Basic Information

Insect: Bemisia tabaci
Gene Symbol: -
Assembly: GCA_903994105.1
Location: NW:4635947-4654708[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 4.3e-05 0.0019 18.1 0.9 1 23 220 242 220 242 0.98

2 24 3.9e-05 0.0018 18.3 3.2 1 23 248 270 248 270 0.99

3 24 0.00012 0.0052 16.8 4.1 1 23 276 298 276 298 0.98

4 24 0.00012 0.0054 16.7 8.7 1 23 304 326 304 326 0.99

5 24 0.00027 0.012 15.6 9.2 1 23 332 354 332 354 0.98

6 24 1.2e-06 5.5e-05 23.0 3.1 1 23 360 382 360 382 0.98

7 24 2.5e-05 0.0011 18.9 8.2 1 23 388 410 388 410 0.98

8 24 3e-05 0.0013 18.7 7.9 1 23 416 438 416 438 0.98

9 24 8.4e-06 0.00038 20.4 4.2 1 23 444 466 444 466 0.98

10 24 0.0028 0.12 12.5 8.5 1 23 472 494 472 494 0.98

11 24 1e-06 4.6e-05 23.3 2.7 1 23 500 522 500 522 0.98

12 24 2.6e-06 0.00012 22.0 3.1 1 23 528 550 528 550 0.98

13 24 2.5e-05 0.0011 18.9 8.2 1 23 556 578 556 578 0.98

14 24 0.00015 0.0067 16.4 10.1 1 23 584 606 584 606 0.98

15 24 8.4e-06 0.00038 20.4 4.2 1 23 612 634 612 634 0.98

16 24 0.0028 0.12 12.5 8.5 1 23 640 662 640 662 0.98

17 24 1e-06 4.6e-05 23.3 2.7 1 23 668 690 668 690 0.98

18 24 3.5e-06 0.00016 21.6 4.0 1 23 696 718 696 718 0.99

19 24 3.2e-05 0.0014 18.5 6.3 1 23 724 746 724 746 0.98

20 24 3e-05 0.0013 18.7 7.9 1 23 752 774 752 774 0.98

21 24 2.6e-06 0.00012 22.0 3.1 1 23 780 802 780 802 0.98

22 24 1e-06 4.6e-05 23.3 2.7 1 23 808 830 808 830 0.98

23 24 7.4e-07 3.3e-05 23.7 2.8 1 23 836 858 836 858 0.98

24 24 9.7e-05 0.0043 17.0 4.2 1 23 864 886 864 886 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	4.3e-05	0.0019	18.1	0.9	1	23	220	242	220	242	0.98
2	24	3.9e-05	0.0018	18.3	3.2	1	23	248	270	248	270	0.99
3	24	0.00012	0.0052	16.8	4.1	1	23	276	298	276	298	0.98
4	24	0.00012	0.0054	16.7	8.7	1	23	304	326	304	326	0.99
5	24	0.00027	0.012	15.6	9.2	1	23	332	354	332	354	0.98
6	24	1.2e-06	5.5e-05	23.0	3.1	1	23	360	382	360	382	0.98
7	24	2.5e-05	0.0011	18.9	8.2	1	23	388	410	388	410	0.98
8	24	3e-05	0.0013	18.7	7.9	1	23	416	438	416	438	0.98
9	24	8.4e-06	0.00038	20.4	4.2	1	23	444	466	444	466	0.98
10	24	0.0028	0.12	12.5	8.5	1	23	472	494	472	494	0.98
11	24	1e-06	4.6e-05	23.3	2.7	1	23	500	522	500	522	0.98
12	24	2.6e-06	0.00012	22.0	3.1	1	23	528	550	528	550	0.98
13	24	2.5e-05	0.0011	18.9	8.2	1	23	556	578	556	578	0.98
14	24	0.00015	0.0067	16.4	10.1	1	23	584	606	584	606	0.98
15	24	8.4e-06	0.00038	20.4	4.2	1	23	612	634	612	634	0.98
16	24	0.0028	0.12	12.5	8.5	1	23	640	662	640	662	0.98
17	24	1e-06	4.6e-05	23.3	2.7	1	23	668	690	668	690	0.98
18	24	3.5e-06	0.00016	21.6	4.0	1	23	696	718	696	718	0.99
19	24	3.2e-05	0.0014	18.5	6.3	1	23	724	746	724	746	0.98
20	24	3e-05	0.0013	18.7	7.9	1	23	752	774	752	774	0.98
21	24	2.6e-06	0.00012	22.0	3.1	1	23	780	802	780	802	0.98
22	24	1e-06	4.6e-05	23.3	2.7	1	23	808	830	808	830	0.98
23	24	7.4e-07	3.3e-05	23.7	2.8	1	23	836	858	836	858	0.98
24	24	9.7e-05	0.0043	17.0	4.2	1	23	864	886	864	886	0.98

