSDKLRKLGKGHVNDGPCVCLYCKGEFRVTPESEAATRVEPSSSVFSSRPKSRNTSVKRFQCATCSDRFRRKTDLRIHFRSQKCGKPFEPPECTISAPKRVKLKLKPLAAHSKEQSSSSKVKFECSICHVTFASHDSMMKHLAQSHSNRQNECEKCHAKFRQAGNLRRHLATVHSGERPFSCDVCPKTFKEKYQLKSHKLLFHTGEIFRCKVCSKPFRTQVALEAHSKTHLSIRSYQCQFCPASFKARPHLKNHVRRHTGERPYECDICDAKFIQAATLYQHKLSRHDTEKRYKCKLCPSAFSRSDSLGSHMRIHSSDKAFHCNLCDASFRYNSSLHSHMKVHHTDERPFKCELCSYAFKRRPELTKHMITHSTERKYSCAHCPAKFKTKLAVRHHLLDHTNEKPFICDQCGKNFKQKSQLTVHLTSHLTEKPHKCKHCPASFKSKYHLRGHIKRHFLQHSKKFQCDHCQRVFALKMSLRTHIALAHSEKRNFKCKLCPATYKYGSSLKIHLRLHTGERPYECKHCDASFTQLENLKSHVASHHSTERPYECAHCSATFSRKPLLKTHIRVHSGGSKFKCPKCLASFRSNHALKLHLNLHKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-