Btab009002.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:534198-541746[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0005 0.023 14.8 6.5 1 23 10 32 10 32 0.98 2 23 2.1e-05 0.00092 19.2 3.5 1 23 38 60 38 60 0.98 3 23 0.00016 0.0073 16.3 1.1 1 23 66 88 66 88 0.98 4 23 0.0003 0.013 15.5 5.1 1 23 94 116 94 116 0.98 5 23 0.0028 0.13 12.4 0.1 3 21 511 529 509 530 0.94 6 23 8.6e-05 0.0039 17.2 6.4 1 23 537 559 537 559 0.98 7 23 0.0038 0.17 12.0 8.2 1 23 565 587 565 587 0.98 8 23 5.8e-05 0.0026 17.7 6.8 1 23 593 615 593 615 0.98 9 23 0.0038 0.17 12.0 8.2 1 23 621 643 621 643 0.98 10 23 0.00013 0.0059 16.6 2.3 1 23 649 671 649 671 0.98 11 23 1.4e-06 6.1e-05 22.9 2.6 1 23 677 699 677 699 0.98 12 23 1.5e-05 0.00068 19.6 3.0 1 23 705 727 705 727 0.98 13 23 2.8e-06 0.00013 21.9 3.0 1 23 733 755 733 755 0.98 14 23 8.3e-06 0.00037 20.4 4.2 1 23 761 783 761 783 0.98 15 23 7.8e-07 3.5e-05 23.6 2.3 1 23 789 811 789 811 0.98 16 23 2.1e-05 0.00093 19.2 2.3 1 23 817 839 817 839 0.97 17 23 0.00014 0.0062 16.5 6.6 1 23 845 867 845 867 0.98 18 23 2e-06 9e-05 22.3 2.2 1 23 873 895 873 895 0.99 19 23 3.8e-06 0.00017 21.5 2.4 1 23 901 923 901 923 0.98 20 23 4.3e-05 0.0019 18.1 4.9 1 23 929 951 929 951 0.97 21 23 0.0016 0.072 13.2 4.1 1 23 957 979 957 979 0.98 22 23 2.1e-06 9.3e-05 22.3 2.5 1 23 985 1007 985 1007 0.98 23 23 0.0028 0.13 12.4 1.7 1 23 1013 1035 1013 1035 0.98
Sequence Information
- Coding Sequence
- atgcgaacgcacactggcgagaaaccattcagttgcagtcattgctacTCCTCTTTCAGTAGTAAAAACAAATTCAAGGTACACATGCGAACGCATACTgttgagaaaccattcagttgcagtcattgcgcAGCATGCTTTGCTCGCAAAAGTTCTTTAACGGCACATGTTCGCACGCATattggtgagaaaccattcagttgcagtcttTGTTCCTCCCAATACAGTGAAGAAGCCAACTTGAAGAGACACATGCGGACGCACTTTGGCGAGAAACCATttagttgcagtcattgcaggGCATGCTTTGCTCAGAAACAGTCTTTAACGGAACACGTTCGGACGCATACTGGTATCTTGAGCGCCGAtcagaacatcgtgcatgatATTATAACTGAACAGCCTGTCCGGTGTGGCCATGctcaacgaatggcggatgacaGATTGCCTAAGAAGGGTCTAGAATGGGTCCCTCCGAAAAGAAGACAACGGAAAGAGCACTCAGCAATCAGCACACCTGAAGACTACAATCCAGTGAATCCACCAATCGATAAAAGTGTGAAGGATCCCCAGGGAGACGTGTCGAGGATTTATTGCACGAGCCCTTCAATGCAGGCCGTGCCTGAAGCAAGCACCAGCTCGGAGTCTAGCGGTATGTCTGGCAACCCATCTTCCCACTCCGTAGAAAGTAACCTTGAAGATTCCGACAATCCCCGACTCGCATCAGTAGAAGAGACCCAAGAAACCTTCCTCTCGTCCATCTTCGATTGTCCCTCCGCTCTTCCCCCCAAAATCGAATGCGAGGATGAAAAAGTTGATGCAAGTTGGACTAACCAGCTACGTACAAGTATTGACATTAAGAGTGAACCCACTCCCCAGACGGATGGGTCAGAACTCAGGTTGGGACGAGGAGGAGCAGAACACGATTTGGAGAATGATATTCGTGATTTTCTCCTAATAACAGAGCGAGTGAAGAGAGAGAACATGAGCACTCCACTTCCCGACGAATGTAATGAAAATTTGCTTGACGTATCACTCACGAATATTGAAATTAAGAGTGAACCCCCTGCCCAAACAAACGAAGCGGAATCCAAGTTGGGAAAAGCAAAAAGAGAACTCGATTTGGACTTAAATTATAGAGATAGTGTCTCGATGGCAGAGCGAGTAAAGATAGAAAACATTGAGACTCCCCATCCCGACGAATGTGATGAAAGTTTGGCTGACCAGTTACATACGGAAATCGAAATTGAGAGTGAGCCACCTCTCCAAATGGGTAAGTCTGAAGTTAGGTTGTATAATAAGGACGGAGAGCTCGATTCGGAGGTTGATTTTCGTGCTTTCGTCCCGAAGATAACGTCACTGAAAAGAGAGAGCATCGGCACTACCTATCTCGGACAGGCCGAAGAGAACGTAGGCAAGAGAACGAGAACCCTTGCAAACGGTGAAAAAAGGAACGCTCGACACATACATGTAAATATGAGTACAGTATCCATGAgagattcgaaaaaaatgaatgccaAACAATCAATATGCAATGTTTGCGCTACATCTTTTACTACGAAAACCTCAATGGCGCGACATATTCAAATAAAAAGTGGCGAGAAActattcagttgcagtcattgctcctcctctttcagTATGAAACACAATCTCAAGGTACATATGCGAATGCAcactggcgagaaaccattcagttgcagtcattgcacggcatgctttGCTCACGAACATTCTTTAACGGAACATGTTCGCACGCATACTGAGGGGATatcattcagttgcagtcattgctcctcctctttcagTATGAAACACAATCTCAAGGTACAtatgcgaacgcacactggcgagaaaccattcagttgcagtcattgcacggcatgctttGCTCACGAACATTCTTTAACGGAACATGTtcgaacgcatactggtgagaaaccattcagttgcagccGCTGCTCCTCCTCTTTCGGTAGAAAAAACAGTTTAGAGAGACACTTGCGGACTCACACTGGCGAGAAatcattcagttgcagtcattgctcggcCTCTTTTGCTGAGAAAAGTAATTTGACAAAACACATCCGGACGCATACTGGAGAGAAACCATTCAattgcagtcattgctcggcCTCTTTTGCTATGAAATATAACTTGACAACACACATCCGAACTCATACcggcgagaaaccattcagttgcagtcattgcacggcatCCTTTACTCAAAAAGATGCTTTAACGAAACATGTtcgaacgcatactggtgagaaaccattcagttgcagccattgctcctcctctttcatTACGAAACAAAATCTCAAGGTACAtatgcgaacgcacactggcaagaaaccattcagttgcagtcattgctcggcCTCTTTTGCTGTGAAAAGTAACTTGACAAGACACATCcgaacgcatactggcgagaaaccattcAATTGTAGTCAGTGCTCCTCCTCTTTCACTAGTAAAGACATGCTAAAGAAACACATGCGAGCGCAcactggcgagaaaccattcagttgcagtcattgcacggcatgctttgctcaaaaacattctttaacggcacatgttcgcacgcatactggtgagaaaccatacagttgcagtcattgcacggccTCTTTTGCTGAGAAAAGTAATTTGACATCACACATCCGAACTCATACTGGcaagaaaccattcagttgcagtcattgctcggcCTCTTTTGCTGTGAAAAATAACTTGACAAGACACATCcgaacgcatactggcgagaaaccattcaattgtagtcattgctcctcctctttcacAAGTAAAGACAAGCTAAAGAAACACATGCGAGCGCAcactggcgagaaaccattcagttgcagtcattgcacggtATGCTCTGCTCAAAAAAATTCGTTAACGGCACATGTtcgcacgcatactggtgagaaatcattcagttgcagtcattgctcggcCTCTTTTGCTGAGAGAAGTAATTTGACAAAACACATCCGGACGCATACTggagagaaaccattcagttgcagttatTGCACGGCATGCTCTGCTCGCAATCAGTCTCTAACGGCACATGTTTccacgcatactggtgagaaactaTTCAGTTGCAGTAattgctcctcctctttcagGCATTAA
- Protein Sequence
- MRTHTGEKPFSCSHCYSSFSSKNKFKVHMRTHTVEKPFSCSHCAACFARKSSLTAHVRTHIGEKPFSCSLCSSQYSEEANLKRHMRTHFGEKPFSCSHCRACFAQKQSLTEHVRTHTGILSADQNIVHDIITEQPVRCGHAQRMADDRLPKKGLEWVPPKRRQRKEHSAISTPEDYNPVNPPIDKSVKDPQGDVSRIYCTSPSMQAVPEASTSSESSGMSGNPSSHSVESNLEDSDNPRLASVEETQETFLSSIFDCPSALPPKIECEDEKVDASWTNQLRTSIDIKSEPTPQTDGSELRLGRGGAEHDLENDIRDFLLITERVKRENMSTPLPDECNENLLDVSLTNIEIKSEPPAQTNEAESKLGKAKRELDLDLNYRDSVSMAERVKIENIETPHPDECDESLADQLHTEIEIESEPPLQMGKSEVRLYNKDGELDSEVDFRAFVPKITSLKRESIGTTYLGQAEENVGKRTRTLANGEKRNARHIHVNMSTVSMRDSKKMNAKQSICNVCATSFTTKTSMARHIQIKSGEKLFSCSHCSSSFSMKHNLKVHMRMHTGEKPFSCSHCTACFAHEHSLTEHVRTHTEGISFSCSHCSSSFSMKHNLKVHMRTHTGEKPFSCSHCTACFAHEHSLTEHVRTHTGEKPFSCSRCSSSFGRKNSLERHLRTHTGEKSFSCSHCSASFAEKSNLTKHIRTHTGEKPFNCSHCSASFAMKYNLTTHIRTHTGEKPFSCSHCTASFTQKDALTKHVRTHTGEKPFSCSHCSSSFITKQNLKVHMRTHTGKKPFSCSHCSASFAVKSNLTRHIRTHTGEKPFNCSQCSSSFTSKDMLKKHMRAHTGEKPFSCSHCTACFAQKHSLTAHVRTHTGEKPYSCSHCTASFAEKSNLTSHIRTHTGKKPFSCSHCSASFAVKNNLTRHIRTHTGEKPFNCSHCSSSFTSKDKLKKHMRAHTGEKPFSCSHCTVCSAQKNSLTAHVRTHTGEKSFSCSHCSASFAERSNLTKHIRTHTGEKPFSCSYCTACSARNQSLTAHVSTHTGEKLFSCSNCSSSFRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -