Btab010401.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bemisia tabaci
Gene Symbol
-
Assembly
GCA_903994105.1
Location
NW:1399-15419[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 0.0045 0.2 11.8 0.1 3 21 308 326 306 327 0.94
2 35 0.00014 0.0062 16.5 6.4 1 23 334 356 334 356 0.98
3 35 0.0062 0.28 11.4 8.2 1 23 362 384 362 384 0.98
4 35 9.4e-05 0.0042 17.1 6.8 1 23 390 412 390 412 0.98
5 35 0.0062 0.28 11.4 8.2 1 23 418 440 418 440 0.98
6 35 0.00021 0.0095 16.0 2.3 1 23 446 468 446 468 0.98
7 35 2.2e-06 9.8e-05 22.2 2.6 1 23 474 496 474 496 0.98
8 35 2.4e-05 0.0011 18.9 3.0 1 23 502 524 502 524 0.98
9 35 4.5e-06 0.0002 21.2 3.0 1 23 530 552 530 552 0.98
10 35 1.3e-05 0.0006 19.7 4.2 1 23 558 580 558 580 0.98
11 35 1.3e-06 5.6e-05 23.0 2.3 1 23 586 608 586 608 0.98
12 35 3.3e-05 0.0015 18.5 2.3 1 23 614 636 614 636 0.97
13 35 0.00022 0.01 15.9 6.6 1 23 642 664 642 664 0.98
14 35 3.2e-06 0.00015 21.7 2.2 1 23 670 692 670 692 0.99
15 35 6.1e-06 0.00027 20.8 2.4 1 23 698 720 698 720 0.98
16 35 6.9e-05 0.0031 17.5 4.9 1 23 726 748 726 748 0.97
17 35 0.0026 0.12 12.6 4.1 1 23 754 776 754 776 0.98
18 35 3.4e-06 0.00015 21.6 2.5 1 23 782 804 782 804 0.98
19 35 0.0045 0.2 11.8 1.7 1 23 810 832 810 832 0.98
20 35 7.5 3.4e+02 1.7 1.4 1 14 838 851 838 852 0.89
21 35 0.002 0.091 12.9 0.0 3 21 1196 1214 1194 1215 0.94
22 35 0.018 0.81 9.9 1.8 2 22 1223 1243 1222 1243 0.96
23 35 0.0032 0.14 12.3 9.3 1 23 1250 1272 1250 1272 0.98
24 35 1.8e-06 8.3e-05 22.4 2.9 1 23 1278 1300 1278 1300 0.98
25 35 3.6e-07 1.6e-05 24.7 1.4 1 23 1306 1328 1306 1328 0.98
26 35 0.001 0.045 13.8 7.1 1 23 1334 1356 1334 1356 0.98
27 35 2.2e-05 0.001 19.1 4.9 1 23 1362 1384 1362 1384 0.98
28 35 1.1e-05 0.0005 20.0 5.3 1 23 1390 1412 1390 1412 0.98
29 35 1.2e-05 0.00052 19.9 3.4 1 23 1418 1440 1418 1440 0.97
30 35 0.0011 0.051 13.7 8.9 1 23 1446 1468 1446 1468 0.98
31 35 9.2e-05 0.0041 17.1 4.2 1 23 1474 1496 1474 1496 0.98
32 35 4e-06 0.00018 21.4 2.1 1 23 1502 1524 1502 1524 0.99
33 35 6.9e-06 0.00031 20.7 3.0 1 23 1530 1552 1530 1552 0.98
34 35 0.17 7.7 6.8 7.0 1 23 1558 1580 1558 1580 0.98
35 35 8.6e-05 0.0038 17.2 2.8 1 23 1586 1608 1586 1608 0.98

Sequence Information

