Btab013391.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:1319111-1335773[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.2e-05 0.00055 19.9 0.8 1 23 386 408 386 408 0.97 2 18 0.00048 0.021 14.9 0.0 1 23 414 436 414 436 0.97 3 18 0.00031 0.014 15.5 1.1 1 23 442 464 442 464 0.98 4 18 4.8e-05 0.0022 18.0 4.7 1 21 470 490 470 492 0.95 5 18 4.9e-06 0.00022 21.1 4.2 1 23 498 521 498 521 0.98 6 18 4.7e-05 0.0021 18.0 5.3 1 23 527 549 527 549 0.97 7 18 9.5e-06 0.00043 20.2 8.3 1 23 555 577 555 577 0.97 8 18 1.1e-07 4.9e-06 26.3 2.7 1 23 583 605 583 605 0.98 9 18 8.1e-05 0.0036 17.3 6.7 1 23 611 633 611 633 0.97 10 18 5.2e-06 0.00023 21.0 5.7 1 23 639 661 639 661 0.98 11 18 1.2e-05 0.00054 19.9 5.7 1 23 667 689 667 689 0.97 12 18 2.5e-07 1.1e-05 25.2 6.2 1 23 695 717 695 717 0.98 13 18 1.7e-07 7.7e-06 25.7 5.2 1 23 723 745 723 745 0.99 14 18 2.9e-05 0.0013 18.7 6.7 1 23 751 773 751 773 0.97 15 18 6.3e-06 0.00028 20.8 9.3 1 23 779 801 779 801 0.97 16 18 8.3e-05 0.0037 17.3 0.3 1 23 807 829 807 829 0.97 17 18 0.0024 0.11 12.7 3.6 1 23 839 861 839 861 0.99 18 18 0.00029 0.013 15.6 8.2 1 23 867 889 867 890 0.94
Sequence Information
- Coding Sequence
- ATGAATAATCAAGAGCAGCATCATCCTGCTCCAATGAGCACTGCCTCTCATTCGGAAAGAGGCGATGTCAACAATCGAGAGGCACATGCCTCTAATGTTGTGTCAAATGTCGCTAAATATTGGGTCTTAACGAATCTTTTCCCCAATCCCATGGCACAGaTTCCGATGTCAGGAAACCTGGCCCCTCTAGCCCTTTCGAGCACAACCATAACAGCAAGTGGAGACTCGGGGACCAGTGATAGTCACACAACAACTACCCAGAGTATGAAAGGCATAAAAGTCTTAAGTAAATCGGGTTCAAATTCATCTCAGCAGATTGAAAATTCAGTTCATTGCCAGCCGACGGTCCATGAAATCCCACAAATGGATGGTGCCCACGAGCATCAGCTCATCAGCGGCCTTACTCCTCAACAGCATCACCAATTAGTGCAGCAGGTTGCTCAGCATCAGGTTTTGGCAGAACAGCAACAGCCGCCCTCTGGAAATGATCAGTCATctcagcaacaacaacaacagcagcagcaacaacaacaacaacaacaacaacaacagcaacaacaacagcagcagcaacaacaacagcagcagcaacaacaacagcagcagtcTCAGCCTCCTCCTCCCCCACCGCCCCCCTCCTCACAGCAAAGTCAACCAAGCAGGTCGCATTCTTCGTCAGAAGTCAAAAATAGTACATCTCCTCAGAATGAAGCCAGTATGAAGGATGTGCGACCGATCATCAGTATGCCGCATGCAAGttttcaaattcaagatggcaaAGGCCCTCCTCACATGATGGACTTCCGAGCTCTAGATGGATCTATCTTCAAGATTGCCGCTAATGGTGAACAGGATCTATCGAAAAGTCTGGGTGTTGAAATGGTGCAAAATATGTATAAAGTGAACGTCGAGGACATTAACCAGCTGTTGGCATATCATGAAGTGTTTGGTAAACTTCAACCAGGCGAGGTGCAAGCCGTGCCACAAAACGCAGCAGCTTTGTTGCACCATGCCAGCCACTCAGCTGGCAGTGTAACCATCCCAAAATCGGAGTGTGAATCTCTCGTTGGCTCTTCAACAAACATAGGTGATGACAATTCCATTTCATCTGTAACGCCCTCCCCATCGCCGGCTCCTCCTTTGGTTGCTGGCAGTCATCCCTGTGATATTTGCGGCAAGGTTTTTCCGTATAGGTACCAGATGATAGTTCACAGGCGGTATCACACAGAAAGAAAACCATTTTCCTGCCAGGTATGTGGGAAAGCCTTTGAGCTGAGTGCTGAACTTCTTGAGCATGGTAAAATTCATGTTGGCAGCGGCATGTTCACCTGCACAATGTGTTTTCAAGTTTTTGCCAATGATCAAAGTTTAGAGAGGCATGTCAAAAGGCATACAACTGACAAGCCCTATTACTGTTCAATTTGCGGCAAGAGCTTTGCGCGGAAAGAACACTTGGACAACCACACTAGATGTCACACTGGTGAAACCCCCTATAGATGTCAGTACTGTGGGAAAAACTTCACTCGCAAAGAACACATGGTAAACCATGTTCGTAGTAAGCACACTGGCGAAACTCCCCACCGCTGTGACATCTGCAAGAAAACTTTTACTCGTAAAGAACATTATATGAATCACGTTATGTGGCATACGGGTGAAACTCCTCACATCTGTCACCTATGCAACAAAAAGTTCACACGCAAAGAACATTTGAACAATCACATTAGATCGCACACAAACGATACTCCCTTCCGTTGTGAAATTTGCGGGAAGTCTTTCACGAGGAAGGAACACTTCACCAATCACATCATGTGGCACACTGGCGAAACTCCTCATCGGTGTGACTTCTGCTCGAAAACTTTCACTCGAAAAGAACACCTTTTGAATCATGTACGACAACACACGGGTGAATCTCCTCACCGTTGCACTTTTTGTCCCAAGTCATTCACTCGCAAAGAACACTTGGTTAACCACATTCGCCAACACACAGGTGAAACGCCCTTTCATTGCCCACACTGTCCGAAAGCGTTCACACGAAAAGACCATCTTGTCTACCACGTCAGGCAGCACACAGGAGAGTCCCCGCATAAGTGCCAGTATTGTGGAAAGACCTTCACACGCAAAGAGCACTTAACCATTCACATTAGGCAGCATACTGGAGAGTCGCCCTTTCGTTGCACATACTGCTCAAAGACTTTCACGCGCAAAGAGCACCTAACAAATCACATCCGAGTGCACACAGGAGAGTCTCCTCATCGATGTGATTTCTGTCAGAAATCATTCACGCGCAAAGAGCACCTAGTGAAACATGTACGTCAACATTCCGGTGAGACAGAGCATAATTGTCACATTTGCTCAAAACCGTTCACACGAAAGGAGCACTTGATCCATCATATGCGCACACACACTGGTGAGCGTCCCTATGCTTGCGACGAGTGTGGAAAGACATTCCCACTGAAAGGCAATTTGTTGTTCCACCAGAGATCTCACCAGAAGGGCTTACCCCTTGCACGGCCGTTTAAGTGCGAATTCTGCCCCAAAGATTTTGCGTGCAAAGGCCACTTGGTGTCGCATCAACGTGTCCACAACACAGAACGGCCGCATGCATGCCATCAGTGTAGTAAGACTTTTGTCGACAAAGGCAATCTTCTTAAGCACATCCACAAGCATCACAGTCCTGGTGACATCATCTTCGTTGCGCCATCTTCCTCTGTCGTCACATCCGTCGCCAGCATGCAGGCATCACAGTCGCAGCAGCAGGAAGGACCATCCTCAGGAGCACAACCTCTCTCGATACCTATGGTCTCCATGTCGTCCTCAATTCCAGCGTCACATCACTCGCAGCAATCTTCTGTTGTTCAATCCCCTCCGGTTTCCATGCACCATGCgcctcccccacccccacccacTCCATCCCCTATTGCTCTAGTTGTACCTGTCCCAACAAATACAGTACTTGCTACTTACTAG
- Protein Sequence
- MNNQEQHHPAPMSTASHSERGDVNNREAHASNVVSNVAKYWVLTNLFPNPMAQIPMSGNLAPLALSSTTITASGDSGTSDSHTTTTQSMKGIKVLSKSGSNSSQQIENSVHCQPTVHEIPQMDGAHEHQLISGLTPQQHHQLVQQVAQHQVLAEQQQPPSGNDQSSQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSQPPPPPPPPSSQQSQPSRSHSSSEVKNSTSPQNEASMKDVRPIISMPHASFQIQDGKGPPHMMDFRALDGSIFKIAANGEQDLSKSLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQPGEVQAVPQNAAALLHHASHSAGSVTIPKSECESLVGSSTNIGDDNSISSVTPSPSPAPPLVAGSHPCDICGKVFPYRYQMIVHRRYHTERKPFSCQVCGKAFELSAELLEHGKIHVGSGMFTCTMCFQVFANDQSLERHVKRHTTDKPYYCSICGKSFARKEHLDNHTRCHTGETPYRCQYCGKNFTRKEHMVNHVRSKHTGETPHRCDICKKTFTRKEHYMNHVMWHTGETPHICHLCNKKFTRKEHLNNHIRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTFCPKSFTRKEHLVNHIRQHTGETPFHCPHCPKAFTRKDHLVYHVRQHTGESPHKCQYCGKTFTRKEHLTIHIRQHTGESPFRCTYCSKTFTRKEHLTNHIRVHTGESPHRCDFCQKSFTRKEHLVKHVRQHSGETEHNCHICSKPFTRKEHLIHHMRTHTGERPYACDECGKTFPLKGNLLFHQRSHQKGLPLARPFKCEFCPKDFACKGHLVSHQRVHNTERPHACHQCSKTFVDKGNLLKHIHKHHSPGDIIFVAPSSSVVTSVASMQASQSQQQEGPSSGAQPLSIPMVSMSSSIPASHHSQQSSVVQSPPVSMHHAPPPPPPTPSPIALVVPVPTNTVLATY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -