Btab002119.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:2522137-2535870[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0007 0.031 14.3 3.5 1 23 228 250 228 250 0.98 2 22 1.5e-05 0.00066 19.6 2.8 1 23 256 278 256 278 0.98 3 22 1.8e-05 0.00082 19.3 3.3 1 23 284 306 284 306 0.98 4 22 8.9e-05 0.004 17.1 6.6 1 23 312 334 312 334 0.98 5 22 0.00012 0.0052 16.8 3.4 1 23 340 362 340 362 0.98 6 22 2.1e-05 0.00096 19.1 4.4 1 23 368 390 368 390 0.98 7 22 8.9e-05 0.004 17.1 6.6 1 23 396 418 396 418 0.98 8 22 6.6e-06 0.00029 20.7 3.5 1 23 424 446 424 446 0.98 9 22 8.9e-05 0.004 17.1 6.6 1 23 452 474 452 474 0.98 10 22 1.6e-05 0.0007 19.5 5.6 1 23 480 502 480 502 0.98 11 22 8.1e-05 0.0036 17.3 2.8 1 23 508 530 508 530 0.98 12 22 1.7e-05 0.00076 19.4 3.2 1 23 536 558 536 558 0.98 13 22 0.01 0.45 10.7 8.0 1 23 564 586 564 586 0.95 14 22 8.9e-05 0.004 17.1 6.6 1 23 592 614 592 614 0.98 15 22 3.3e-05 0.0015 18.5 2.5 1 23 620 642 620 642 0.98 16 22 3.2e-05 0.0014 18.6 2.5 1 23 648 670 648 670 0.98 17 22 3.3e-05 0.0015 18.5 3.8 1 23 676 698 676 698 0.98 18 22 8.2e-06 0.00037 20.4 10.9 1 23 704 726 704 726 0.98 19 22 1.1e-05 0.00051 20.0 0.7 1 23 732 754 732 754 0.98 20 22 3.6e-05 0.0016 18.4 2.4 1 23 760 782 760 782 0.98 21 22 2.2e-05 0.00097 19.1 3.9 1 23 788 810 788 810 0.98 22 22 0.00012 0.0053 16.8 5.1 1 23 816 838 816 838 0.98
Sequence Information
- Coding Sequence
- ATGGACACATCTCCAGATATTACTTTGAAGAAAGCATCGGGCCCAACACTTGTGACGGATTCGACGGATAACGTCCCAGCTGTTGGCAACGCAGGTACTTTAAAGCATGAAGCATCAGAATTGGACACAAAATCGGCATTTGGCGATGACCGCGCAGATCTTGTCCCCCAGCCTGTGAAAAGAGAGAACGGAACTTCATGTGATGGCTTCATCTCACCAGGACCGCACCATGGCGATTCTCTGTTCGATCTCTCCGCTCGCGTAAAATTCGAAGTAGACGAAAGTTTTACCGACCTGTTGCATACCAGTATTGACATTAAGGAAGAAGACACTTCGCAATCCGACCAATCGGAATGCCCAGTAAAAGGCACTACAAACGATTCCGGAAATGATTTGCGTCGTACAAGTAATCATGTTCCACTGACTCCGCCTGCTGGAAGTGGAAGCATCAATGACCAACGTCCCCACCAACTACAAAATCCCCGTGGAATAAAACAGGAATCAGATGGAGATGGATGCAATAGCGAAACGTCAAACAAGCCTCACATTGAAAGGGCAGTATATCCGACCAAAAGAACTGAATTCCGAAACAGACCAGTCAAAAGCACCCAACGTTCTGTATCTTCATCGCGTAAAAACCTTCCGAAACAACGTATGCGGACGCAACATGGCGAGCAAGTTTTCAGTTGCAGTAATTGCTCTTCCCCTTTTAACCGAAAAGGTCATTTGAGGCTACATACTCAAACGCACACTAGCGAGAAACCCTTCagctgcagtcattgctcttcctcttttatcCGAAAGGGTGATTTAAAGCTACATAttcgaacgcatactggcgagaaacctttcagttgcagccattgctcttcctcttttatcCGAAAACAGGATTTAAAGGTACATAttcgaacgcatactggcgagaaacctttcagctgcagtcattgctcttccACTTTTAGCCAAAAACAGCATTTAAATCTACATAttcgaacgcatactggcgagaaaccttttagctgcagtcattgctcttcctcCTTCAGACAAAGAAATGCTTTAAAGGGGCATAttcgaacgcatactggcgagaaacctttcagctgcagtcattgtttttcctccttcaGACAAAGAAGTGCTTTAAATCTACATATGCGAACGCATACcggcgagaaacctttcagttgcagtcattgctcttccACTTTTAGCCAAAAACAGCATTTAAATCTACATATTCGAACGCATACcggcgagaaacctttcagttgcagtcattgctcttcctcttttagcCGAAAGGGTGATTTAAAGCTACATAttcgaacgcatactggcgagaaacctttcagttgcagtcattgctcttccACTTTTAGCCAAAAACAGCATTTAAATCTACATATTCGAACGCATACcggcgagaaacctttcagttgccgtcattgctcttcctcttttagcCGAAAACAGGATTTGAAGCGACATAttcgaacgcatactggcgagaaacctttcagctgCAGTCATTGTTCTTCCTCCTTCGGACGAAGAAGTGCTTTAAATCTACATATTCGAAAgcatactggcgagaaacctttcagttgcagtcattgctcttcctcttttatcCGAAAGGGTTATTTAAAGGTACATAttcgaacgcatactggcgagaaacctttcagttGCATTCATTGCTCTTCCACTTTTAGCCAAAAACATCATTTAAATCTACATAttcgaacgcatactggcgagaaacctttcagttgcagtcattgctcttccACTTTTAGCCAAAAACAGCATTTAAATCTACATAttcgaacgcatactggcgagaaacctttcagctgCAGTCATTGTTCTTCCTCCTTCGGACGAAGAAGTGCTTTAAATCTACATAttcgaacgcatactggcgagaaacctttcagctgcagtcattgctcttcctctttcATTAATAAAACCGCTTTAACGGAACATATTCGCACGCATACCGGCGAGAAACCATTCATTTGCAGTCATTGCTCATCCTCTTTTCGCCAGAGAAGAGATTTAAAGGAGCATATTCGAACtcatactggcgagaaacctttcagctgcagtcattgctctACCTCCTTTAGGCGAAAACACCATTTAAAGCGACATATtcgaacgcatactggtgagaaaccttTCAGCTGCAGTGATTGTTCTTCCTCCTTCGGACGAAGAAGTGCTTTAAATCTACATAttcgaacgcatactggcgagaaacctttcagctgcagtcattgctcttcctctttcATTAATAAAAACGCTTTAACGGAACATATTCGCACGCATACCGGCGAGAAACCATTCATTTGCAGTCATTGCTCATCCTCTTTTCGCCAGAAAAGAGATTTAAAGGAGCATATTCGAACGCATCCcggcgagaaacctttcagttgcagtcattgctcttcctcttATAGCCGGAAATATACTTTGAAGCAACATATCATGACGCATACTGGTGAAGTTCAATAG
- Protein Sequence
- MDTSPDITLKKASGPTLVTDSTDNVPAVGNAGTLKHEASELDTKSAFGDDRADLVPQPVKRENGTSCDGFISPGPHHGDSLFDLSARVKFEVDESFTDLLHTSIDIKEEDTSQSDQSECPVKGTTNDSGNDLRRTSNHVPLTPPAGSGSINDQRPHQLQNPRGIKQESDGDGCNSETSNKPHIERAVYPTKRTEFRNRPVKSTQRSVSSSRKNLPKQRMRTQHGEQVFSCSNCSSPFNRKGHLRLHTQTHTSEKPFSCSHCSSSFIRKGDLKLHIRTHTGEKPFSCSHCSSSFIRKQDLKVHIRTHTGEKPFSCSHCSSTFSQKQHLNLHIRTHTGEKPFSCSHCSSSFRQRNALKGHIRTHTGEKPFSCSHCFSSFRQRSALNLHMRTHTGEKPFSCSHCSSTFSQKQHLNLHIRTHTGEKPFSCSHCSSSFSRKGDLKLHIRTHTGEKPFSCSHCSSTFSQKQHLNLHIRTHTGEKPFSCRHCSSSFSRKQDLKRHIRTHTGEKPFSCSHCSSSFGRRSALNLHIRKHTGEKPFSCSHCSSSFIRKGYLKVHIRTHTGEKPFSCIHCSSTFSQKHHLNLHIRTHTGEKPFSCSHCSSTFSQKQHLNLHIRTHTGEKPFSCSHCSSSFGRRSALNLHIRTHTGEKPFSCSHCSSSFINKTALTEHIRTHTGEKPFICSHCSSSFRQRRDLKEHIRTHTGEKPFSCSHCSTSFRRKHHLKRHIRTHTGEKPFSCSDCSSSFGRRSALNLHIRTHTGEKPFSCSHCSSSFINKNALTEHIRTHTGEKPFICSHCSSSFRQKRDLKEHIRTHPGEKPFSCSHCSSSYSRKYTLKQHIMTHTGEVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -