Btab000546.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bemisia tabaci
Gene Symbol
-
Assembly
GCA_903994105.1
Location
NW:1863642-1899286[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 39 0.022 0.99 9.6 1.2 2 23 270 291 269 291 0.95
2 39 3.5e-05 0.0016 18.4 0.9 1 23 297 319 297 319 0.97
3 39 2e-07 9.1e-06 25.5 1.3 1 23 325 347 325 347 0.99
4 39 0.0017 0.074 13.2 2.0 1 23 353 375 353 375 0.96
5 39 0.016 0.74 10.0 0.6 1 23 381 403 381 403 0.98
6 39 1.3e-05 0.00057 19.8 1.7 1 23 409 431 409 431 0.99
7 39 0.00084 0.038 14.1 2.5 1 23 437 459 437 459 0.96
8 39 0.00017 0.0075 16.3 1.0 1 23 465 487 465 487 0.98
9 39 1.6e-05 0.00071 19.5 1.1 1 23 493 515 493 515 0.98
10 39 0.00084 0.038 14.1 2.5 1 23 521 543 521 543 0.96
11 39 0.00025 0.011 15.7 1.0 1 23 549 571 549 571 0.97
12 39 1.1e-05 0.00048 20.1 0.9 1 23 577 599 577 599 0.99
13 39 0.0097 0.43 10.7 1.4 1 23 605 627 605 627 0.97
14 39 4.1e-05 0.0019 18.2 1.3 1 23 633 655 633 655 0.97
15 39 4.1e-07 1.8e-05 24.5 0.9 1 23 661 683 661 683 0.99
16 39 0.0045 0.2 11.8 1.6 1 23 689 711 689 711 0.97
17 39 0.00027 0.012 15.6 0.9 1 23 717 739 717 739 0.98
18 39 4.7e-05 0.0021 18.0 0.7 1 23 745 767 745 767 0.99
19 39 0.00058 0.026 14.6 3.2 2 23 1079 1100 1078 1100 0.96
20 39 0.00023 0.01 15.9 0.9 1 23 1106 1128 1106 1128 0.98
21 39 2.6e-06 0.00012 22.0 0.9 1 23 1134 1156 1134 1156 0.99
22 39 0.00042 0.019 15.0 2.4 1 23 1162 1184 1162 1184 0.97
23 39 0.002 0.088 12.9 0.9 1 23 1190 1212 1190 1212 0.95
24 39 3.7e-06 0.00016 21.5 1.0 1 23 1218 1240 1218 1240 0.99
25 39 0.015 0.66 10.2 3.1 1 23 1246 1268 1246 1268 0.97
26 39 0.15 6.7 7.0 4.6 1 23 1274 1296 1274 1296 0.98
27 39 9.1e-05 0.0041 17.1 0.6 1 23 1302 1324 1302 1324 0.99
28 39 0.0011 0.049 13.7 1.6 1 23 1330 1352 1330 1352 0.97
29 39 0.0058 0.26 11.4 1.6 1 23 1358 1380 1358 1380 0.96
30 39 0.00056 0.025 14.6 1.4 2 23 1670 1691 1669 1691 0.96
31 39 5.2 2.3e+02 2.2 0.3 8 23 1704 1719 1697 1719 0.90
32 39 1.1e-05 0.00049 20.0 0.6 1 23 1725 1747 1725 1747 0.99
33 39 8.8e-05 0.0039 17.2 2.2 1 23 1753 1775 1753 1775 0.98
34 39 0.00026 0.012 15.7 0.9 1 23 1781 1803 1781 1803 0.98
35 39 2.6e-06 0.00012 22.0 0.9 1 23 1809 1831 1809 1831 0.99
36 39 0.0011 0.05 13.7 1.8 1 23 1837 1859 1837 1859 0.97
37 39 0.00014 0.0064 16.5 1.1 1 23 1865 1887 1865 1887 0.98
38 39 6.4e-05 0.0029 17.6 0.5 1 23 1893 1915 1893 1915 0.99
39 39 0.00012 0.0055 16.7 2.7 1 23 1921 1943 1921 1943 0.97

Sequence Information

Coding Sequence
ATGAATTTCCCGTCTGGAATGACGGCACCCCAACTGGACGATCCCAAAATCAAACGGGAATCAATCGAAGAAGAAGGGTTGCACCCCGAAGTCAGTGAAGGTGGGTTTCTCGCAACTTTTGACCATGCCGAATCGATACCACCCCAATTCAAGCGTCTAGAACCGTTTCCTCCCCTGATCAAAGAGGAAGCTGACAGAGTAAATGAAGACTCATCGCCAGCGCCTTTACTGCACAGTAGTGTCAAAATAAAGGATGAATCGTCTCAGATGCCTCTAATATCTGAGGCGGAGGATCTGGATGAAAAAGTTGGTTTCGTGACCGAGTGTCTCGTCCCAACTGTACTCAAAGTCGAAAAAGTCCGTGCTACGAACCTGAATGATGAATCGAGCAGCATTGCTGTAACTTTTTCAGAATCTGAGTTGCTAAAATCACGGAAGCTATCCGTGAAAATTGTGGATCTTTTCTCCAGATCCGATCGTCGACTTGGGAAAGCTCATACCAATTCTGCATCTTGCGAGTGCAAATATTGTAGCGAGGACGGCGGACTTACGCTTTTCGACGGAGGTACCCCGAATATCTTGAGGGGAAACGTACCGTCGAAATCTGGCCATGCGCTTTTGCGTTCCAAAGAGAATTCCGGAAGTTCGGCACAGCTGACGGACGGAACAGCACCTCTTCCTGAAAACATAGGAAATTCCGATGAATATTCTACCACCGTTAGCAGAGGAGACCCGCACAACTTCGACGCAGCTTATTCAGGATCATCGTTGCTGCAGAGGAATGTTGAGACGCGATCCGGAATGTTGAGTTGCAATCAGTGCAATGCATCTTTCAAAACAaagcaaattttaaagaatcatAAACTTGTCCATACAGATGAAAGACCGTTCAGTTGCACTAAGTGCAATGCATcttttaaaaggaagaaaaatttggTTATTCATGCGATGATTCATACGGGCTTGAAACCGTTTACTTGCAGTGAGTGTAATGCATCTTTTAATCGTAAGAGTGATTTACGTAGGCATATAATGACTCATAGGGAtgaaaaaccattcagttgcgaTCAGTGCAATGCGTCTTTCAAAAAAAAGCGTTATTTAAATCAACATAACCTTGTCCATACAGACGAAAGACCGTTCAGTTGCGATCAGTGCAATGCatcttttaaatggaagaaaagttTGGTTAGTCACGTGATGAGTCATACGAGCTTAAAACCGTTTACATGCAGTGAGTGTAATGCATCTTTTAATCAAAAGAGTGTTTTACGTAGGCATAGAATGACTCATACGGATGGaaaaccattcagttgcgaTCAGTGCAATGCATCTTTCAAAACAAAGCGTCTTTTAAAGAGTCATAAATTCGTTCATACGGATGAAAGACCGTTCAGTTGCACTAAGTGCAATGCatcttttaaaaggaaaaacggTTTGGTTAGTCACGTGATGAGTCATACGAGCTTGAAACCGTTTATTTGCAGTGAGTGTAATGcatcttttaaattaaagagtgcTTTACGTAGGCATAGAATGACTCATACGGATGGaaaaccattcagttgcgaTCAGTGCAATGCATCTTTCAAAACAAAGCGTCTTTTAAAGAGTCATAAATTCGTTCATACGGATGAAAGACCGTTCAGTTGCACTAAGTGCAATGCATCTTTTAAAAGGAAGAACGGTTTGGTTAGTCACGTGTTGAGTCATACGAGCTTGAAACCGTTTACTTGCAGTGAGTGTAATGCATCTTTTAATCAAAAGAGTGTTTTACGTACGCATATAATGACTCATACGgatgagaaaccattcagttgcgaTCAGTGCAATGCATCTTTCAAAACAaagcaaattttaaagaatcatAAACTTGTCCATACAGATGAAAGACCGTTCAGTTGCACTAAGTGCAATGCATcttttaaaaggaagaaaaatttggTTATTCATGCGATGAGTCATACGGGCTTGAAACCGTTTACTTGCAGTGAGTGTAATGCATCTTTTAATCAAAAGAGTGCTTTACGTAGGCATATAATGACTCATACGGAtgaaaaaccattcagttgcgaTCAGTGCAATGCATCTTTCAAAACAAAGTATATTTTAAAGAATCATAAACTTGTCCATACAGATGAAAGACCGTTCAGTTGCACTAAGTGCAATGCATCTTTTAAAAGTAAGAACGGTTTGGTTAGTCACGTGATGAGTCATACGAGCTTAAAACCGTTTACTTGCAGTGAGTGTAAtgcatctttaaaattaaagagtGATTTACGTAGGCATATAATGACTCATAGGGAtgaaaaaccattcagttgcgaTTAcccccccctcccccaactaAATCTGTATATTATTAAGTTTGGAATATCCAAACGAATGATTTGTCAAGTTTCAAAGTCagctgaaaaaactgaaatgaacTTACCCTCTGGAAAGACGGCACCCGAACTGGACGATCCCAAAATCAAACGGGAATCAATCGAAGAAGGGTTGCACCCCGAAGTCAGTGAAGGTGGGTTTCTCGCAACGTTTGACCATGCCAAATCGATACCATTACCACCCCAATCCAAGCGTCCAGAACCGTTCGTTCCCCTGATCAAAGAGGAAGCTGACAGCGAAAATGATTACTCATCGCCAGCGCCTTTACTGCACAGTAGTGTCAAAATAGAGGATGAATCGTCTCAGATGCCTCTAATATCTGAGGCGGAGGAACTGGATGAAAAAGTTGGTTTCGTGACCGAGTGTCTCGTCCCAACTGTACCCAAAGTCGAAGAAGTCCATGCTACGAACCTGATCGATGAATCGAGCAGCATTGCTGTAACTTTTTCAGAATCTGACTTGGTACAATCAAAGAAGCTCTCCGTGAAAATTGTGGATCTTTTCTCCAGATCCGATCGTCGACTTGGGAAAGCTCATATTAATTCTGCATCTTGCGAGTGCAAATATTGTAGCGAGGACGGCGGACTTGCGCTTATCGACGGAGGTACCCCGAATAACTCGAGGGGGAACGTACCGTCGAAATCTGGGCAGGCACTTTTGCGTTCAAAAGAGAATTCCGGAAGTTCGGCACAGCTGACGGACGGAACAGCACCTCTTCCTGAAAACATAGGAAATTCCGATGAATATTCTACCTTCGTTAGTAGAGGAGACCCGCACAACTTCGACGCAGCTCATTCAGGATCCTCGTTGCTGCAGAGAAATGTTGAGACGCGATCCGGAATGTTGAGTTGCAATCAGTGCAATGCATCTTTCAAAACAAAGCATCTTTTAAAGAATCACAAACTTGTCCATACAGATGAAAGACCGTTCAGTTGCACTAAGTGCAATGCATCTTTTAAAAGTAAGACCGGTTTGGTTAGTCACGTGATGAGTCATACGAGCTTGAAACCCTTTACTTGCAGTGAGTGTAATGcatcttttaaattaaagagtgcTTTACGTAGGCATATAATGACTCATACGGAtgaaaaaccattcagttgcgaTCAGTGCAATGCATCTTTCAAAACAAAGCGTCTTTTAAAGAGTCATAGATTTGTCCATACGGATGAAAGACCGTTCAGTTGCATTAAGTGCAATGCATCTTTTAAAAGGAAGAACGGTTTGGTTAGTCACATGATGAGTCATACGAGCTTGAAACCGTTTACTTGCAGTGAGTGTAATGcatcttttaaattaaagagtgcTTTACGTAAGCATATAATGACTCATACGGAtgaaaaaccattcagttgcgaTCAGTGCAATGCATCTTTCAAAACAAAGCATATTTTAAAGAATCATAAACTTGTCCATACAGATGAAAGACCGTTCAGTTGCACTAAGTGCAATGCATcctttaaatggaagaaatgttTCGTTAGTCACATGATGAGTCATACGAGCTTGAAACCGTTTACTTGCAGTGAGTGTAATGcatcttttaaattaaagagtgtTTTACGTGAGCATATAATGACTCATGCGGATGAAAAATTCTTCAGTTGCGATCAGTGCAATGCATCTTTCAAAACAAAGCGTGTTTTAAAGCAACATAAACTTGTCCATACAGATGAAAGACCGTTCAGTTGCGATCAGTGCAATGCATCTTTCAAAGAAAAGCGTCGTTTAAAGAATCATCGACTCGCCCATACGGATGTAAAACCCTTTAGTTGCAATGAGTGTCATGCATCTTCagctgaaaaaactgaaatgaacTTACCCTCTGGAAAGACGGCACCCCAACTGGACGATCCCAAAATCAAACGGGAATCAATCGAAGAAGAAGGGATGCACCCCGAAGTCAGTGAAGGTGGGTTTCTCGCAACTTTTGACCATGCCAAATCGATACCACCCCAATCCAAGCGTCCAGAACCGTTCGCTCCCCTGATCAAAGAGGAAGCTGACGGCGAAAATGAAGACTCATCGCCAGCGCCTTTACTGCACAGTTGTGTCAAAATAAATGATGAATCGTCTCAGATGCCTCTAATATCTGAGGCGGAGGAACTGGATGAAAAAGTTGGTTTCGTGACCGAGTGTCTCGTCCCAACTGTACCCAAAGTCGAAGAAGTCCATGCAACGAACCTGATCGATGAATCGAGCAGCATTGCTGTaactttttcagaatttgaCTTGGTAAAATCAAAGAAGCTCTCCGTGAAAATTGTGGATCTTTTCTCCAGATCCGATCGTCGACTTGGGAAAGCTCATACCAATTCTGCATCTTGCGAGTGCAAATATTGTAGCGAGGACGGCGGACTTACGCTTTTCGACGGAGGTACCCCGAATATCTTGAGGGGAAACGTACCGTCGAAATCTGGCCAGGCGCTTTTGCGTTCAAAAGAGAATTCCGGAAGTTCGGCACAGCTGACTGACGGAACAGCACCTCTTCCTGAAAACATAGGAAATTCCGATGAATATTCTACCTTCCTCAGTAGAGGAGACCCGCACAACTTCGACGCAGCTCATTCAGGATCATCTTTGCTGCAGAGGAATGTTGAGACGCGATCCGGAATGTTGAGTTGCAATCAGTGCAATGCATCTTTCAAAACAAAGCGTCTTTTGAAAGATCATAAACTTGTCCATACAGATGGAAGACCGTTCAGTTGCACTAAGTTCAATGCATCTTTTAAAAGTAAGAACGGTTTGGTTAGTCACGTGATGAGTCATACGAGCTTGAAACCGTTTACTTGCAGTGAGTGTAATGCATCTTTTAATCTAAACAGTGATTTACGTCAGCATATAATGACTCATGCGGAtgaaaaaccattcagttgcgaTCAGTGCAATGCATCTTTCAAAACAAAGCGTTATTTAAGGAATCATAGACTCGTCCATACGGATGAAAGACCGTTCAGTTGCACTAAGTGCAATGCatctttcaaaagaaagaacGGTTTGGTTCTTCATGTGATGAGTCATACGAGCTTGAAACCGTTTACTTGCAGTGAGTGTAATGcatcttttaaattaaagagtgcTTTACGTAGGCATATAATGACTCATACGGAtgaaaaaccattcagttgcgaTCAGTGCAATGTATCCTTCAAAACAAAGCGTGTTTTAAAGCAACATAAACTTGTCCATACAGATGAAAGGCCGTTCAGTTGCACTAAGTGCAATGCATCTTTTAAAAGGAAGACCGGTTTGGTTAGTCACGTGATGAGTCATACGAGCTTGAAACCGTTTACTTGCAGTGAGTGTAATGcatcttttaaattaaagagtgtTTTACGTGTGCATATAATGACTCATGCTGTTGAAAAATTCTTCAGTTGCGATCAGTGCAATGCATCTTTCAAAACAAAGCGTTATTTAAGGAAACATAAACTCGTCCATACGGATGAAAGACCCTTTAGTTGCAATGAGTGTCATGCATCTTTTAAGTGGAAGCGTGATTTTAGGGAGCATTGTTTAAAGAAACATTCGAGTAAAAAGACTGCGTTAAGTGTTTAA
Protein Sequence
MNFPSGMTAPQLDDPKIKRESIEEEGLHPEVSEGGFLATFDHAESIPPQFKRLEPFPPLIKEEADRVNEDSSPAPLLHSSVKIKDESSQMPLISEAEDLDEKVGFVTECLVPTVLKVEKVRATNLNDESSSIAVTFSESELLKSRKLSVKIVDLFSRSDRRLGKAHTNSASCECKYCSEDGGLTLFDGGTPNILRGNVPSKSGHALLRSKENSGSSAQLTDGTAPLPENIGNSDEYSTTVSRGDPHNFDAAYSGSSLLQRNVETRSGMLSCNQCNASFKTKQILKNHKLVHTDERPFSCTKCNASFKRKKNLVIHAMIHTGLKPFTCSECNASFNRKSDLRRHIMTHRDEKPFSCDQCNASFKKKRYLNQHNLVHTDERPFSCDQCNASFKWKKSLVSHVMSHTSLKPFTCSECNASFNQKSVLRRHRMTHTDGKPFSCDQCNASFKTKRLLKSHKFVHTDERPFSCTKCNASFKRKNGLVSHVMSHTSLKPFICSECNASFKLKSALRRHRMTHTDGKPFSCDQCNASFKTKRLLKSHKFVHTDERPFSCTKCNASFKRKNGLVSHVLSHTSLKPFTCSECNASFNQKSVLRTHIMTHTDEKPFSCDQCNASFKTKQILKNHKLVHTDERPFSCTKCNASFKRKKNLVIHAMSHTGLKPFTCSECNASFNQKSALRRHIMTHTDEKPFSCDQCNASFKTKYILKNHKLVHTDERPFSCTKCNASFKSKNGLVSHVMSHTSLKPFTCSECNASLKLKSDLRRHIMTHRDEKPFSCDYPPLPQLNLYIIKFGISKRMICQVSKSAEKTEMNLPSGKTAPELDDPKIKRESIEEGLHPEVSEGGFLATFDHAKSIPLPPQSKRPEPFVPLIKEEADSENDYSSPAPLLHSSVKIEDESSQMPLISEAEELDEKVGFVTECLVPTVPKVEEVHATNLIDESSSIAVTFSESDLVQSKKLSVKIVDLFSRSDRRLGKAHINSASCECKYCSEDGGLALIDGGTPNNSRGNVPSKSGQALLRSKENSGSSAQLTDGTAPLPENIGNSDEYSTFVSRGDPHNFDAAHSGSSLLQRNVETRSGMLSCNQCNASFKTKHLLKNHKLVHTDERPFSCTKCNASFKSKTGLVSHVMSHTSLKPFTCSECNASFKLKSALRRHIMTHTDEKPFSCDQCNASFKTKRLLKSHRFVHTDERPFSCIKCNASFKRKNGLVSHMMSHTSLKPFTCSECNASFKLKSALRKHIMTHTDEKPFSCDQCNASFKTKHILKNHKLVHTDERPFSCTKCNASFKWKKCFVSHMMSHTSLKPFTCSECNASFKLKSVLREHIMTHADEKFFSCDQCNASFKTKRVLKQHKLVHTDERPFSCDQCNASFKEKRRLKNHRLAHTDVKPFSCNECHASSAEKTEMNLPSGKTAPQLDDPKIKRESIEEEGMHPEVSEGGFLATFDHAKSIPPQSKRPEPFAPLIKEEADGENEDSSPAPLLHSCVKINDESSQMPLISEAEELDEKVGFVTECLVPTVPKVEEVHATNLIDESSSIAVTFSEFDLVKSKKLSVKIVDLFSRSDRRLGKAHTNSASCECKYCSEDGGLTLFDGGTPNILRGNVPSKSGQALLRSKENSGSSAQLTDGTAPLPENIGNSDEYSTFLSRGDPHNFDAAHSGSSLLQRNVETRSGMLSCNQCNASFKTKRLLKDHKLVHTDGRPFSCTKFNASFKSKNGLVSHVMSHTSLKPFTCSECNASFNLNSDLRQHIMTHADEKPFSCDQCNASFKTKRYLRNHRLVHTDERPFSCTKCNASFKRKNGLVLHVMSHTSLKPFTCSECNASFKLKSALRRHIMTHTDEKPFSCDQCNVSFKTKRVLKQHKLVHTDERPFSCTKCNASFKRKTGLVSHVMSHTSLKPFTCSECNASFKLKSVLRVHIMTHAVEKFFSCDQCNASFKTKRYLRKHKLVHTDERPFSCNECHASFKWKRDFREHCLKKHSSKKTALSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-