Basic Information

Insect: Bemisia tabaci
Gene Symbol: -
Assembly: GCA_903994105.1
Location: NW:1096-10641[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 9.4 4.2e+02 1.3 0.0 13 23 207 217 205 217 0.87

2 25 0.0012 0.055 13.6 0.2 1 23 223 245 223 245 0.98

3 25 0.046 2.1 8.6 1.4 5 23 255 273 254 273 0.88

4 25 0.00016 0.0074 16.3 1.0 2 23 281 302 280 302 0.94

5 25 0.0004 0.018 15.1 8.5 1 23 308 330 308 330 0.98

6 25 0.00016 0.0071 16.4 8.1 1 23 336 358 336 358 0.98

7 25 2.7e-06 0.00012 21.9 8.6 1 23 364 386 364 386 0.98

8 25 0.00048 0.022 14.8 4.9 1 23 392 414 392 414 0.98

9 25 0.00044 0.02 15.0 8.6 1 23 420 442 420 442 0.98

10 25 0.00044 0.02 15.0 8.6 1 23 448 470 448 470 0.98

11 25 3.6e-06 0.00016 21.5 4.5 1 23 476 498 476 498 0.98

12 25 0.0079 0.35 11.0 6.8 1 23 504 526 504 526 0.98

13 25 0.00044 0.02 15.0 8.6 1 23 532 554 532 554 0.98

14 25 9.1e-05 0.0041 17.1 3.8 1 23 560 582 560 582 0.98

15 25 1.1e-05 0.0005 20.0 8.0 1 23 605 627 605 627 0.98

16 25 6.2e-05 0.0028 17.7 5.4 1 23 633 655 633 655 0.98

17 25 0.00075 0.034 14.2 8.8 1 23 669 691 669 691 0.98

18 25 1.5e-05 0.00067 19.6 6.2 1 23 697 719 697 719 0.98

19 25 0.0012 0.054 13.6 7.3 1 23 725 747 725 747 0.97

20 25 0.00018 0.008 16.2 4.7 1 23 753 775 753 775 0.99

21 25 0.00047 0.021 14.9 8.0 1 23 781 803 781 803 0.98

22 25 6.8e-05 0.003 17.5 5.3 1 23 809 831 809 831 0.98

23 25 0.012 0.54 10.5 6.9 1 23 837 859 837 859 0.98

24 25 0.00083 0.037 14.1 9.1 1 23 865 887 865 887 0.98

25 25 0.015 0.65 10.2 5.7 1 19 893 911 893 912 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	9.4	4.2e+02	1.3	0.0	13	23	207	217	205	217	0.87
2	25	0.0012	0.055	13.6	0.2	1	23	223	245	223	245	0.98
3	25	0.046	2.1	8.6	1.4	5	23	255	273	254	273	0.88
4	25	0.00016	0.0074	16.3	1.0	2	23	281	302	280	302	0.94
5	25	0.0004	0.018	15.1	8.5	1	23	308	330	308	330	0.98
6	25	0.00016	0.0071	16.4	8.1	1	23	336	358	336	358	0.98
7	25	2.7e-06	0.00012	21.9	8.6	1	23	364	386	364	386	0.98
8	25	0.00048	0.022	14.8	4.9	1	23	392	414	392	414	0.98
9	25	0.00044	0.02	15.0	8.6	1	23	420	442	420	442	0.98
10	25	0.00044	0.02	15.0	8.6	1	23	448	470	448	470	0.98
11	25	3.6e-06	0.00016	21.5	4.5	1	23	476	498	476	498	0.98
12	25	0.0079	0.35	11.0	6.8	1	23	504	526	504	526	0.98
13	25	0.00044	0.02	15.0	8.6	1	23	532	554	532	554	0.98
14	25	9.1e-05	0.0041	17.1	3.8	1	23	560	582	560	582	0.98
15	25	1.1e-05	0.0005	20.0	8.0	1	23	605	627	605	627	0.98
16	25	6.2e-05	0.0028	17.7	5.4	1	23	633	655	633	655	0.98
17	25	0.00075	0.034	14.2	8.8	1	23	669	691	669	691	0.98
18	25	1.5e-05	0.00067	19.6	6.2	1	23	697	719	697	719	0.98
19	25	0.0012	0.054	13.6	7.3	1	23	725	747	725	747	0.97
20	25	0.00018	0.008	16.2	4.7	1	23	753	775	753	775	0.99
21	25	0.00047	0.021	14.9	8.0	1	23	781	803	781	803	0.98
22	25	6.8e-05	0.003	17.5	5.3	1	23	809	831	809	831	0.98
23	25	0.012	0.54	10.5	6.9	1	23	837	859	837	859	0.98
24	25	0.00083	0.037	14.1	9.1	1	23	865	887	865	887	0.98
25	25	0.015	0.65	10.2	5.7	1	19	893	911	893	912	0.96