Coding Sequence
ATGCAGGCCGTGCCTGAAGCAAGCACCAGCTCGGAGTCTAGCGGTATGTCTGGCAACCCATCTTCCCACTCCGTAGAAAGTAACCTTGAAGATTCCGACAATCCCCGACTCGCATCAGTAGAAGAGACCCAAGAAACCTTCCTCTCGTCCATCTTCGATTGTCCCTCCGCTCTTCCCCCCAAAATCGAATGCGAGGATGAAAAAGTTGATGCAAGTTGGACTAACCAGCTACGTACAAGTATTGACATTAAGAGTGAACCCACTCCCCAGACGGATGGGTCAGAACTCAGGTTGGGACGAGGAGGAGCAGAACACGATTTGGAGAATGATATTCGTGATTTTCTCCTAATAACAGAGCGAGTGAAGAGAGAGAACATGAGCACTCCACTTCCCGACGAATGTAATGAAAATTTGCTTGACGTATCACTCACGAATATTGAAATTAAGAGTGAACCCCCTGCCCAAACAAACGAAGCGGAATCCAAGTTGGGAAAAGCAAAAAGAGAACTCGATTTGGACTTAAATTATAGAGATAGTGTCTCGATGGCAGAGCGAGTAAAGATAGAAAACATTGAGACTCCCCATCCCGACGAATGTGATGAAAGTTTGGCTGACCAGTTACATACGGAAATCGAAATTGAGAGTGAGCCACCTCTCCAAATGGGTAAGTCTGAAGTTAGGTTGTATAATAAGGACGGAGAGCTCGATTCGGAGGTTGATTTTCGTGCTTTCGTCCCGAAGATAACGTCACTGAAAAGAGAGAGCATCGGCACTACCTATCTCGGACAGGCCGAAGAGAACGTAGGCAAGAGAACGAGAACCCTTGCAAACGGTGAAAAAAGGAACGCTCGACACATACATGTAAATATGAGTACAGTATCCATGAgagattcgaaaaaaatgaatgccaAACAATCAATATGCAATGTTTGCGCTACATCTTTTACTACGAAAACCTCAATGGCGCGACATATTCAAATAAAAAGTGGCGAGAAActattcagttgcagtcattgctcctcctctttcagTATGAAACACAATCTCAAGGTACATATGCGAATGCAcactggcgagaaaccattcagttgcagtcattgcacggcatgctttGCTCACGAACATTCTTTAACGGAACATGTTCGCACGCATACTGAGGGGATatcattcagttgcagtcattgctcctcctctttcagTATGAAACACAATCTCAAGGTACAtatgcgaacgcacactggcgagaaaccattcagttgcagtcattgcacggcatgctttGCTCACGAACATTCTTTAACGGAACATGTtcgaacgcatactggtgagaaaccattcagttgcagccGCTGCTCCTCCTCTTTCGGTAGAAAAAACAGTTTAGAGAGACACTTGCGGACTCACACTGGCGAGAAatcattcagttgcagtcattgctcggcCTCTTTTGCTGAGAAAAGTAATTTGACAAAACACATCCGGACGCATACTGGAGAGAAACCATTCAattgcagtcattgctcggcCTCTTTTGCTATGAAATATAACTTGACAACACACATCCGAACTCATACcggcgagaaaccattcagttgcagtcattgcacggcatCCTTTACTCAAAAAGATGCTTTAACGAAACATGTtcgaacgcatactggtgagaaaccattcagttgcagccattgctcctcctctttcatTACGAAACAAAATCTCAAGGTACAtatgcgaacgcacactggcaagaaaccattcagttgcagtcattgctcggcCTCTTTTGCTGTGAAAAGTAACTTGACAAGACACATCcgaacgcatactggcgagaaaccattcAATTGTAGTCAGTGCTCCTCCTCTTTCACTAGTAAAGACATGCTAAAGAAACACATGCGAGCGCAcactggcgagaaaccattcagttgcagtcattgcacggcatgctttgctcaaaaacattctttaacggcacatgttcgcacgcatactggtgagaaaccatacagttgcagtcattgcacggccTCTTTTGCTGAGAAAAGTAATTTGACATCACACATCCGAACTCATACTGGcaagaaaccattcagttgcagtcattgctcggcCTCTTTTGCTGTGAAAAATAACTTGACAAGACACATCcgaacgcatactggcgagaaaccattcaattgtagtcattgctcctcctctttcacAAGTAAAGACAAGCTAAAGAAACACATGCGAGCGCAcactggcgagaaaccattcagttgcagtcattgcacggtATGCTCTGCTCAAAAAAATTCGTTAACGGCACATGTtcgcacgcatactggtgagaaatcattcagttgcagtcattgctcggcCTCTTTTGCTGAGAGAAGTAATTTGACAAAACACATCCGGACGCATACTggagagaaaccattcagttgcagttatTGCACGGCATGCTCTGCTCGCAATCAGTCTCTAACGGCACATGTTTccacgcatactggtgagaaactaTTCAGTTGCAGTAattgctcctcctctttcagACGGGAAGAGCACTCAGCAATCAGCACATGTGAAGACTCCAATCAAGTGAATCCACCAATCGATAAAAGTGTGAAGGATCCCCAGGGAGACGTGTCCAGGATTTATTGCACGAGCCCTTCAATGCAGGCCGTGCCTGAAGCAAGCACCAGCTCGGAGTCTAGCGGTATGTCTGGCAACCCATCTTCCCACTCCGTAGAAAGTCGCCTTGAAGATTCCAACAATCCCCAACTGGCATCACTAGAAGAGACCAAAGAAACCTTCCTCTCGTCCATCTTCGATTGTCCCTCCGCTCTTCCCCCCAAAGTCGAATGCGAGGATGAAAAAGTTGATGCAAGTTGGACTAACCAGCTACATACAAGTATTGACATTAAGAGTGAACCCACTCCCCAGACGGATGAGTCAGAACTCAGGTTGGGACGAGGAGGAGCAGAACACGATTTGGAGAATGATATTCGTGATTTTGTCCTAATAACAGCGCGAGTGAAGAGAGAGAACATGAGCACTCCACTTCCCGACGAATGTAATGAAAATTTGCTTGACCTATCACTCACGAATATTGAAATTAAGAGTGAACCCCCTGCCCAAACAAACGAAGCGGAATCCAAGGTGGGAAAAGCAAAAAGAGAACTCGATTTGGACGTTAATTATCGAGAAAGTGTCTCGATGGCAGAGCGAGTAAAGATAGAAAACATTGGGACTCCCCATCCCGACGAATGTGATGAAAGTTTGGCTGACCAGTTACATTCGGAAATCGAAATTGAGAGTGAGCCATCTCTCCAAATGGGTAAGTCTGAAGTTAGGTTGTATAATGAGGACGGAGAGCTCGATTCGGAGGTTGATTTTCGTGCTTTCGTCCCGAAGATAACGTCAGTGAAAAGAGGGAGCATCGGCACTACCTATCTCGGACAGGCCGAAGAGAACGTAGGCAAGAGAACGAGAACCCTTGCAAACGGTGAAAAAAGGAACGCTCGACACATACATGTAAATATGAGTACAGTATCAATGAgagattcgaaaaaaatgaatgccaAACCATCCATATGCAATGTTTGCGCTGCATCTTTTACTACGAAAACCTCATTGGCGCGACATATTCAAATAAATAGTGGCGAAAAACCAGTCacttgcagtcattgctcctcctcttCCAGTAGTAAATACAATATAAAGCAACACATGCGAACGCGcactggcgagaaaccattcagttgcagtcattgcacggcatgctttGCTCACAAACATTCTTTAACGGAACATGTTCGCACGCATACTGGTCAGATatcattcagttgcagtcattgcccCTCCGCTTTCAGTACGAAACAAAATCTCAAGGTACAtatgcgaacgcacactggcgagaaaccattcatttgcagtcattgctcggcCTCTTTTGCTACGAAAAGTAACTTGACAGCACACATCcgaacgcatactggcgagaaaccattcaattgcagtcattgcacggcatgctttgctcaaaaacattctttaacggaacatgttcgaacgcatactggtgagaaaccattcagttgcagtcattgcacggcatgctttGCTCAAAAGTCTGCTTTAACTAAACATGTtcgaacgcatactggtgagaaatcattcagttgcagtcattgccgCTCCTCTTTCAGTACGAAACAAAATCTCAAGGTACATATGcgaacgcatactggcgagaaaccattcaattgcagtcattgctcctctTCTTTCGCTAGTAAAGACAATTTAAAGAAACACATGCGAGCGCAcactggcgagaaaccattcagttgcagtcattgcacggcatgctttGCTCACAAACATTCTTTAACGGCACATGTtcgaacgcatactggtgagaaaccattcagttgcagtcattgcgcggcgtgctttgctcGCAAATATTCTCTAAAGGCACATGTtcgcacgcatactggtgagaaaccttATAGTTGCAGTTATTGCACGGCATGCTTTGCTCAGAAAACTAATTTGATAATTCACATCCggacgcatactggtgagaaaccattcagttgccgTCATTGCTCGGCCTCTTTTGCTGAGAAAAGTAATTTGACAAAACACATCCGGACGCATACTggagagaaaccattcagttgcagtcattgcacggcatgctttGCTCACAAACAGTCTCGAACGGCACATGTCTccacgcatactggtgagaaactaTTCAGTTGTAGTCATTGTTCGGCGTCCTTCCGCGGGAATGTCACTTTAAAGAGACATTTGCGAATGCATACTGATGGAAAACTGTACTGA
Protein Sequence
MQAVPEASTSSESSGMSGNPSSHSVESNLEDSDNPRLASVEETQETFLSSIFDCPSALPPKIECEDEKVDASWTNQLRTSIDIKSEPTPQTDGSELRLGRGGAEHDLENDIRDFLLITERVKRENMSTPLPDECNENLLDVSLTNIEIKSEPPAQTNEAESKLGKAKRELDLDLNYRDSVSMAERVKIENIETPHPDECDESLADQLHTEIEIESEPPLQMGKSEVRLYNKDGELDSEVDFRAFVPKITSLKRESIGTTYLGQAEENVGKRTRTLANGEKRNARHIHVNMSTVSMRDSKKMNAKQSICNVCATSFTTKTSMARHIQIKSGEKLFSCSHCSSSFSMKHNLKVHMRMHTGEKPFSCSHCTACFAHEHSLTEHVRTHTEGISFSCSHCSSSFSMKHNLKVHMRTHTGEKPFSCSHCTACFAHEHSLTEHVRTHTGEKPFSCSRCSSSFGRKNSLERHLRTHTGEKSFSCSHCSASFAEKSNLTKHIRTHTGEKPFNCSHCSASFAMKYNLTTHIRTHTGEKPFSCSHCTASFTQKDALTKHVRTHTGEKPFSCSHCSSSFITKQNLKVHMRTHTGKKPFSCSHCSASFAVKSNLTRHIRTHTGEKPFNCSQCSSSFTSKDMLKKHMRAHTGEKPFSCSHCTACFAQKHSLTAHVRTHTGEKPYSCSHCTASFAEKSNLTSHIRTHTGKKPFSCSHCSASFAVKNNLTRHIRTHTGEKPFNCSHCSSSFTSKDKLKKHMRAHTGEKPFSCSHCTVCSAQKNSLTAHVRTHTGEKSFSCSHCSASFAERSNLTKHIRTHTGEKPFSCSYCTACSARNQSLTAHVSTHTGEKLFSCSNCSSSFRREEHSAISTCEDSNQVNPPIDKSVKDPQGDVSRIYCTSPSMQAVPEASTSSESSGMSGNPSSHSVESRLEDSNNPQLASLEETKETFLSSIFDCPSALPPKVECEDEKVDASWTNQLHTSIDIKSEPTPQTDESELRLGRGGAEHDLENDIRDFVLITARVKRENMSTPLPDECNENLLDLSLTNIEIKSEPPAQTNEAESKVGKAKRELDLDVNYRESVSMAERVKIENIGTPHPDECDESLADQLHSEIEIESEPSLQMGKSEVRLYNEDGELDSEVDFRAFVPKITSVKRGSIGTTYLGQAEENVGKRTRTLANGEKRNARHIHVNMSTVSMRDSKKMNAKPSICNVCAASFTTKTSLARHIQINSGEKPVTCSHCSSSSSSKYNIKQHMRTRTGEKPFSCSHCTACFAHKHSLTEHVRTHTGQISFSCSHCPSAFSTKQNLKVHMRTHTGEKPFICSHCSASFATKSNLTAHIRTHTGEKPFNCSHCTACFAQKHSLTEHVRTHTGEKPFSCSHCTACFAQKSALTKHVRTHTGEKSFSCSHCRSSFSTKQNLKVHMRTHTGEKPFNCSHCSSSFASKDNLKKHMRAHTGEKPFSCSHCTACFAHKHSLTAHVRTHTGEKPFSCSHCAACFARKYSLKAHVRTHTGEKPYSCSYCTACFAQKTNLIIHIRTHTGEKPFSCRHCSASFAEKSNLTKHIRTHTGEKPFSCSHCTACFAHKQSRTAHVSTHTGEKLFSCSHCSASFRGNVTLKRHLRMHTDGKLY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-