Btab008147.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:351030-358754[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.2e-05 0.00054 19.9 0.3 1 23 279 301 279 301 0.97 2 21 1.2e-05 0.00054 19.9 1.5 1 23 307 329 307 329 0.98 3 21 0.0011 0.048 13.8 1.6 1 23 335 357 335 357 0.98 4 21 3.4e-05 0.0015 18.5 0.5 1 23 363 385 363 385 0.98 5 21 0.0041 0.18 11.9 1.8 1 23 391 413 391 413 0.97 6 21 0.00025 0.011 15.7 0.2 1 22 419 440 419 440 0.95 7 21 0.00015 0.0069 16.4 1.1 1 23 467 489 467 489 0.96 8 21 0.0052 0.23 11.6 0.8 1 21 500 520 500 521 0.95 9 21 0.0042 0.19 11.9 5.9 1 23 577 599 577 599 0.98 10 21 0.0012 0.053 13.6 3.5 1 23 605 627 605 627 0.96 11 21 6.2e-06 0.00028 20.8 3.4 3 23 635 655 633 655 0.97 12 21 0.00048 0.022 14.9 1.5 1 23 661 683 661 683 0.97 13 21 0.00042 0.019 15.0 1.3 1 23 689 711 689 711 0.98 14 21 1.2e-05 0.00056 19.8 0.5 1 23 717 739 717 739 0.98 15 21 0.19 8.6 6.7 2.7 1 23 745 767 745 767 0.94 16 21 0.00051 0.023 14.8 1.6 1 23 773 795 773 795 0.96 17 21 7.6e-06 0.00034 20.5 3.0 1 23 801 823 801 823 0.98 18 21 1e-05 0.00045 20.1 2.2 1 23 829 851 829 851 0.98 19 21 6.9e-05 0.0031 17.5 2.6 1 23 857 879 857 879 0.98 20 21 0.028 1.2 9.3 2.2 1 23 885 907 885 907 0.98 21 21 2.5e-05 0.0011 18.9 1.5 1 23 913 935 913 935 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAGTGCCATGATCACGAACCACTCGGGATGGAAGCAGAACCTGAGGTCATTCTCACTGAAGGTGAATTCCATGAAGACTCAACTGCAATTCCCTCTAAAAGCATTGAGATTGATCCTTTAGGAGGCTTAGATGTTCATTTCGAGGCCACTTCTGCGTTTATTCCTGATGATGGAGGCACCTCTTCACCAGAAGTACCAACCCCAGCAACATTGTCCATGGTGGAAAGTATGGAATATAAGGCCTCGACCTCAGTCCATCAGCAGAGCAATCAACAAAAGACTACTCCTGAAACAACACCGCATTCTGAACGAAGAGGACTAAACTTAAACGCTCTTGGAGAAGACAGAATCAAGTCGAATTACGGTTTCTCGGAAGAAAATGTCATGGACATGAGAGAAATCCCCGACCAAACTTCAATGGATGTAGGGGAAGAATCGCATCAGGTAACTCCTACGCTACTGAGGTTCCCATCCTCCATTTCTATTGTTCCGCCTCTAATGCTCGCTAACTCTTCTATCAAAGCAAGTCTGCAGTTAAGCTcaacaaaaagtgaaaataaatcCCCAGACAACCCCAGTAGTGAAAAACTTGATAATGTCTCTTCAGAGACAAGCCCTGCCATTGATGGAAAAGAGTTTGCCCCTGCAAATCGCCTAGATCAGTCTATATCAAAAGGCAGAGGAAAACCATTCTCCTTCAATTGCTATTTAGATCAGATTAAATCGAAAGGCAGAGGAAAACCATTCTCCTTCAATTGCTATCTAGATCAGTTCAACACATCAACCAGTGTGAAAAAACATCCAGAGGCTCCATCAAATGAGAGGCCCTTCGCTTGTTCATTGTGCCCAGCACAGTTCAAAGACAACAGTGGTTTGAATCGCCATTTAAAAACCCACTCTGGTGAAAAATCATTTCCGTGTGTGCATTGTCCGGAAAAGTTCAACAATAAAAATGACCTTAACAATCATTTACAAACACACGTGAAAGAACGGCCTTATTCCTGCAAAGTCTGTCCCGCTCGATACCAGAAGCAAAGCCATCTTGATATCCATTTGCGTAACCACTCGGATGACCAACCATATCCCTGTGATCAGTGCCCTGCACGCTTCAAAGTTAAAAACAGCCTCACGCAGCATTTGCGATCTCATTCCAACGAGAGGCCTTTTGCTTGTGCTCAGTGTCCAGCTCGATACAAAGATAAATGTGGTCTTAGAAGGCATTCACGAAGTCATTTGGGTGAAAAATCCTTCTCTTGTGAAAACTGTCCAGCCCAGTTTAAGAATGAGGGTTATCTTAAGCGACATATAAAGATGAAGGTATGTTCTCAGCTAGAGTTTAATGATAGGATGAGCGTCAAAGAGCATACCCAAACTCATGCTAGTGAGCTATTATACCGTTGTCCAGACTGCACTATGAAATTTGATAATAAGGAGAGTCTAAGGTTACATTTTGAAAACCACTTGCGAAGTCCTGATCCTGATGAAAGATCCTACGTTTGTGACCACTGTAAAGCTCAATTCCAAGATAAAAAGAGTGTCAGGCGACATCTCCAAGTATGCGATGGCGTGAATAAAGAAACATCATCAGATCTAAAGGAGATCCTTCTCACTGGCACCGAAGACAAAGCCTCTATTTACCAGCAATTTTTGACGAACTTATACAATAAGGAAGAGTTAGAGAAACGTTTATTCGCTAATCCTgatgaaaaactggaaaaaaactatgtctGTGAACATTGTTCTGCACAATTTAAGCACAGGTTTTCCTTCACTCAACACTTAAAAGTCCACTCAGATGAGCGACCGCACGCTTGTAATCAGTGCCCGAGTACATTTAAGGACAAACAGAGTCTCAAGGAGCACTTTAAAACTCATTCTACGGAGAGACCATGGTTTTGTACCCTATGTGGTGCTAGTTTTAAGGATAAGAAGTGTCTCAAGCGACATATAAGAACTCATTCTGATGAGAGACCATTCATTTGCCAACTTTGTTTATCTGGATTCAAAACAAGAGGCGACCTGAAGAAACACTATAGGACTCACTCCGGGGAAAGACCTTACTCATGTGATATTTGCCAAGCTCAGTTTAAGAAAGGAAGTTCCCTCAAGAAACATCGGTTATCACATTCCGATGAGAGACCGTTTTCTTGCGAACTTTGCCCAGCGACTTTCAAAGATAAAGGTGGTCTCAAGCAACATTATCGATCCCACTCAACTGAAAGAGCTTTCTGTTGCCAACTCTGTCCAGCAGAGTTTAAGGATAGGCAGACTCTTGCGTATCATTTCTTTAGTCACACCAGTGAGAGACCGTTTGCCTGCGAGCTCTGTGATGCTCGCTTTAAAGACCGAAAATGCCTCAAGCGGCATGAAATAATTCACTCTGCCGAAAGACCTTATTCCTGCGAGCATTGCTCTGCAAGTTTTAGACGGAAAAGTTATCTCACTGAGCATTTAAAAATTCACTCAGACGCTACTCCGTTCTCCTGTGACCAGTGTAATGCCcagtttaaagaaaaatcgtaTCTAACGAGGCATTTACGAACTCACTCTGAGGACAGACCTTTCCCGTGTGAAAAATGTCAATCACAGTTTAAAGACAGGAAAAGTCTCAACCGCCACTTAAAAACCCATGTTGATGTCAGAGCTTTTGTGTGTGAGCAGTGTCctgcaacatttaaatgtaaaaaaagctTAAAAGGACATACTATCACGCACACGGAGGTAAAGTCTTTTGCCTGTGAACTTTGTTCTACTCAATTTAAATACAAGAAAGGTCTCGTGCGGCACATGCGCACACATTTCGATGGCCGgccttttttccttgaatcattGTTGTGCACTATGCCTGCCAGTTCCTCTGAGAGTCGTGAAAACGAAGAGATGAATGAAGCTGTTCAACACATGAATGAAGTCGCTCAAGACATGAATGAAGCCGTTCAACACAGGAATGAAGCCGTTCAACACACGAATGAAGCCGTTCAACACACGAATGAAGTCGTTCAACACACAAATGAAGCCGTTCAACACATGAACGAAGCCATTCAACATATGAATGAGGAGGTCAAGGTCTAA
- Protein Sequence
- MEECHDHEPLGMEAEPEVILTEGEFHEDSTAIPSKSIEIDPLGGLDVHFEATSAFIPDDGGTSSPEVPTPATLSMVESMEYKASTSVHQQSNQQKTTPETTPHSERRGLNLNALGEDRIKSNYGFSEENVMDMREIPDQTSMDVGEESHQVTPTLLRFPSSISIVPPLMLANSSIKASLQLSSTKSENKSPDNPSSEKLDNVSSETSPAIDGKEFAPANRLDQSISKGRGKPFSFNCYLDQIKSKGRGKPFSFNCYLDQFNTSTSVKKHPEAPSNERPFACSLCPAQFKDNSGLNRHLKTHSGEKSFPCVHCPEKFNNKNDLNNHLQTHVKERPYSCKVCPARYQKQSHLDIHLRNHSDDQPYPCDQCPARFKVKNSLTQHLRSHSNERPFACAQCPARYKDKCGLRRHSRSHLGEKSFSCENCPAQFKNEGYLKRHIKMKVCSQLEFNDRMSVKEHTQTHASELLYRCPDCTMKFDNKESLRLHFENHLRSPDPDERSYVCDHCKAQFQDKKSVRRHLQVCDGVNKETSSDLKEILLTGTEDKASIYQQFLTNLYNKEELEKRLFANPDEKLEKNYVCEHCSAQFKHRFSFTQHLKVHSDERPHACNQCPSTFKDKQSLKEHFKTHSTERPWFCTLCGASFKDKKCLKRHIRTHSDERPFICQLCLSGFKTRGDLKKHYRTHSGERPYSCDICQAQFKKGSSLKKHRLSHSDERPFSCELCPATFKDKGGLKQHYRSHSTERAFCCQLCPAEFKDRQTLAYHFFSHTSERPFACELCDARFKDRKCLKRHEIIHSAERPYSCEHCSASFRRKSYLTEHLKIHSDATPFSCDQCNAQFKEKSYLTRHLRTHSEDRPFPCEKCQSQFKDRKSLNRHLKTHVDVRAFVCEQCPATFKCKKSLKGHTITHTEVKSFACELCSTQFKYKKGLVRHMRTHFDGRPFFLESLLCTMPASSSESRENEEMNEAVQHMNEVAQDMNEAVQHRNEAVQHTNEAVQHTNEVVQHTNEAVQHMNEAIQHMNEEVKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -