Btab001551.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bemisia tabaci
Gene Symbol
-
Assembly
GCA_903994105.1
Location
NW:4586965-4594747[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 3 1.4e+02 2.9 0.0 13 23 209 219 207 219 0.89
2 22 3.9e-05 0.0017 18.3 0.9 1 23 225 247 225 247 0.98
3 22 9.2e-06 0.00041 20.2 2.8 1 23 253 275 253 275 0.98
4 22 5.1e-05 0.0023 17.9 6.8 1 23 281 303 281 303 0.99
5 22 0.00016 0.0073 16.3 7.2 1 23 309 331 309 331 0.99
6 22 1.1e-05 0.0005 20.0 2.8 1 23 337 359 337 359 0.98
7 22 0.00013 0.006 16.6 6.1 1 23 365 387 365 387 0.99
8 22 7.2e-06 0.00032 20.6 2.3 1 23 393 415 393 415 0.98
9 22 0.0023 0.1 12.7 2.7 1 23 421 443 421 443 0.98
10 22 1.3e-06 6e-05 22.9 2.8 1 23 449 471 449 471 0.99
11 22 0.52 23 5.3 1.0 1 18 477 494 477 499 0.91
12 22 0.00039 0.017 15.1 1.9 1 22 505 526 505 526 0.97
13 22 6.9e-05 0.0031 17.5 3.4 1 23 533 555 533 555 0.98
14 22 0.00011 0.0047 16.9 5.8 1 23 561 583 561 583 0.99
15 22 7.2e-06 0.00032 20.6 2.3 1 23 589 611 589 611 0.98
16 22 5.9e-06 0.00026 20.9 6.2 1 23 617 639 617 639 0.98
17 22 0.0001 0.0047 16.9 4.3 1 23 645 667 645 667 0.98
18 22 1.3e-06 6e-05 22.9 2.8 1 23 673 695 673 695 0.99
19 22 0.00021 0.0096 16.0 3.5 1 23 701 723 701 723 0.99
20 22 1e-06 4.7e-05 23.2 3.5 1 23 729 751 729 751 0.98
21 22 0.00021 0.0096 16.0 3.5 1 23 757 779 757 779 0.99
22 22 1.6e-06 7.1e-05 22.7 3.4 1 23 785 807 785 807 0.98

Sequence Information

Coding Sequence
ttaaaaattcagaataaagctgaaaatctcaatacaatCGTTCAATCGGAAAATTGGTGCTCGAAccagctttttccctctTTCCACCAAACTGTAAAAGAGGATCCCCAGGGAGACGTGTCGAGGATTTCTTGCACGAGCCCTTCAATGCAGGCTGTACCTGAAGAGTGCACCAGCCCGGAGTCTAGCGGTATGTCTGGCAACCCATCTTCCCAATCTGTAGAAAGTCGCCTTGAAGATTCCAACAATACCCGACTTGCATCAGTAGAAGAGAACCAAGAGACCTCGGTCTCGTCCATGTTCTATTCTCCCTCCGCTCTTCCCCCCAAAATCGAATGCGAGGATGAAACAGTTGATGCAAGTTGGACTAAGCAGCTACACACAAGTATTGACATTAAGAGTGAACTCACTCCCCAGACGGATGAGTCAGAACTCAGGTTGGGACGAGGAGGAGCAGAACACGATTTGGAGAATGATATTCGTGATTTTGTCACCGTTACAGCGCGAGTGAAGAGGGAGATCATGAGCTCTCCACTTCCCGACCAATGTAATGAAAATTGGTTTGACCTTTCACAAACGAATATCGAATTTAAGCGGGAACCCTCTACCCAGACAAACGCATCAGAATCCGAGTTGGTCGAACATATTcgaacgcacactggtgagaaaccattcacaTGCGGCGAGTGTACGAgccttttttcttccaaaagcgcTTTAACAACTCACATGCAAACGCACCCTGGCGAggaaccattcagttgcagtcattgctcctccCAATTCAGTAGAAAAGGCAATTTAGCGAGACACATGCGagcgcatactggtgagaaaccattcactTGCAGTCATTGCACTGCATGCTTCGCTCACAAACAGTCTTTGACGGCACATATtcgcacgcatactggtgagaaaccatatagttgcagtcattgcacagCATGCTTTGCCCGCAAACATTCTTTAACGGAACATGTTCgtacgcatactggtgagaaaccattcagttgcagtcattgcaagGCATTCTTCGCTCAAAAACAGTCTTTGACGGCACATATTCGCACGCATACGGGTGAAAAACCATatagttgcagtcattgcacagCATGCTTTGCTCGCAAAAATACTTTATCGAAACATGTtcgaacgcatactggtgagaaaccattcagttgcaacCATTGCACGGCCTCATTTGCTCAGAAAAGTGTTTTGACAACACATATCCGGACGCATACTggagagaaaccattcagttgcagtcattgctcggcctcatttcttatgaaaagtCCTTTGACAACacacatgcgaacgcacactgCCGAGAAACCATATAGTTGCAGTTATTGCACGGCAtgcttttctcagaaaaataatttgataattCACATCCGGACGCATACTGGAGAGAAACCATatagttgcagtcattgctcctccCAATTCAGTGTAGAAGGCAATTTGAAGAAACGCATCCGGAagcacactggtgagaaaccattcagttgcagtcattgctcctccCAATTCAGTACAGAAGGCAATTTCAAGATACACATGCGAACGAAcactggcgagaaaccattcagttgcagtcattgcacgtCATTCTTCGCTCAAAAACAGTCATTGACGGCACATATtcgcacgcatactggtgaAAAACCATatagttgcagtcattgcacagCATGCTTTGCTcgcaaaaaatatttaacggaacatgttcgaacgcatactggtgagaaaccattcagttgcaacCATTGCACGGCCTCATTTGCTCAGAAAAGTGTTTTGACAACACATATCCGGACGCATACTggagagaaaccattcagttgcagtcattgctcggcCTCATTTGTTAAGAAAAGTCATTTGACAACACACATGCggacgcatactggtgagaaaccattcagttgcagtcattgcactgCATGCTTCGCTCGCAAACAGTCTTTAATAGAACATGTTCGTACGCACACTGGAGAGAAACCATATAGTTGCAGTTATTGCACGGCAtgcttttctcagaaaaataatttgataattCACATCCGGACGCATACTGGAGAGAAACCATatagttgcagtcattgctcctccCAATTCAGTATAGAAGGCAATTTGAAGAAACACATGCGGAagcacactggtgagaaaccattcagttgcagtcattgctcctcctcCTTCCCTAGGAAAGATAATTTGAAGGTACACATGcgaacgcatactggtgagaaaccatatagttgcagtcattgctcctccCAATTCAGTATAGAAGGCAATTTGAAGAAACACATGCGGAAacacactggtgagaaaccattcagttgcagtcattgctcctcctcCTTCCCTAGGAAAGAGAATTTGAAGGTACACATGCGAACGCATACTGATGAGTAA
Protein Sequence
LKIQNKAENLNTIVQSENWCSNQLFPSFHQTVKEDPQGDVSRISCTSPSMQAVPEECTSPESSGMSGNPSSQSVESRLEDSNNTRLASVEENQETSVSSMFYSPSALPPKIECEDETVDASWTKQLHTSIDIKSELTPQTDESELRLGRGGAEHDLENDIRDFVTVTARVKREIMSSPLPDQCNENWFDLSQTNIEFKREPSTQTNASESELVEHIRTHTGEKPFTCGECTSLFSSKSALTTHMQTHPGEEPFSCSHCSSQFSRKGNLARHMRAHTGEKPFTCSHCTACFAHKQSLTAHIRTHTGEKPYSCSHCTACFARKHSLTEHVRTHTGEKPFSCSHCKAFFAQKQSLTAHIRTHTGEKPYSCSHCTACFARKNTLSKHVRTHTGEKPFSCNHCTASFAQKSVLTTHIRTHTGEKPFSCSHCSASFLMKSPLTTHMRTHTAEKPYSCSYCTACFSQKNNLIIHIRTHTGEKPYSCSHCSSQFSVEGNLKKRIRKHTGEKPFSCSHCSSQFSTEGNFKIHMRTNTGEKPFSCSHCTSFFAQKQSLTAHIRTHTGEKPYSCSHCTACFARKKYLTEHVRTHTGEKPFSCNHCTASFAQKSVLTTHIRTHTGEKPFSCSHCSASFVKKSHLTTHMRTHTGEKPFSCSHCTACFARKQSLIEHVRTHTGEKPYSCSYCTACFSQKNNLIIHIRTHTGEKPYSCSHCSSQFSIEGNLKKHMRKHTGEKPFSCSHCSSSFPRKDNLKVHMRTHTGEKPYSCSHCSSQFSIEGNLKKHMRKHTGEKPFSCSHCSSSFPRKENLKVHMRTHTDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-