Btab011923.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:7-1850[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0044 0.2 11.8 0.0 3 21 88 106 86 107 0.94 2 18 0.0079 0.35 11.0 2.9 1 22 114 135 114 135 0.96 3 18 7.8e-06 0.00035 20.5 3.0 1 23 142 164 142 164 0.98 4 18 8.1e-06 0.00036 20.4 2.9 1 23 170 192 170 192 0.98 5 18 1.2e-06 5.2e-05 23.1 4.5 1 23 198 220 198 220 0.98 6 18 3.7e-05 0.0016 18.4 4.2 3 23 228 248 226 248 0.98 7 18 3.1e-06 0.00014 21.7 4.9 1 23 254 276 254 276 0.98 8 18 7.7e-07 3.4e-05 23.6 1.7 1 23 282 304 282 304 0.98 9 18 3.1e-06 0.00014 21.7 4.9 1 23 310 332 310 332 0.98 10 18 7.7e-07 3.4e-05 23.6 1.7 1 23 338 360 338 360 0.98 11 18 7.8e-06 0.00035 20.5 3.0 1 23 366 388 366 388 0.98 12 18 0.0002 0.0088 16.1 6.1 1 23 394 416 394 416 0.98 13 18 1.2e-06 5.2e-05 23.1 4.5 1 23 422 444 422 444 0.98 14 18 0.00035 0.016 15.3 8.7 1 23 450 472 450 472 0.98 15 18 3.1e-05 0.0014 18.6 2.4 1 23 478 500 478 500 0.98 16 18 7.3e-07 3.3e-05 23.7 2.8 1 23 506 528 506 528 0.98 17 18 0.00078 0.035 14.2 6.2 1 23 534 556 534 556 0.98 18 18 2.8e-05 0.0012 18.7 3.1 1 23 562 584 562 584 0.98
Sequence Information
- Coding Sequence
- ATGGGTAAGTCTGAAGTTAGGTTGTGTAATGAAGGCGGAGAGCTCGATTCGGAGGTTAATTTTTGTGCTTTCGTCCCGAAGATAACGTCAGTGAAAAGAGAGAGCATCGGCACTACCCATCTCGGACAGGCCGAAGAGAACGTAGGCAAGAGAACGAGAACCCTTGCAAACGATGAAAAAAGGAACGCTCGACACATACATGTAAATATGCGTACAGTATCCATGAgagattcgaaaaaaatgaatgccaAACCATCCATATGCAATGTTTGCGCTGCATCTTTTACTACGAAAACCTCAATGGCGAGACATATTCAAATAAATACCGGCGAGAAACCATTCaattgcagtcattgctcctcctcttCCAGTAGTAAATACAATATAAAGAAACACATGCAAACGCGCACTGGCGAGAAATCATTCAattgcagtcattgctcggcCTCTTTTGCTATGAAATATAACTTGACAACACACATCCGGACGCATACTGGAGAGAAgccattcagttgcagttatTGCACGGCATGCTTTGCTCGCAAACAGTCTCTAACGGCACATGTTCGcacgcacactggtgagaaaccattcagttgcagtcattgctcctcctctttcactagtaaagataatttaaaggaacacatgcgaacgcacactgCCGAGAAACCATTcggttgcagtcattgcacggtATGCTTTGCTCAAAAGTCTGCTTTAACGAAACATGTtcgaacgcatactggtgagaaaccattcaattgcagccattgctcctcctctttcagTACGAAACAAAATCTCAAGGTACAtatgcgaacgcacactggcgagaaaccattcagttgcagtcattgctcggcCTCTTTTGCTATGAAAAGTAACTTGACAGCACACATCcgaacgcatactggcgagaaaccattcaattgcagccattgctcctcctctttcagTACGAAACAAAATCTCAAGGTACAtatgcgaacgcacactggcgagaaaccattcagttgcagtcattgctcggcCTCTTTTGCTATGAAAAGTAACTTGACAGCACACATCcgaacgcatactggcgagaaaccattcaattgcagtcattgctcggcCTCTTTTGCTATGAAATATAACTTGACAACACACATCCGAACtcatactggcgagaaaccattcagttgcagtcattgcacggcatgctttGCTCAGAAAGGGTGTTTAACGGCTCATGTTCGcacgcacactggtgagaaaccattcagttgcagtcattgctcctcctctttcactagtaaagacaatttaaaggaacacatgcgaacgcacactggcgagaaaccattcagttgcagtcattgcacggcatgctttGCTCACAAATGTAATTTGATAATTCACATCCGGACGCATACTggagagaaaccattcagttgcagtcagtGCACGGCATGCTTTGCTCAGAAACGGCTTTTAACGGCACATGTTCGcacgcacactggtgagaaaccattcagttgcagtcattgcacggccTCTTTTGCTGAGAAAAGTAATTTGACAAAACACATCCGGACGCATACTggagagaaaccattcagttgcagtcattgcacggcatgctttGCTCACAAACAGTCTCTAACGGCACATGTCTccacgcatactggtgagaaactaTTCAGTTGTAGTCATTGTTCGGCGTCCTTCCGCGAGAATGTCACTTTAAAGAGACATTTGCGAATGCATACTGACGGAAAACTATAG
- Protein Sequence
- MGKSEVRLCNEGGELDSEVNFCAFVPKITSVKRESIGTTHLGQAEENVGKRTRTLANDEKRNARHIHVNMRTVSMRDSKKMNAKPSICNVCAASFTTKTSMARHIQINTGEKPFNCSHCSSSSSSKYNIKKHMQTRTGEKSFNCSHCSASFAMKYNLTTHIRTHTGEKPFSCSYCTACFARKQSLTAHVRTHTGEKPFSCSHCSSSFTSKDNLKEHMRTHTAEKPFGCSHCTVCFAQKSALTKHVRTHTGEKPFNCSHCSSSFSTKQNLKVHMRTHTGEKPFSCSHCSASFAMKSNLTAHIRTHTGEKPFNCSHCSSSFSTKQNLKVHMRTHTGEKPFSCSHCSASFAMKSNLTAHIRTHTGEKPFNCSHCSASFAMKYNLTTHIRTHTGEKPFSCSHCTACFAQKGCLTAHVRTHTGEKPFSCSHCSSSFTSKDNLKEHMRTHTGEKPFSCSHCTACFAHKCNLIIHIRTHTGEKPFSCSQCTACFAQKRLLTAHVRTHTGEKPFSCSHCTASFAEKSNLTKHIRTHTGEKPFSCSHCTACFAHKQSLTAHVSTHTGEKLFSCSHCSASFRENVTLKRHLRMHTDGKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -