Btab009043.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bemisia tabaci
Gene Symbol
-
Assembly
GCA_903994105.1
Location
NW:364177-373673[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0008 0.036 14.2 3.2 1 23 253 275 253 275 0.98
2 25 1.6e-07 7.3e-06 25.8 2.1 1 23 281 303 281 303 0.98
3 25 6.6e-06 0.00029 20.7 3.9 1 23 309 331 309 331 0.99
4 25 2.1e-05 0.00092 19.2 5.9 1 23 337 359 337 359 0.98
5 25 0.025 1.1 9.4 2.9 1 23 365 387 365 387 0.99
6 25 8.3e-07 3.7e-05 23.5 2.9 1 23 393 415 393 415 0.98
7 25 6.4e-05 0.0028 17.6 0.5 1 23 421 443 421 443 0.98
8 25 7e-05 0.0031 17.5 1.5 1 23 449 471 449 471 0.94
9 25 4.2e-05 0.0019 18.2 3.0 1 23 477 499 477 499 0.98
10 25 4.9e-05 0.0022 18.0 4.7 1 23 505 527 505 527 0.98
11 25 8.7e-07 3.9e-05 23.5 4.7 1 23 533 555 533 555 0.98
12 25 1.4e-05 0.00061 19.7 3.1 1 23 561 583 561 583 0.98
13 25 0.00019 0.0085 16.1 2.2 1 23 589 611 589 611 0.98
14 25 0.00015 0.0069 16.4 7.9 1 23 617 639 617 639 0.98
15 25 6.1e-06 0.00027 20.8 6.9 1 23 645 667 645 667 0.98
16 25 4e-06 0.00018 21.4 3.0 1 23 673 695 673 695 0.98
17 25 0.0047 0.21 11.7 3.8 1 23 701 723 701 723 0.98
18 25 0.0047 0.21 11.7 7.1 1 23 729 751 729 751 0.98
19 25 2.3 1e+02 3.3 5.1 1 23 757 779 757 779 0.94
20 25 0.033 1.5 9.1 3.2 1 23 785 807 785 807 0.95
21 25 1.9e-05 0.00084 19.3 0.6 1 23 813 835 813 835 0.98
22 25 3.8e-05 0.0017 18.3 0.6 1 23 841 863 841 863 0.98
23 25 1.1e-06 4.9e-05 23.2 0.5 1 23 869 891 869 891 0.98
24 25 1.9e-05 0.00083 19.3 3.6 1 23 897 919 897 919 0.98
25 25 1.6e-05 0.0007 19.5 2.4 1 23 925 947 925 947 0.98

Sequence Information

Coding Sequence
ATGAATCCGTTGGCGGATACTACCCTCCAAATTTCTCAAACCGATCACTCGCCGATCGAACGTAATCCACCAATCGAATCATCAGCTTCTGGAAGAGGATCCCCTACTGTTGACTCTCGTTTTGTGAAATGTGAAGACGGACTCaatttttgtgatgaaattaccCCACCAAGGCAAGTTGAGACGATTCCTTCCAGTTCTTTAGCAAACCCTTTCTTTGTAAAATGTGAAGACGAGCTCAATTTTTGTGACGAAAATACCCCAATGAGCCAAGTTGAGACGATCCCATCCAGATCTTCCGCATTCTCTCTCTTTGTGAAATGTGAAGACGAGCCCAATTTTTCTAACGGAAATACCCCACCAAGGCAACTAGAGACGACTCCATCCGGATCTTCAGCAACCCTTTTGACCACATTTAAAACCGAACCAGGCGAAGAGAATTATATTCCGGTCGAACACTTGTATACCAGTATTGACATCAAAAGTGAATCGCCGTTGCAATCATTCGAAGGTCAATATGTCATAAACGGCGAGAATGAAGCACGAACAATTGGTAAACAAATTTGCAATCCGTTAAATCATGATCTTTTAATCACGAATAACAGCGAAGAATTTCTAGCTCCTCTGAACTGCAGTGAGCTAAGTTCAAATTTTATAGAAACATTCCCCAGTGATAAAAAAACTGCATCCCCCACAAAAACTCAAGTTGAATCTTCACATCAAGATATGGATATTCAAAGGAAAGGTCCTAAAACATTCAGTTGTAATCATTGCTCTgacattttctcccaaaaactCCAACTGCGAGAACATCTCCGAACacacactggtgagaaaccatttagTTGCAGTGAGTGTTCGGCTTCTTTTTccagaaaacaaaatttgaagaggCATATAcgaacgcacactggtgagaaaccatttagGTGCAGTCAGTGTTCGGCTTCTTTCTCCCAAAAACCGCATTTAAGGAGCCACATGAAAACGCACatcggtgagaaaccattctgTTGCAGTCACTGTTCGGCTTCTTTCTCCCGAAAAGAGTATTTAAAGGTCCATATTCGAACGCACACTGGTGAAAGACCATACAGTTGCAGTCACTGTTTGGCTTCTTTCCTCGAAAAACAAAGTTTAAAGTCCCATTtgcgaacgcacactggtgagaaaccatttagTTGCAGTGAGTGTTCGGCTTCTTTTTCccgaaaacaaaatttgaagaggCATACAcgaacgcacactggtgagaaaccattcagctGCAATGAGTGTGCGGCTTCTTTTCCCGAAAAACAAAGTTTACAGTACCATATGCGAACGCActctggtgagaaaccattcagctGCATTCAGTGTTCGGCTTCTTTTTCCGATAATCGCACTTTAAACCGTCAtatgcgaacgcacactggtgagaGACCTTACAGTTGCAGTCACTGTTCGGCTTCTTTCTCTTATAAGTCCTCTTTAAGTAATCACGTGCGTTtgcacactggtgagaaaccattctgTTGCAGTCAGTGTTCGGCTTCTTTCTCCCTAAAATCGTATTTAAGGAAccacatgcgaacgcacactggtgagaaaccatttagTTGTAGTCACTGTTCGGCttctttttcccgaaaaaacaACTTAAGGAGCCAtatgcgaacgcacactggtgagaaactATTCAGTTGCAGTGAGTGTTCGGCttctttttccgaaaattgCAGTTTAAATCGTCAtatgcgaacgcacactggtgagaGACCATACAGTTGCAGTCACTGTTCGGCTTCTTTCCCTTATAGGACCTCTTTAAATAATCACGTGCGTTtgcacactggtgagaaaccattctgCTGCAGTCACTGTTCGGCTTCTTTCTCCCAAAAACCGCATTTAAGGAGCCACATGCAaacgcacactggtgagaaaccattctgTTGCAGTCACTGCTCGGCTTCTTTCTCCCGAAAAGACCAATTAAGGAGCCATATGCGAACGCAcaccggtgagaaaccattcagttgcagtcagtGTTCGGCTTCTTTCTCCCAAAAACGGTATTTAAGGAGccacatgcgaacgcacactgatgagaaaacattcagttgcagtcagtGTTCGGCTTCCTTTTCCGTAAAACGCAGTTTAATGTGTCATATGCGAACGCACACTAGTGAGAAATCATACAGTTGCAGTCACTGTTCGGCTTCTTTCTTCCATAAGTCCTCTTTACATGATCACGTGCGTTtgcacactggtgagaaaccattcagttgcattCAGTGTTCGGCTTCTTTTTTCCGAAAAGACCATTTATTGTGCCACGTACGAACGCACGCTTGTGAGAAACTATTCAGTTGCATTGAGTGTTCGGCTTCTTTCTTCTCGAAGCACATACTAAGAAGGCACATGAGgacgcacactggtgagaaaccattcagttgcagtctgTGTTCTGCTTCTTTTGCCGGTAAAGGCAATTTCAAGATtcacatgcgaacgcacactggtgaAAAACCATACAATTGTAGTCAGTGTTTGGCTTCTTTTAGCGTTAAATCCTCTTTAGCAAGGCACGTGCGAACGCATACGGGTGAGAAACCATTTATCTGCAGTGAGTGTTCGGCTTCCTTCTCCCAAAGATTCAATTTAGAGGCCCACATGCGAtcgcacactggtgagaaaccattcagttgcagtcactGTTCGGCTACCTTCTACCAGAAATCCGACGTAAGGAAGCATATGCGAATtcacactggtgagaaaccattcagttgtaGTCACTGTTCGGCTTCTTTTCCCCGAAAAGATTCTTTGATGAGACATTTGTTAAAGCATACTGATGAGGAAGCATTCAGTAGCAATCAGTGCTCGACTTCTCTCTTCCAAAACGGCGATTAA
Protein Sequence
MNPLADTTLQISQTDHSPIERNPPIESSASGRGSPTVDSRFVKCEDGLNFCDEITPPRQVETIPSSSLANPFFVKCEDELNFCDENTPMSQVETIPSRSSAFSLFVKCEDEPNFSNGNTPPRQLETTPSGSSATLLTTFKTEPGEENYIPVEHLYTSIDIKSESPLQSFEGQYVINGENEARTIGKQICNPLNHDLLITNNSEEFLAPLNCSELSSNFIETFPSDKKTASPTKTQVESSHQDMDIQRKGPKTFSCNHCSDIFSQKLQLREHLRTHTGEKPFSCSECSASFSRKQNLKRHIRTHTGEKPFRCSQCSASFSQKPHLRSHMKTHIGEKPFCCSHCSASFSRKEYLKVHIRTHTGERPYSCSHCLASFLEKQSLKSHLRTHTGEKPFSCSECSASFSRKQNLKRHTRTHTGEKPFSCNECAASFPEKQSLQYHMRTHSGEKPFSCIQCSASFSDNRTLNRHMRTHTGERPYSCSHCSASFSYKSSLSNHVRLHTGEKPFCCSQCSASFSLKSYLRNHMRTHTGEKPFSCSHCSASFSRKNNLRSHMRTHTGEKLFSCSECSASFSENCSLNRHMRTHTGERPYSCSHCSASFPYRTSLNNHVRLHTGEKPFCCSHCSASFSQKPHLRSHMQTHTGEKPFCCSHCSASFSRKDQLRSHMRTHTGEKPFSCSQCSASFSQKRYLRSHMRTHTDEKTFSCSQCSASFSVKRSLMCHMRTHTSEKSYSCSHCSASFFHKSSLHDHVRLHTGEKPFSCIQCSASFFRKDHLLCHVRTHACEKLFSCIECSASFFSKHILRRHMRTHTGEKPFSCSLCSASFAGKGNFKIHMRTHTGEKPYNCSQCLASFSVKSSLARHVRTHTGEKPFICSECSASFSQRFNLEAHMRSHTGEKPFSCSHCSATFYQKSDVRKHMRIHTGEKPFSCSHCSASFPRKDSLMRHLLKHTDEEAFSSNQCSTSLFQNGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-