Sequence Information

Coding Sequence: ATGGAGAATGCCGAAGTTCAAAATCTAACGGAAAGAGCACTTAGCATACCTGAAGACTACAATCCAGTAGTTCCACCGAGTAGAAGAGGATCCTCAGGGAGACGTGTCCAGGTTGATTCCATGAGCTGTTCAATGCAGGCTGCACCTGTAGCGTGCACCAGCTCGGAGTATAGCGGTATGTCTGGCAACCCATCTTCCCAATCTGTAGAAAGTCGCCTTGAAGATTCCAACAATACCCGACTTGCATCAATAGAAGAGACCCAAGAAACCTCGGTCTCGTCCATCTTCGATTCTCCCTCCGCTCTTCCCCCCAAAATCGAATGCGAGGATGAAACAGTTGATGCAAGTTGGACTAACCAGCTACACACAAGTATTGACATTAAGAGTGAACCCACTCCCCAGACGGATGAGTCACAACTCAGGTTGGGACAAGGAGGAGCAGAACACGATTTGGAGAATGATATTCGTGATTTTGTCCCCATAACAGCGCGAGTGAAGAGGGAGATCATGAGCTCTCCACTTCCCGACCAATGTAATGAAAATTGGCTTGACCTATCACTCACGAATATCGAAATTAAGAAGGAACCCCCTACCCAAGCAATCGAATCGGACTCAAAGTCAGTCGAATATATTAGAACGCAAGCTGGTGAGATATCATTTACATGCGGCGAGTGTTCGAgccttttttcttctaaaagcgcTTTAACTACACACATGCAAACGCACACTGGCGAGGAACCATTCAGgtgcagtcattgctcctccCAATTCAGTATAAAAGGCAATTTGGCGAGACACATGCGAACGCATattggtgagaaaccattcagttgcagtcattgctcggcATGCTTTGCTCAGAAACGGGCTTTAACGGACCATGTTCGcacgcacactggtgagaaaccatatagttgcagtcattgcacagCATGCTTTGCCCACAAACATTCTTTAACGGCACATATTCGCACGCATaatggtgagaaaccattcagttgcagtcattgtaCGGCATGCTTTATTCACAAACATTCTTTAACGGCACATATTCGCACGCATaatggtgagaaaccattcagttgcagtcattgcccCTCCTCGTTCCGTAGGAAAGTGGATTTGAAGGTacacatgcgaacgcacactggcgagaaaccgttcagttgcagtcattgtaCGGCATGCTTTACTCGGAAACATTCTTTAACGGCACATATTCGCACGCATaatggtgagaaaccattcagttgcagtcattgtaCGGCATGCTttactcaaaaacattctttaaCGGCACATATTCGCACGCATaatggtgagaaaccattcagttgcagtcattgcggGGCATGCTTtgctcagaaaaaatatttaagggcACATGCTCGCACTCACACTGGGgaaaaaccattcagttgcagtcattgctccgcATCTTTTGCTCACAAACATTCTTTAACGGTACATCTTCacacgcatactggtgagaaaccatttagTTGCAGTCAATGCACGGCATGCTTTTCTCAGAAAAGTAATTTGATAATTCACATCCGGACGCATaatggtgagaaaccattcagttgcagtcattgcccCTCCTCGTTCCGTAGGAAAGAGGATTTGAAGGTACACTtgcgaacgcacactggcgagaaaccattcagttgcagtcattgtaCGGCATGCTTTACTCGCAAACATTCTTTAACGGCACATATTCGCACGCATaatggtgagaaaccattcagttgcagtcattgtaCGGCATGCTTTACTCACAAACATTCTTTAACGGCACATATTCGCACGCATaatggtgagaaaccattcagttgcagtcattgcggGGCATGCTTtgctcagaaaaaatatttaagggcACATGCTCGCACTCACACTGGGgaaaaaccattcagttgcagtcattgctccgcATCTTTTGCTCACAAACATTCTTTAACGGTACATCTTCacacgcatactggtgagaaaccatttagTTGCAGTCAATGCACGGCATGCTTTTCTCAGAAAAGTAATTTGATAATTCACATCCGGACGCATACTGGAGAGAAACCATatagttgcagtcattgctcctcctcGTTCCGTAGGAAAGTGGATTTGAAGGTacacatgcgaacgcacactggcgagaaaccgttcagttgcagtcattgtaCGGCATGCTATACTCGGAAAGATTCTTTAACGACACATATTCGCACGCATaatggtgagaaaccattcagttgcagtcattgtaCGGCATGCTttactcaaaaacattctttaaCGGCACATATTCGCACGCATaatggtgagaaaccattcagttgcagtcattgcccCTCCTCGTTCCGTAGGAAAGAGGATTTGAAGGTACACTtgcgaacgcacactggcgagaaaccattcagttgcagtcaatGCACGGCATGCTTTTCTCAGAAAAGTAATTTGATAATTCACATCCggacgcatactggtgagaaaccattcagttgcagtcattgcccCTCCTCGTTCCGTAGGAAAGAGGATTTGAATGTacacatgcgaacgcacaccggcgagaaaccattcagttgcagtcattgtaCGGCATGCTTTGCTTACAAGCAGTCTTTATTGGCACATATtcgcacgcatactggtgagtAA
Protein Sequence: MENAEVQNLTERALSIPEDYNPVVPPSRRGSSGRRVQVDSMSCSMQAAPVACTSSEYSGMSGNPSSQSVESRLEDSNNTRLASIEETQETSVSSIFDSPSALPPKIECEDETVDASWTNQLHTSIDIKSEPTPQTDESQLRLGQGGAEHDLENDIRDFVPITARVKREIMSSPLPDQCNENWLDLSLTNIEIKKEPPTQAIESDSKSVEYIRTQAGEISFTCGECSSLFSSKSALTTHMQTHTGEEPFRCSHCSSQFSIKGNLARHMRTHIGEKPFSCSHCSACFAQKRALTDHVRTHTGEKPYSCSHCTACFAHKHSLTAHIRTHNGEKPFSCSHCTACFIHKHSLTAHIRTHNGEKPFSCSHCPSSFRRKVDLKVHMRTHTGEKPFSCSHCTACFTRKHSLTAHIRTHNGEKPFSCSHCTACFTQKHSLTAHIRTHNGEKPFSCSHCGACFAQKKYLRAHARTHTGEKPFSCSHCSASFAHKHSLTVHLHTHTGEKPFSCSQCTACFSQKSNLIIHIRTHNGEKPFSCSHCPSSFRRKEDLKVHLRTHTGEKPFSCSHCTACFTRKHSLTAHIRTHNGEKPFSCSHCTACFTHKHSLTAHIRTHNGEKPFSCSHCGACFAQKKYLRAHARTHTGEKPFSCSHCSASFAHKHSLTVHLHTHTGEKPFSCSQCTACFSQKSNLIIHIRTHTGEKPYSCSHCSSSFRRKVDLKVHMRTHTGEKPFSCSHCTACYTRKDSLTTHIRTHNGEKPFSCSHCTACFTQKHSLTAHIRTHNGEKPFSCSHCPSSFRRKEDLKVHLRTHTGEKPFSCSQCTACFSQKSNLIIHIRTHTGEKPFSCSHCPSSFRRKEDLNVHMRTHTGEKPFSCSHCTACFAYKQSLLAHIRTHTGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -