Btab001552.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bemisia tabaci
Gene Symbol
-
Assembly
GCA_903994105.1
Location
NW:4596277-4628691[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 39 0.00017 0.0077 16.3 5.2 1 23 176 198 176 198 0.98
2 39 7.3e-05 0.0033 17.4 6.1 1 23 204 226 204 226 0.98
3 39 1.2e-05 0.00052 19.9 4.6 1 23 232 254 232 254 0.98
4 39 0.00025 0.011 15.8 4.0 1 23 260 282 260 282 0.99
5 39 0.00025 0.011 15.8 4.0 1 23 288 310 288 310 0.99
6 39 0.00029 0.013 15.5 7.3 1 23 316 338 316 338 0.98
7 39 9e-05 0.004 17.1 7.4 1 23 344 366 344 366 0.98
8 39 0.0034 0.15 12.2 3.9 1 23 372 394 372 394 0.98
9 39 1.9e-05 0.00084 19.3 5.7 1 23 400 422 400 422 0.98
10 39 2.8e-05 0.0012 18.7 2.5 1 23 428 450 428 450 0.98
11 39 2.2e-05 0.00098 19.1 4.6 1 23 456 478 456 478 0.98
12 39 0.0034 0.15 12.2 3.9 1 23 484 506 484 506 0.98
13 39 1.1e-05 0.00051 20.0 6.2 1 23 512 534 512 534 0.98
14 39 1.3e-05 0.00058 19.8 4.1 1 23 540 562 540 562 0.98
15 39 0.00031 0.014 15.4 4.7 1 23 568 590 568 590 0.99
16 39 5.9e-06 0.00026 20.9 3.2 1 23 596 618 596 618 0.98
17 39 7e-06 0.00032 20.6 4.5 1 23 624 646 624 646 0.99
18 39 4.6e-05 0.0021 18.0 3.1 1 23 652 674 652 674 0.98
19 39 0.00018 0.0079 16.2 4.9 1 23 680 702 680 702 0.98
20 39 7.5e-05 0.0034 17.4 0.9 1 23 908 930 908 930 0.98
21 39 3.5e-05 0.0016 18.4 7.4 1 23 936 958 936 958 0.98
22 39 0.0022 0.098 12.8 7.5 1 23 964 986 964 986 0.98
23 39 0.0044 0.2 11.8 6.1 1 23 992 1014 992 1014 0.98
24 39 6.4e-06 0.00029 20.8 3.7 1 23 1020 1042 1020 1042 0.98
25 39 1.2e-05 0.00055 19.9 4.4 1 23 1048 1070 1048 1070 0.98
26 39 2.8e-05 0.0013 18.7 4.5 1 23 1076 1098 1076 1098 0.98
27 39 0.0012 0.056 13.5 8.8 1 23 1104 1126 1104 1126 0.99
28 39 3.4e-06 0.00015 21.6 5.2 1 23 1132 1154 1132 1154 0.98
29 39 0.0019 0.086 13.0 5.9 1 23 1160 1182 1160 1182 0.98
30 39 1.5e-06 6.5e-05 22.8 3.1 1 23 1188 1210 1188 1210 0.99
31 39 0.00038 0.017 15.2 2.2 1 23 1216 1238 1216 1238 0.98
32 39 0.021 0.96 9.7 9.9 1 23 1244 1266 1244 1266 0.98
33 39 7.1e-05 0.0032 17.5 6.5 1 23 1272 1294 1272 1294 0.98
34 39 0.017 0.75 10.0 5.1 1 23 1300 1322 1300 1322 0.98