Sequence Information

Coding Sequence: ATGCCGAAGCTAAAAATCCAACTGGAAGAGCACTCTGCACTCAGCACACCCGAGGACTACAATCCAGTGATTCCACCAAACGATAAAAGTGCGAAGGACCCCGTGGGAGACGTCTCGAGGATTGATTGCACGAGCCCTTCAATGCAGGCCCCACCTGAAGCGTGCACCAGCTGGGAGTCGAGCGTTATGCCTGGCAACCCATCTCCCCCGTCCGGAGGAAGTCACCCTCAAGATTCCAACAATACCCGACTTGCATCAGTAGAAGAGACCGAAGACACCTCGCCCTCGTCCATCTTGGATTCGCCCTCCGCTCATCCCCCCAAAATTGAATGCGAGGATGAAAAAGATTATGCAAGTTGGACCAACCAGCTGCACACGAGCATTGAAATTAAGAGTGAACCCACTCCCCAGACGGATGAGTCAGAACTCAGGTTGGGACGAGGAGGAGGAGAACACGATTTGGAGAATGATATTCGTGATTTTGTCCCGACGACAGCGCGAGTGAAAAGGGAGGACATGAGCTCTCCACTTCCCGACCATTCTCATGAAAGTTGGATTGACCTGTCAGATACGAATATCGAAATCAAGAGTGAACCCCCTACCCAAACAAACGCGTCGGAATCCGAGTTCGTCGAACATATTCGAACGCACGCTAGTGAGAACCCATTCACTTGCGGCGAGTGTTTGAgccttttttcttctgaaagcgcTTTAATTACACATATGCAAACGCACGATGGCGAGATACCATTCAATTAcagtcattgctcctcctcATCCAGTATTGAAGATAATTTAAAGAAACACATGCGAACGCATACTCGTAATGAGAAGCTACTTAGTTGCAATCCttgctcctcctctttcagTAGTAAAGACGATTTAAAGAtgcacatgcgaacgcacactggtgagaagccattcagttgcagtcattgcacggcatgcttttctcacaaaaagtctTTAACGGCACATGTTCGCaagcatactggtgagaaaccattcagttgcagtcattgcacagcatgcttttctcacaaaaagtctTTAACGGCACATGTTCGCacacatactggtgagaaaccattcagttgcaatcATTGCTCCTCTTCTTTCAGTAGAAAACACAATTTAAAGAGgcacatgcgaacgcacactggtgagaaaccattcagttgcagtcattgctcctcctctttcagtattaaaaactatttaaagatgcacatgcgaacgcacactggtgagaaaccattcagttgcagtcattgcacagcatgcttttctcacaaaaagtctttaacggaacatgttcgcacgcatactggtgagaaaccattcagttgcagtcattgcacagcatgcttttctcacaaaaagtctttaacggaacatgttcgcacgcatactggtgagaaaccatttagTTGCAATCATTGCTCCTCTTCTTTCAGTAGTAAAGACTATTTAAAGGtgcacatgcgaacgcacactggtgagaaaccattcagttgcagtcattgctcctcctctttccttaggaaaattcatttaaagatgcacatgcgaacgcatactggtgagaaaccattcagttgcagtcattgcacagcatgcttttctcacaaaaagtctttaacggaacatgttcgcacgcatactggtgagaaaccattcagttgcaatcattgctcctcctctttcagtattaaaatcaatttaaagatgcatatgcgaacgcacactggtgagaaaccattcagttgcagtttaacggaacatgttcgcacacatactggtgagaaaccattcagttgcaatcATTGCTCCTCTTCTTTCAGCAGAAAACACAATTTAAAGAtgcacatgcgaacgcacactggtgagaaaccattcagttgcagtcattgctcctcctctttcagtattaaaaagaatttaaagacgcacatgcgaacgcacactggtgagaaagttcgcacgcatactggtgagaaaccattcagttgcagtcattgcagagcatgcttttctcacaaaaagtctttaacggaacatgttcgcacgcatactggtgagaaaccatttagttgcaatcattgctcctcctctttcagTAGTAAAAAGAGTTTAAAGAAGCACATGCAAACGCACACtagtgagaaaccattcagttgcagtcattgcacggcatgcttttctcacaaaaagtctttaacggaacatgttcgcgcgcatactggtgagaaaccattcaggtGCAATCATTGCTCCTCTTCTTTCAGTAGTAAAGACTTTATTAAGGtgcacatgcgaacgcacactggtgagaaaccattcagttgcagtcattgcacagcatgcttttctcacaaaaattctttaacggaacatgttcgcacgcatactggtgagaaaccattcagttgcaatcattgctcctcctctttcagtattaaaaacagtttaaagaagcacatgcgaacgcacactggtgagaaaccattcagttgcagtcattgcatgGCATGCTTTGCTCAAAAACATACTTTAACGGAACATGTTCGCACGCACACTGGTgcgaaaccattcagttgcagtcattgcacttcatgcttttctcacaaaaagtctTTAACGGCACATGTTCGCacacatactggtgagaaaccattcagttgcagtcattgcacggcatgcttttctcacaaaaagtctttaacggaacatgtttga
Protein Sequence: MPKLKIQLEEHSALSTPEDYNPVIPPNDKSAKDPVGDVSRIDCTSPSMQAPPEACTSWESSVMPGNPSPPSGGSHPQDSNNTRLASVEETEDTSPSSILDSPSAHPPKIECEDEKDYASWTNQLHTSIEIKSEPTPQTDESELRLGRGGGEHDLENDIRDFVPTTARVKREDMSSPLPDHSHESWIDLSDTNIEIKSEPPTQTNASESEFVEHIRTHASENPFTCGECLSLFSSESALITHMQTHDGEIPFNYSHCSSSSSIEDNLKKHMRTHTRNEKLLSCNPCSSSFSSKDDLKMHMRTHTGEKPFSCSHCTACFSHKKSLTAHVRKHTGEKPFSCSHCTACFSHKKSLTAHVRTHTGEKPFSCNHCSSSFSRKHNLKRHMRTHTGEKPFSCSHCSSSFSIKNYLKMHMRTHTGEKPFSCSHCTACFSHKKSLTEHVRTHTGEKPFSCSHCTACFSHKKSLTEHVRTHTGEKPFSCNHCSSSFSSKDYLKVHMRTHTGEKPFSCSHCSSSFLRKIHLKMHMRTHTGEKPFSCSHCTACFSHKKSLTEHVRTHTGEKPFSCNHCSSSFSIKINLKMHMRTHTGEKPFSCSLTEHVRTHTGEKPFSCNHCSSSFSRKHNLKMHMRTHTGEKPFSCSHCSSSFSIKKNLKTHMRTHTGEKVRTHTGEKPFSCSHCRACFSHKKSLTEHVRTHTGEKPFSCNHCSSSFSSKKSLKKHMQTHTSEKPFSCSHCTACFSHKKSLTEHVRAHTGEKPFRCNHCSSSFSSKDFIKVHMRTHTGEKPFSCSHCTACFSHKNSLTEHVRTHTGEKPFSCNHCSSSFSIKNSLKKHMRTHTGEKPFSCSHCMACFAQKHTLTEHVRTHTGAKPFSCSHCTSCFSHKKSLTAHVRTHTGEKPFSCSHCTACFSHKKSLTEHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -