Btab002774.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bemisia tabaci
Gene Symbol
-
Assembly
GCA_903994105.1
Location
NW:4037710-4062284[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1.5e-05 0.00067 19.6 0.5 1 23 253 275 253 275 0.98
2 17 4.6e-05 0.0021 18.0 0.5 1 23 309 331 309 331 0.98
3 17 0.0053 0.24 11.6 0.0 1 23 335 357 335 357 0.98
4 17 0.00012 0.0055 16.7 0.5 1 23 387 409 387 409 0.98
5 17 0.00022 0.0098 15.9 4.2 1 23 415 437 415 437 0.98
6 17 0.0002 0.0088 16.1 0.0 1 23 443 465 443 465 0.98
7 17 0.016 0.71 10.1 4.1 1 23 471 493 471 493 0.97
8 17 2.8e-05 0.0012 18.7 0.8 1 23 499 522 499 522 0.95
9 17 3e-05 0.0013 18.7 1.6 1 23 527 549 527 549 0.97
10 17 3.6e-05 0.0016 18.4 1.2 1 23 555 577 555 577 0.99
11 17 1.6e-07 7.2e-06 25.8 1.7 1 23 583 605 583 605 0.99
12 17 1.3e-05 0.00058 19.8 0.7 1 23 611 633 611 633 0.98
13 17 0.00019 0.0085 16.1 1.5 1 23 640 662 640 662 0.98
14 17 0.00015 0.0067 16.4 0.1 1 23 668 690 668 690 0.98
15 17 4.2e-06 0.00019 21.3 0.4 1 23 696 718 696 718 0.98
16 17 0.0001 0.0046 17.0 1.2 1 23 725 747 725 747 0.98
17 17 0.00014 0.0062 16.6 1.3 1 21 753 773 753 774 0.95

Sequence Information

Coding Sequence
ATGAAATCCGACTTTCTTCTCGTACCTCTGATACATCACTCAATTCCTGGCCGGTTTGAATTTCTCTCATTTCATGCAGTCTCTGGGATGATTTCGCGCAGTAAGACTCCAAAGGTTTGTGATACAGTTCTTGTAAAGCAAGAACTCAGTACTTCAGATACTTCGAAAGATGCATCTGACGATGAATCTAGTAATCTTACATCCGAATTGATTAAAGAAGAACCCGTATCCCCTTCGAGAGACAATTGTGCCTCTCCAGTTCAACCTTCAACTAATTTTGTCGGCACCTCCGTGGGTATGATCACCAAAATTAAAACCGAAACCCAcaatgacgatgatgatgatgatgacatGTTGCCTCCCAGCGTGGAAATTAAAATCGAGCCCGATCTATCGTTTAGTAATGACCGTCTTGAAGTTGAGGCTTGGGGACAGACTGTGGAAGATACTACAATGTATGCAACGAATTTGTCCACAATTTCTGTACCCGAAATCGTAGGAAATCCTGATAACCCGACTCATAGAATTACACGCACATcaggaaaagaaataaaagacaGCGCAGATTCACTAACCTCTGAAGTGGATTTTGGAAATGAATCTGAGATACTCGAAATGGTCGAGGATGATAATGAGGATAACGTAGCAGTCCATAGTGGTATTAAAGAAGAATACAGCTGTGGGCAGTACTCAGAATCATTGGTCCATGAAAACAATCAAGATGTAGCCATGTTTTTGCACGACGCCGATAAATTCTTTAGGTGCAGCAAATGCGCCTATGTATTTACCCAAGAGGAAGCCTTAGAGACCCATATGATGAAGCATACTGGAGAGAAGCGAGTGAAACCTATTGATTATCCCTCCGATTTGGTCAAAAAAGAATTTGTAACACGTCATGTGCGTTCACGCACGGAAGGGGTACCGTTCAAATGTAGCTATTGCTTTTTGACATTCGCAACAAAAGTAGCATTATCGGCTCACGAACGTGTACATGGGGCACCGTTCAAATGCAGCCTTTGCATTTTGGCATTCGCAACAAAAGCAGCATTATCGGCTCATGAACGTGTACATACGAGAAAACCTATTGATTATCCCTCCGATTTGGTCAAAGAAGAATTTGTAACACGTCATGTGCGTTTACACATGGAAGGGGTACCGTTCAAATGTAGCTATTGCTTTTCGACATTCGCAACAAAAGCAGCATTATCGGCTCATGAACGTGTACACACGAGAGAGAAACCGTTCAAATGCAGCCATTGCTCCATCGCATTTACCCAAAAACGAGCCTTATTACGTCACTATTTCCGTCATACCGGCACCAAACCATTCAAATGCGACCAATGTCCTGCTGAATTCGCCGGGAAGGCCGGCTTAACCCGTCATATTGTTACCCACTCGGGTGAGAAACCTTTCCATTGCAGTCAGTGCCCCGCCGCATTCGACTTCAGCTTCAAACTAAAAAGACATCATCTGGTGCATTCTCGCGACAAACTCTACACCTGCGCCCACTGCTCCGTCACGTTTGCCTCGAAATCCACGCTCAAGCAGCACATCTTAGCAGTGCATTTTTCTAAACGATACAATTGTACATTTTGCCCCCGATCATTTTCCAAAGAAAGCTACTTACAGACGCATACTCTCATACACACAATTGGCAAACCGTTTAAGTGCCGTCATTGCCCTGCTGCATTCCCTCTAAATCAAAGCTTGACACGTCACATGTTAACACATTCCGGCGAGAGACCGTACAAATGCAGTCAGTGCCCCGCCACATTTATCACCCAACAcaatttaaaagctcatattcGCACGCACTCCCCAGAAAAACCGTTTAGTTGTACTCTCTGCTTGGCCTCCTTTGCTCATAAATCAGCCTTGGAGCGGCATATGATGGTCCATAGTGGTTGTGAGAAACCGTTCATTTGTAGCTACTGTTCTGCCACATTTTTTGTTGAAAGCCATTTAAATAGTCATATTCTTACACATACTAGTGATAAACCGTTTAGTTGTTACCAGTGCGAAGCGTCATTTGCCGATGAAAGCGCTTTGAATCAACATATTTTAGTCCACCTAGGTGATAAGCAATATAAGTGTAAGCAATGCTCTGCTTCATTTGCGGAATCAAGTAATTTGGAGCGCCACGTACGGGCTCACACTAGTAGTAAGGAAATGTTTACTTGTACACATTGCTCTGCCTCGTTTGCGGTTGAGAGAACTTTAAAAAGACATATTTTGGTGCATACAGGTGAGAAACCGTTTAAGTGCAATCATTGCCCTGCCTCATTTACCgaagaaataaatttaatacGTCATATTTGCAAAGAGAAAGGTTAG
Protein Sequence
MKSDFLLVPLIHHSIPGRFEFLSFHAVSGMISRSKTPKVCDTVLVKQELSTSDTSKDASDDESSNLTSELIKEEPVSPSRDNCASPVQPSTNFVGTSVGMITKIKTETHNDDDDDDDMLPPSVEIKIEPDLSFSNDRLEVEAWGQTVEDTTMYATNLSTISVPEIVGNPDNPTHRITRTSGKEIKDSADSLTSEVDFGNESEILEMVEDDNEDNVAVHSGIKEEYSCGQYSESLVHENNQDVAMFLHDADKFFRCSKCAYVFTQEEALETHMMKHTGEKRVKPIDYPSDLVKKEFVTRHVRSRTEGVPFKCSYCFLTFATKVALSAHERVHGAPFKCSLCILAFATKAALSAHERVHTRKPIDYPSDLVKEEFVTRHVRLHMEGVPFKCSYCFSTFATKAALSAHERVHTREKPFKCSHCSIAFTQKRALLRHYFRHTGTKPFKCDQCPAEFAGKAGLTRHIVTHSGEKPFHCSQCPAAFDFSFKLKRHHLVHSRDKLYTCAHCSVTFASKSTLKQHILAVHFSKRYNCTFCPRSFSKESYLQTHTLIHTIGKPFKCRHCPAAFPLNQSLTRHMLTHSGERPYKCSQCPATFITQHNLKAHIRTHSPEKPFSCTLCLASFAHKSALERHMMVHSGCEKPFICSYCSATFFVESHLNSHILTHTSDKPFSCYQCEASFADESALNQHILVHLGDKQYKCKQCSASFAESSNLERHVRAHTSSKEMFTCTHCSASFAVERTLKRHILVHTGEKPFKCNHCPASFTEEINLIRHICKEKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-