35 39 0.00012 0.0055 16.7 2.8 1 23 1328 1350 1328 1350 0.98
36 39 0.013 0.58 10.4 4.7 1 23 1356 1378 1356 1378 0.98
37 39 1.7e-05 0.00077 19.4 1.9 1 23 1384 1406 1384 1406 0.98
38 39 1.3e-05 0.00056 19.8 3.5 1 23 1412 1434 1412 1434 0.98
39 39 0.0061 0.27 11.4 3.2 1 23 1440 1462 1440 1462 0.98

Sequence Information

Coding Sequence
ATGCAGGCTGTACCTGAAGCGTGCACCAGCCCGGAGTCTAGCAGTATGTCTAGCAACCCATCTTCCCAATCCGTAGAAAGTCGCCTTGAAGATTCCAACAATACCCGACTTGCATCAGTAGAAGAGAACCAAGAGACCTCGGTCTCGTCCATCTTCGATTCTCCCTCCGCTCTTCCCCCCAAAATAGAATACGAGGATGAAACAGTTGCTGCAAGTTGGACTAACCAGCTACACACAAGTATTGACATTAAGAGTGAACCAACTCCTCAGACGGATGAGTCAGAACTCAGGTTGGGACGAGGAGGAGCAGAACACGATTTGGAGAATGATATTCGTGATTTTGTCCCCATAACAGCGCGAGTGAAGAGGGAGATCATGAGCTCTCCAATTCCCGACCAATGTAATGAAAATGCGCTGGACCTTTCACATACGAATATCGAATTTAAGCGGGAACCTTCTACCCAGACGAACGCATCGGAATCCGAGTTGGTCGAACATACTcgaacgcacactggtgagaaatCATTCAGTTGCAACcattgcacggcatgctttGCTCAGAAACGGTCTTTAACGGAACATGTTCGTACGCAcaccggtgagaaaccattcagttgcagtcattgctcggccttatttgttaaaaaaagtcaTTTGACAAGACACATGCGGACGCACACTgccgagaaaccattcagttgcagtcattgctcggcatgcttttctcagaaaaataatttgataattCACATCCGGACGCATACTGGAGAGAAACCATATAGTTGCAGTCATTGCGCAGCATACTTTGCTCACCAGTCTTCTTTAACGAAACATGTtcgaacgcatactggtgagaaaccatatAGTTGCAGTCATTGCGCAGCATACTTTGCTCACCAATCTTCTTTAACGAAACATGTtcgaacgcatactggtgagaaaccattcagttgcagtcattgcacagCATGCTTTGCTCGCAAACATTATTTAACGGCACATGTtcgaacgcatactggtgagaaaccattcagttgcagtcattgcacagCATGCTTTGCTCGCAAACATTATTTAACGGCACATATTCGCACGCATaatggtgagaaaccattcagttgcaacCATTGCATGGCATGCTTTGCTCAGAAACGGGCTTTAACGGACCATGTTCGCACGCAcaccggtgagaaaccattcagttgcagtcattgctcggcCTCATTTGTTAAGAAAAGTCATTTGACAACACACATCCggacgcatactggtgagaaaccattcagttgcagtcattgcacggcatTCTTCGCTCAAAAACAGTCTTTGACGGCACATATtcgcacgcatactggtgaaaaaccattcagttgcagtcattgcacagcatgctttcctcgcaaaaattCTTTAACGGCACATATTCGCACGCATaatggtgagaaaccattcagttgcaacCATTGCATGGCATGCTTTGCTCAGAAACGGGCTTTAACGGACCATGTTCGCACGCAcaccggtgagaaaccattcagttgcagtcattgctcggcCTCATTTGTTAAGAAAAGTCATTTGACAACACACATGCGGACGCACACTgccgagaaaccattcagttgcagttattgcacggcatgcttttctcggaaaaatactTTGATAAATCACATCCGGACGCATACTGGAGAGAAACCATatagttgcagtcattgcacagCATACTTTGCTCACCTATCCTCTTTAACGAAACATGTtcgaacgcatactggtgagaaaccattcagttgcagtcattgcacggcaAGCTTTTCTCAGAAACAGTATTTGACGGCACACATTCGCACGCATACTGGAGAGAAACCATatagttgcagtcattgctcctcctcGTTCCGTAgtaaacaaaatttgaatgtacacatgcgaacgcacaccggagagaaaccattcagttgcagtcattgttCCTCCCAATTCAGTGTTGAAGCGAACTTGAAGAGACATATGCGGACGCACACTGGCGataaaccattcagttgcaatcATTGTACGGCATGCTTTGCTCAGAAACAGTCTTTAACGGAACATGTTCGCACGCATACTGGTTCGAAACCGTTCAGTCTTTTCCACCAAACTGTGAAAGAGGATCCCCAGGGAGACTTGTCGAGGATTTCTTGCACGAGCCCTTCAATGCAGGCTGCACCTGAAGAGTGCACCAGCCCGGAGTCTAGCGGTATGTCTGGCAACCCATCTTCCCAATCTGTAGAAAGTCGCCTTGAAGATTCCAACAATACCCGACTTGCATCAGTAGAAGAGAACCAAGAGACCTCGGTCTCGTCCATCTTCGATTCTCCCTCCGCTCTTCCCCCCAAAATAGAATGCGAGGATGAAACAGTTAATGCAAGTTGGACTAACCAGCTACACACAAGTATTGATATTAAGAGTGAACTCACTCCCCAGACGGATGAGTCAGAACTCAAGTTGGGACGAGGAGGAGCAGAACACGATTTGGAGAATGATATTCGTGATTTTGTCACCGTTACAGCGCGAGTGAAGAGGGAGATCATGAGCTCTCCACTTCCCGACCAATGTAATGAAAATTGGCTTGACCTTTCACAAACGAATATCGAATTTAAGAGGGAACCCTCTACCCAGACAAACGAATCGGAATCCGAGTCGGTCGAACATATTCGAACGCAcgctggtgagaaaccattcacaTGCGGCGAGTGTACGAGCctcttttcttctaaaagcgCTTTGACTACACACATGCAAACGCACCCTgccgagaaaccattcagttgcagtcattgctcctccCAATTCAGTACAAAAGCCCATTTGAAGAGACACATGCggacgcatactggtgagaaaccattcagttgcagtcattgcactgCATGCTTCGCTCACAAACAGTATTTAACAGAACATGTtcgcacgcatactggtgagaaaccattcagttgcagtcattgcacggcatgcttCGCTCGGAAACGTCGTTTAACGGAACATGTACGCAGGCATACTGGGGAggaaccattcagttgcagtcattgctcctccCAATTCAGTAcaaaaggtaatttggcaagacacatgcgaacgcatactggtgagaaaccattcagttgcaacCATTGCACGGCCTCATTTGCTCAGAAAAATCATTTGACAATACACATCCggacgcatactggtgagaacccattcagttgcagtcattgcactgCATGCTTCGCTCAAAAACAGTCTTTGACGGCACACATtcgcacgcatactggtgaAAAACCATatagttgcagtcattgcacagCATGCTTTGCTCGCAAAAATTGTTTAACGAAACATGTtcgaacgcatactggtgagaaaccattcagttgcaacCATTGTACGGCCTCATTTGCTCAGAAAAGTCATTTGACAACACACATCCGGACGCATACTggagagaaaccattcagttgcagtcattgctcggcctcatttcttatgaaaagtCATTTGACAACacacatgcgaacgcacactgCCGTGAAACCATATAGTTGCAGTTATTGCACGGCATGCTTTTCTCAGAAATATAATTTGATAATTCACATCCggacgcatactggtgagaaaccattcagttgcagtcattgctcctccCAATTCAGTATAGAAGGCAATTTGAAAATacacatgcgaacgcacactggcgaaaaaccattcagttgcagtcattgtaCGGCATGCTTTACTCGCAAACATTCTTTATTAGAACATGTTCatacgcatactggtgagaaaccattcagttgcagtcattgcggGGCATGCTTTGctcacaaaaaatatttaaaggcaCATGCtcgcacgcatactggtgaaaaaccatttagttgcagtcattgcacggctAGCTTTGCTTGCAAACAGTATTTAACGGCACATCTtcgcacgcatactggtgagaaaccttTCAGTTGCAGTCAATGCACGGCATGCTTTGCTCGCAAACAGTCTTTAATACAACATGTTCGTacacatactggtgagaaaccattcagttgcagtcaatGCACGGCATGCTTTGCTCTCAAAAAAACTTTAACGGCACATCTTCacacgcatactggtgagaaaccattcagttgcagtcaatGCACGGCCTCATTTGCTCAGAAAAGTACTTTGACATCACACACCCGGACGCATACCGGAGAGAAACCATTCaattgcagtcattgctcctcctcGTTCCGTAGTAAACCAAATTTGAATGTacacatgcgaacgcacaccggcgagaaaccattcagttgcagttatTGTACGTCATGCTTTGCTTACAAGCAGTCTTTATTGACACATATTggcacgcatactggtgagtAA
Protein Sequence
MQAVPEACTSPESSSMSSNPSSQSVESRLEDSNNTRLASVEENQETSVSSIFDSPSALPPKIEYEDETVAASWTNQLHTSIDIKSEPTPQTDESELRLGRGGAEHDLENDIRDFVPITARVKREIMSSPIPDQCNENALDLSHTNIEFKREPSTQTNASESELVEHTRTHTGEKSFSCNHCTACFAQKRSLTEHVRTHTGEKPFSCSHCSALFVKKSHLTRHMRTHTAEKPFSCSHCSACFSQKNNLIIHIRTHTGEKPYSCSHCAAYFAHQSSLTKHVRTHTGEKPYSCSHCAAYFAHQSSLTKHVRTHTGEKPFSCSHCTACFARKHYLTAHVRTHTGEKPFSCSHCTACFARKHYLTAHIRTHNGEKPFSCNHCMACFAQKRALTDHVRTHTGEKPFSCSHCSASFVKKSHLTTHIRTHTGEKPFSCSHCTAFFAQKQSLTAHIRTHTGEKPFSCSHCTACFPRKNSLTAHIRTHNGEKPFSCNHCMACFAQKRALTDHVRTHTGEKPFSCSHCSASFVKKSHLTTHMRTHTAEKPFSCSYCTACFSRKNTLINHIRTHTGEKPYSCSHCTAYFAHLSSLTKHVRTHTGEKPFSCSHCTASFSQKQYLTAHIRTHTGEKPYSCSHCSSSFRSKQNLNVHMRTHTGEKPFSCSHCSSQFSVEANLKRHMRTHTGDKPFSCNHCTACFAQKQSLTEHVRTHTGSKPFSLFHQTVKEDPQGDLSRISCTSPSMQAAPEECTSPESSGMSGNPSSQSVESRLEDSNNTRLASVEENQETSVSSIFDSPSALPPKIECEDETVNASWTNQLHTSIDIKSELTPQTDESELKLGRGGAEHDLENDIRDFVTVTARVKREIMSSPLPDQCNENWLDLSQTNIEFKREPSTQTNESESESVEHIRTHAGEKPFTCGECTSLFSSKSALTTHMQTHPAEKPFSCSHCSSQFSTKAHLKRHMRTHTGEKPFSCSHCTACFAHKQYLTEHVRTHTGEKPFSCSHCTACFARKRRLTEHVRRHTGEEPFSCSHCSSQFSTKGNLARHMRTHTGEKPFSCNHCTASFAQKNHLTIHIRTHTGENPFSCSHCTACFAQKQSLTAHIRTHTGEKPYSCSHCTACFARKNCLTKHVRTHTGEKPFSCNHCTASFAQKSHLTTHIRTHTGEKPFSCSHCSASFLMKSHLTTHMRTHTAVKPYSCSYCTACFSQKYNLIIHIRTHTGEKPFSCSHCSSQFSIEGNLKIHMRTHTGEKPFSCSHCTACFTRKHSLLEHVHTHTGEKPFSCSHCGACFAHKKYLKAHARTHTGEKPFSCSHCTASFACKQYLTAHLRTHTGEKPFSCSQCTACFARKQSLIQHVRTHTGEKPFSCSQCTACFALKKTLTAHLHTHTGEKPFSCSQCTASFAQKSTLTSHTRTHTGEKPFNCSHCSSSFRSKPNLNVHMRTHTGEKPFSCSYCTSCFAYKQSLLTHIGTHTGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-