Basic Information

Insect: Bemisia tabaci
Gene Symbol: -
Assembly: GCA_903994105.1
Location: NW:56933-59498[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 0.041 1.9 8.8 1.4 5 23 14 32 13 32 0.88

2 29 6.1e-05 0.0027 17.7 2.4 2 23 40 61 39 61 0.96

3 29 0.00014 0.0064 16.5 8.1 1 23 67 89 67 89 0.98

4 29 4.6e-06 0.00021 21.2 4.4 1 23 95 117 95 117 0.98

5 29 8.8e-05 0.0039 17.2 4.5 1 23 123 145 123 145 0.98

6 29 2e-05 0.00089 19.2 7.2 1 23 151 173 151 173 0.99

7 29 0.0035 0.16 12.1 7.2 1 23 179 201 179 201 0.98

8 29 0.0004 0.018 15.1 8.6 1 23 207 229 207 229 0.98

9 29 4.1e-06 0.00019 21.3 5.4 1 23 235 257 235 257 0.98

10 29 0.00042 0.019 15.0 8.0 1 23 263 285 263 285 0.98

11 29 0.00063 0.028 14.5 8.6 1 23 291 313 291 313 0.98

12 29 0.0004 0.018 15.1 8.6 1 23 319 341 319 341 0.98

13 29 0.0004 0.018 15.1 8.6 1 23 347 369 347 369 0.98

14 29 3e-05 0.0014 18.6 4.0 1 23 375 397 375 397 0.98

15 29 0.00017 0.0075 16.3 8.0 1 23 403 425 403 425 0.98

16 29 0.0014 0.065 13.3 7.2 1 23 431 453 431 453 0.98

17 29 0.0021 0.094 12.8 7.2 1 23 459 481 459 481 0.98

18 29 0.0004 0.018 15.1 8.6 1 23 487 509 487 509 0.98

19 29 0.0085 0.38 10.9 4.8 1 22 515 536 515 536 0.96

20 29 1.9e-06 8.4e-05 22.4 6.2 1 23 543 565 543 565 0.98

21 29 1.1e-06 5.1e-05 23.1 5.3 1 23 571 593 571 593 0.98

22 29 0.00011 0.0049 16.9 6.6 1 23 599 621 599 621 0.98

23 29 8.3e-07 3.7e-05 23.5 3.3 1 23 627 649 627 649 0.98

24 29 8.6e-06 0.00039 20.3 6.9 1 23 655 677 655 677 0.98

25 29 1.1 50 4.3 0.8 14 23 696 705 696 705 0.93

26 29 1.1e-06 5.1e-05 23.1 5.3 1 23 711 733 711 733 0.98

27 29 0.00011 0.0049 16.9 6.6 1 23 739 761 739 761 0.98

28 29 8.3e-07 3.7e-05 23.5 3.3 1 23 767 789 767 789 0.98

29 29 8.3e-06 0.00037 20.4 6.7 1 23 795 817 795 817 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	0.041	1.9	8.8	1.4	5	23	14	32	13	32	0.88
2	29	6.1e-05	0.0027	17.7	2.4	2	23	40	61	39	61	0.96
3	29	0.00014	0.0064	16.5	8.1	1	23	67	89	67	89	0.98
4	29	4.6e-06	0.00021	21.2	4.4	1	23	95	117	95	117	0.98
5	29	8.8e-05	0.0039	17.2	4.5	1	23	123	145	123	145	0.98
6	29	2e-05	0.00089	19.2	7.2	1	23	151	173	151	173	0.99
7	29	0.0035	0.16	12.1	7.2	1	23	179	201	179	201	0.98
8	29	0.0004	0.018	15.1	8.6	1	23	207	229	207	229	0.98
9	29	4.1e-06	0.00019	21.3	5.4	1	23	235	257	235	257	0.98
10	29	0.00042	0.019	15.0	8.0	1	23	263	285	263	285	0.98
11	29	0.00063	0.028	14.5	8.6	1	23	291	313	291	313	0.98
12	29	0.0004	0.018	15.1	8.6	1	23	319	341	319	341	0.98
13	29	0.0004	0.018	15.1	8.6	1	23	347	369	347	369	0.98
14	29	3e-05	0.0014	18.6	4.0	1	23	375	397	375	397	0.98
15	29	0.00017	0.0075	16.3	8.0	1	23	403	425	403	425	0.98
16	29	0.0014	0.065	13.3	7.2	1	23	431	453	431	453	0.98
17	29	0.0021	0.094	12.8	7.2	1	23	459	481	459	481	0.98
18	29	0.0004	0.018	15.1	8.6	1	23	487	509	487	509	0.98
19	29	0.0085	0.38	10.9	4.8	1	22	515	536	515	536	0.96
20	29	1.9e-06	8.4e-05	22.4	6.2	1	23	543	565	543	565	0.98
21	29	1.1e-06	5.1e-05	23.1	5.3	1	23	571	593	571	593	0.98
22	29	0.00011	0.0049	16.9	6.6	1	23	599	621	599	621	0.98
23	29	8.3e-07	3.7e-05	23.5	3.3	1	23	627	649	627	649	0.98
24	29	8.6e-06	0.00039	20.3	6.9	1	23	655	677	655	677	0.98
25	29	1.1	50	4.3	0.8	14	23	696	705	696	705	0.93
26	29	1.1e-06	5.1e-05	23.1	5.3	1	23	711	733	711	733	0.98
27	29	0.00011	0.0049	16.9	6.6	1	23	739	761	739	761	0.98
28	29	8.3e-07	3.7e-05	23.5	3.3	1	23	767	789	767	789	0.98
29	29	8.3e-06	0.00037	20.4	6.7	1	23	795	817	795	817	0.98

Sequence Information

Coding Sequence: ATGCAAACGCACGATGGCGAGATACCATTCAATTAcagtcattgctcctcctcATCCAGTATTGAAGATAATTTAAAGAAACACATGCGAACGCATACTGGTAATGAGAAGCTACTTAGTTGCAAtcattgctcctcctctttcagTAGTAAAGACGATTTAAAGATGCACATGGgaacgcacactggtgagaagccattcagttgcagtcattgcacggcatgcttttctcacaaaaagtctttaacggcacatgttcgcacgcatactggtgagaaaccattcagttgcaatcattgctcctcctctttcagTAGAAAAGACTATTTAGAGAtgcacatgcgaacgcacactggtgagaaacaattcagttgcagtcattgctcctcctctttcagtattaaaaacaatttaaagatgcacatgcgaacgcacactAGTGAGAAACCATTCAAATGCAGTCATTGCCCGGCATGCTTTTCTCACAAAAGGTCTTTAACGGCACATGTtcgcacgcatactggtgagaaaccattcagttgcaatcATTGCTCCTCTTCTTTCAGTTGTAAAGACTATTTAAAGATACACATGcgaacgcatactggtgagaagtcattcagttgcagtcattgcacagcatgcttttctcacaaaaagtctttaacggaacatgttcgcacgcatactggtgagaaaccattcagttgcaatcattgctcctcctctttcagtaataaaaacaatttaaagatgcacatgcgaacgcacactggtgagaaaccattcagttgcagtcattgcacagcatgcttttctcacaaaaattctTTAACGGAACATGTTCGCACGCATACCGGTGAGAAGCCATTCaattgcagtcattgcacggcatgcttttctcacaaaaagtctttaacggaacatgttcgcacgcatactggtgagaaaccattcagttgcagtcattgcacagcatgcttttctcacaaaaagtctTTAACGGAACATGTTCGCACGCATACCGGTGAGAagccattcagttgcagtcattgcacggcatgcttttctcacaaaaagtctttaacggaacatgttcgcacgcatactggtgagaaaccattcagttgcaatcattgctcctcctctttcagtattaaaaacaatttaaagattcacatgcgaacgcacactggtgagaaaccattcagttgcagccattgcacggcatgctttTCTCACAAAAGGTCTTTAACGGCACACGTtcgcacgcatactggtgagaaaccattcagttgcaatcattgttcctcctcttttcgtatgaaaaatcatttaaagatGCACGTGcgaacgcatactggtgagaaaccattcagttgcagtcattgctcctcctctttccgtatgaaaaatcatttaaagatGCACGTGcgaacgcatactggtgagaaaccattcagttgcagtcattgcacagCATGCTTTTCGCACAAAAAGTCTTTAACGGAACATGTtcgcacgcatactggtgagaaaccattcagttgcagtcattgcatggcatgcttttctcacaaaaagtctTTAACGGCACATGTTCGCACgtatactggtgagaaaccattcagttgcagtcattgcacggcatgctttTCGGACAAAAGTAATTTATCAAAGCACATACggacgcatactggtgagaaaccattcagttgcaatcATTGCTCCACTTCTTTCAGTAGTAAAGACTATTTAAAGAtgcacatgcgaacgcacactggtgagaaaccattcagttgcagttattgcacggcatgcttttctcacaaaaagtctttaacggaacatgttcgcacgcatactggtgagaaaccattcagttgcagtcattgctccgcTTCTTTTAGTAGGAAAGGCACTTTAAAGGtgcacatgcgaacgcacaccggtgagaaaccattcagttgcagtcattgcaagGCATGCTTTTCTACTACAAGTAATTTATCAAAGCACATCCggacgcatactggtgagaaaccattcatttacaatcattgctcctcctctttcagTAGTTAAGACAATTTAAAGAtgcacatgcgaacgcacactggtgagaaaccattcagttgcaatcATTGCTCCACTTCTTTCAGTAGTAAAGACTATTTAAAGAtgcacatgcgaacgcacactggtgagaaaccattcagttgcagttattgcacggcatgcttttctcacaaaaagtctttaacggaacatgttcgcacgcatactggtgagaaaccattcagttgcagtcattgctccgcTTCTTTTAGTAGGAAAGGCACTTTAAAGGtgcacatgcgaacgcacaccggtgagaaaccattcagttgcagtcattgcaagGCATGCTTTTCTAATACAAGTAATTTATCAAAGCACATCCggacgcatactggtgagaaatcattaatttacaatcattgctcctcctctttcagTAGTTAG
Protein Sequence: MQTHDGEIPFNYSHCSSSSSIEDNLKKHMRTHTGNEKLLSCNHCSSSFSSKDDLKMHMGTHTGEKPFSCSHCTACFSHKKSLTAHVRTHTGEKPFSCNHCSSSFSRKDYLEMHMRTHTGEKQFSCSHCSSSFSIKNNLKMHMRTHTSEKPFKCSHCPACFSHKRSLTAHVRTHTGEKPFSCNHCSSSFSCKDYLKIHMRTHTGEKSFSCSHCTACFSHKKSLTEHVRTHTGEKPFSCNHCSSSFSNKNNLKMHMRTHTGEKPFSCSHCTACFSHKNSLTEHVRTHTGEKPFNCSHCTACFSHKKSLTEHVRTHTGEKPFSCSHCTACFSHKKSLTEHVRTHTGEKPFSCSHCTACFSHKKSLTEHVRTHTGEKPFSCNHCSSSFSIKNNLKIHMRTHTGEKPFSCSHCTACFSHKRSLTAHVRTHTGEKPFSCNHCSSSFRMKNHLKMHVRTHTGEKPFSCSHCSSSFRMKNHLKMHVRTHTGEKPFSCSHCTACFSHKKSLTEHVRTHTGEKPFSCSHCMACFSHKKSLTAHVRTYTGEKPFSCSHCTACFSDKSNLSKHIRTHTGEKPFSCNHCSTSFSSKDYLKMHMRTHTGEKPFSCSYCTACFSHKKSLTEHVRTHTGEKPFSCSHCSASFSRKGTLKVHMRTHTGEKPFSCSHCKACFSTTSNLSKHIRTHTGEKPFIYNHCSSSFSS*DNLKMHMRTHTGEKPFSCNHCSTSFSSKDYLKMHMRTHTGEKPFSCSYCTACFSHKKSLTEHVRTHTGEKPFSCSHCSASFSRKGTLKVHMRTHTGEKPFSCSHCKACFSNTSNLSKHIRTHTGEKSLIYNHCSSSFSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -