Btab005977.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bemisia tabaci
Gene Symbol
-
Assembly
GCA_903994105.1
Location
NW:2193225-2199442[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 4.9e-05 0.0022 18.0 3.7 1 23 278 300 278 300 0.98
2 19 1.3e-05 0.00056 19.8 0.2 3 23 310 330 308 330 0.94
3 19 2e-05 0.00091 19.2 1.1 1 23 336 358 336 358 0.98
4 19 1.8e-07 8.1e-06 25.6 0.5 1 23 364 386 364 386 0.98
5 19 8.9e-05 0.004 17.2 0.7 1 23 392 414 392 414 0.98
6 19 3.9e-06 0.00018 21.4 0.2 1 23 420 442 420 442 0.94
7 19 3.8e-07 1.7e-05 24.6 0.9 1 23 448 470 448 470 0.99
8 19 6.6e-06 0.00029 20.7 1.3 2 23 477 498 476 498 0.91
9 19 6.7e-07 3e-05 23.8 1.0 1 23 504 526 504 526 0.98
10 19 3.5e-06 0.00016 21.6 0.2 1 23 532 554 532 554 0.95
11 19 7.9e-07 3.5e-05 23.6 1.9 1 23 560 582 560 582 0.98
12 19 5.9e-08 2.6e-06 27.2 0.5 1 23 588 610 588 610 0.98
13 19 1.8e-06 8.2e-05 22.5 0.1 1 23 616 638 616 638 0.97
14 19 0.068 3.1 8.1 2.3 1 23 665 687 665 687 0.98
15 19 0.0011 0.051 13.7 0.5 1 23 725 747 725 747 0.96
16 19 1.6e-06 7.2e-05 22.6 0.9 1 23 753 775 753 775 0.99
17 19 3e-07 1.3e-05 24.9 1.9 1 23 781 803 781 803 0.97
18 19 0.0035 0.16 12.1 3.5 1 23 809 831 809 831 0.97
19 19 0.00073 0.033 14.3 0.4 3 23 839 859 838 859 0.95

Sequence Information

Coding Sequence
atgGATCTAATGAAGAATGACATTCTCACTGAAAACAGATATCTAGCTCAGGATCTCAATCACCGAGTTTATGAACGCATACCTGAAAAATCAGACTTTGACTTTGCTGTTCCAACTCCACATGTGAACCATGTAGACACATTAAATGTGTTGAATCTCGAAACCCTTTCAAAAATGATCGGACCAGATGCATCCCAAGTCGCAGCCTCATTTCCTCTTCTACCCAGGTCCAATCACTCTTTCCTGGAAAACCGTAACAATCGTAATGCTTTTTTAGATAACCGCAATTTCTTACGCCTCACTTTTTCAAATAGCCGAAACGTTAATCACTCCTTTGCTGAAAATCAAACTGAAAATCatccattttctgaaaatcggAATGGAAGTATTACTTTCTCCGAAAATCGCAGTGAAAGTCAGCCATTCTCCGATCAAAACGCAGCATTTTCTGACAGCCAAAACTGTAGCTCATCATTTTCTGATGATCAAAGTCAAAGCTCTCCTTTTCCAAGTAGTTCAAATGGAAACTCCCAATTCAGAGAAAGACAAAATGAAGCATCATCTCTAAATAGTTACTCTAACCTTGTGCCTTCACCTCAGTCTGAGCTCCATGAGAGAGGATCGCAACCAGAATTTGATGGTTTTAAAAATGGCAGCACCGACCACTCAAATGTCTGTAGTATTGATCCTGAAGTTGTTTACTCTGATGATGACGAGCCATCCAACCAATCTCTTTATTCTCATTCTTTGCCTACTTGCTCTGAGCTGCCACCACACTCTCATCCACATTGTATTACCAGTTTAGAAAGTACTCATGAAGACTCAGCTGaatttcagtgtaaaatttgtaaaaaagtcCTTGCTAATAAGCATAatctaaaaatgcattttatgaCCCATTCGGGAGAAAATCGTGCCAAATTATTTTGCCCGACCTGTGGGAAAGGTTTCATCAAACCGTCTGATCTGCGAAGACATAAAGTGATCCATACTGGAGAGCGCCCATACGCATGTCAAGAATGCGATATGGCTTTCCATGACCCGTCCACATTAAAGCAACACTCTCGGACTCATTCAGGTGTCAAGCCTTATTCGTGTGGTGAATGTGGACGCAGTTTTGCATCCAACTATTCTCTACAGCGGCACATGTTTGTTCATGCGGATAAAGCCCCTTTTACATGTACTGAATGTGGTGTTGCAGTCGCGACAAAGTATGATCTCAAAATACATCACATGAAACACAACGGAAAGTTGCCGTACCCATGTTCGATCTGTAACAAAGGATTTAGTAAGCCATCTGATCTCAATCGACATAGTGTCATCCACACTGGAGAGCGACCTTATCAGTGTGAGGTTTGTAAAATGAGCTTCACCAACTCCAGTAATCTTAGGATGCACGTTCTAACTCACTCCAAAATAAAACCACACCCATGTATCACTTGCAATAAATCTTTTAGGAGGCCGTCTGAGCTCGAGAGGCATTTGCTCACTCATAGTGGAGAAAGACCATATGTATGTTCAATCTGCAATACTGCTTTTACCACAAGTTACAACCTAAAAGTTCATACTATGAAACATTCTGGAGGGTTACCCTACCCATGTCCCTCGTGTGATAAGGCTTTCAGTAAACCATCTGAATTACAGCGACACAGTTTTGTTCATTCAGGCGAAAAACCATTCTCTTGTTCACAATGTGATTTAAGTTTTACaaattccagtaatttacgcACTCATACTCTAACTCATACGGGTAAACGGCCATTTTCTTGCTCAGTTTGTGATAAAGCCTTTACACGACCTTCAGATGTCAAACGACATATGTTGACTCACACCGGTGCTCGACCCTTTGCTTGTAACCTCTGTGGTTTAGCTTTTGCAGATTCTTCCAATTTGAAAAAGCACACTTTAATTCATTTTCGATTGGATCCCTTGGCTTTGGGTGAGCAATTCAAGAATTCAAGCGAGAAAGAGAACCCAGTGAATAAGCctttatttaaatgttttctttGTTATGTCGAATTTCAGTCATCTCATGACCTAGAACTTCATTCTTTAACACATTCTGTAGATCAATCATTTTCAGAAAGTCCTCCAGTAAATGCATCTAAACAGGGACAGAACCTGTACGCTCTTCAAGATAGTAAACAGCGCTGTGCAGACAATGTAAAGCAATACTCATGTCCATCATGTGGAATGCAATTTGCTCATGCCTTGCATTTACAAGAGCATGTTGTAGTTCACTCAAACGAGCCTTCATTTCAAtgtgaaatttgtgaaaaaacgTTTATTCAGGAATCATTCTTGAAGAATCATCTTTTAACTCACACAGAGTCGAGACCTTTCAGGTGTCCAGTTTGTtcgaaaagttttaaaagctcCTCTCACCTAAAAAATCACGTAGCGATACACTCTGGTGTAAAACCTTTCATTTGCACAGTCTGTaacaaatcatttttgaaacatgcaTCTCTCCGACGACACTTTTTAACTCATGAAAGAATGAATCCAGTCGCTTGTAATCTTTGTggcaaaacatttttaaaccaAGAATACTTGAAGAAACATAGTATTATCCATGTTAACAAACCACAGTTAAATGTTTGA
Protein Sequence
MDLMKNDILTENRYLAQDLNHRVYERIPEKSDFDFAVPTPHVNHVDTLNVLNLETLSKMIGPDASQVAASFPLLPRSNHSFLENRNNRNAFLDNRNFLRLTFSNSRNVNHSFAENQTENHPFSENRNGSITFSENRSESQPFSDQNAAFSDSQNCSSSFSDDQSQSSPFPSSSNGNSQFRERQNEASSLNSYSNLVPSPQSELHERGSQPEFDGFKNGSTDHSNVCSIDPEVVYSDDDEPSNQSLYSHSLPTCSELPPHSHPHCITSLESTHEDSAEFQCKICKKVLANKHNLKMHFMTHSGENRAKLFCPTCGKGFIKPSDLRRHKVIHTGERPYACQECDMAFHDPSTLKQHSRTHSGVKPYSCGECGRSFASNYSLQRHMFVHADKAPFTCTECGVAVATKYDLKIHHMKHNGKLPYPCSICNKGFSKPSDLNRHSVIHTGERPYQCEVCKMSFTNSSNLRMHVLTHSKIKPHPCITCNKSFRRPSELERHLLTHSGERPYVCSICNTAFTTSYNLKVHTMKHSGGLPYPCPSCDKAFSKPSELQRHSFVHSGEKPFSCSQCDLSFTNSSNLRTHTLTHTGKRPFSCSVCDKAFTRPSDVKRHMLTHTGARPFACNLCGLAFADSSNLKKHTLIHFRLDPLALGEQFKNSSEKENPVNKPLFKCFLCYVEFQSSHDLELHSLTHSVDQSFSESPPVNASKQGQNLYALQDSKQRCADNVKQYSCPSCGMQFAHALHLQEHVVVHSNEPSFQCEICEKTFIQESFLKNHLLTHTESRPFRCPVCSKSFKSSSHLKNHVAIHSGVKPFICTVCNKSFLKHASLRRHFLTHERMNPVACNLCGKTFLNQEYLKKHSIIHVNKPQLNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-