Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.017 13 5.5 1.6 15 39 119 140 108 148 0.74

2 6 0.0034 2.7 7.7 0.5 15 39 147 168 143 171 0.77

3 6 0.0041 3.2 7.4 1.0 6 38 167 195 163 200 0.74

4 6 0.0039 3.1 7.5 2.4 8 31 197 219 192 223 0.76

5 6 4.8e-05 0.038 13.6 1.0 2 39 219 252 218 255 0.84

6 6 0.002 1.6 8.5 1.3 3 39 248 280 246 287 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.017	13	5.5	1.6	15	39	119	140	108	148	0.74
2	6	0.0034	2.7	7.7	0.5	15	39	147	168	143	171	0.77
3	6	0.0041	3.2	7.4	1.0	6	38	167	195	163	200	0.74
4	6	0.0039	3.1	7.5	2.4	8	31	197	219	192	223	0.76
5	6	4.8e-05	0.038	13.6	1.0	2	39	219	252	218	255	0.84
6	6	0.002	1.6	8.5	1.3	3	39	248	280	246	287	0.80

Coding Sequence: ATGGAAACTATCGATCCAAACCAGAACGGAATCATTGTCGTAGAAAATTCAACAGGAGAAGAGCTTAATGTCCTAACGATGAGTGAATTACAGCCAGTCGCCAGAACGGTTGTCATTGAAACTACTAATGTGGCTGAAGAAACCCCAAACCATCGAATCATTAAGCTTGAAAGAACTGATAAAGAATGCCAGACTGATCCTGATTTATATTTGAACATGATGGCAAAGAAGATGGATATTGCAATGCGAAATCCTTCTTTAGAGCAGGGAGGTCCTATGAACGGGAAGAATAATGAAACCTACAACTATGCATTGTGGAATGCAGCTCAGCAGCACTATAATCAACAGTTGAACAAGAGGTTTGCGTGCACTCTTTGTGATAAAACATTCACGCAACAAGGGAATTTGAAGACCCACATGATGTCTCATTATTGTGAGAGAAATTTCAGTTGTCCATACTGCGAGAAAACTTTTGTGCAGAAAGGCAACTTAAAAACGCACATCATGCTCCACACGAAAGAAAAAGTGCATGCCTGTCAATTTTGTGACAAAGTGTTTGTTCAAAAAGGTAATCTACAAAGCCACATCCTCACTCAtacgaaagagaaaaaatttcactgtttaATCTGTACCAAGTCATTCACGCAGAAAGGCAATttgaaaactcattttcaaattcacaCTGGTGTGAAAAGGTTTCAGTGCCCCTATTGTGAAAAAGCTTTCAGCCAAAAGGGTAATTTGAAAACCCATGTTGCCAGGCACACtggtgagaaaaaatttcagtgtCCGATTTGTGATAAAATGTTTgtacagaaaaataatttagataAACATATGATGAACCATTCAATTCACAAAAATATTGATGAGCAGTTCAATAGGAGTTGGCAGCAGCCACCTCTGCCCCACCAGCCCCTCCAGCCCCCACAGCACCCCCAGCCCCTCATAGTCGTTAGCCAACCAAATCCAATGGAAATTCCCAAATCTGAGCCTACAAGTGTAGACACGTTTTACAGTTATGTTGGTAAATTATACAACCCTAATCCACAAATACACATGGGTAATTAA
Protein Sequence: METIDPNQNGIIVVENSTGEELNVLTMSELQPVARTVVIETTNVAEETPNHRIIKLERTDKECQTDPDLYLNMMAKKMDIAMRNPSLEQGGPMNGKNNETYNYALWNAAQQHYNQQLNKRFACTLCDKTFTQQGNLKTHMMSHYCERNFSCPYCEKTFVQKGNLKTHIMLHTKEKVHACQFCDKVFVQKGNLQSHILTHTKEKKFHCLICTKSFTQKGNLKTHFQIHTGVKRFQCPYCEKAFSQKGNLKTHVARHTGEKKFQCPICDKMFVQKNNLDKHMMNHSIHKNIDEQFNRSWQQPPLPHQPLQPPQHPQPLIVVSQPNPMEIPKSEPTSVDTFYSYVGKLYNPNPQIHMGN

Sequence clustering based on sequence similarity using MMseqs2