Btab000893.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- bab1
- Assembly
- GCA_903994105.1
- Location
- NW:999844-1012288[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00052 0.71 9.2 0.0 23 38 236 251 218 254 0.83 2 4 3.6e-10 4.9e-07 29.0 0.1 3 39 267 302 265 308 0.88 3 4 1.7e-05 0.023 14.0 0.0 1 39 317 354 317 357 0.91 4 4 1.2e-12 1.6e-09 36.9 0.0 5 40 380 415 379 418 0.95
Sequence Information
- Coding Sequence
- ATGGCGGCAAGTCAACATTACTTTATGAAATGGAATAATTACCAGTCGCACATCTCGAATATATTTCTTCAACTTTATCAGACAGAAACTCTAGTGGATGTCACGGTTTGTGCTGATGGCGTCAAACTCCAGGCCCATCGAGTCATTCTATCAGCTTGCAGTCCATACTTTCAGgaTATTCTTGCAGATGCTGGACCCAATCCAATATTACTTCTGCATGATATCAGTTCAAGCGACATGAAATccattttagattttatttACCGAGGTGAACTCAATGTGGCATCTCATCGCACATCAAGTCTTCTGAGAGCAGCAAATAGTCTGCAAATATCTGGATTAATGGAGGTTAGCAAGCATTTACCAGATCTTGAAGCAGAGAAGGAGAACGTCAGTAAACCTAATGGGAACAACCAAGGAGAAAATTTAGATAATTTCTTCGATATGAATGCTATGAAAACTGAAGACCAAGAAGCTGACACATCTACTCAAATGGAAGTGGTAGAAATTTACACAGACGTAAACGAACAATCAAACTTGTCCAACCCGCCTCCAGAAGGCGATGTCCAGATAGTCATCAACACTGATTCAGACATGATCCGTGAGGCGAAAAAGAAACGTGCAGAAACAAAGAAAGAGTATTCGGAACAACTCCTGGCCGAAGCACTCACCGAACTCCATCAAGGCAAGACATTGGCTGATGTATGTAGTCGTTATGCTATCCCACGGTCCACACTTTACTCAAGAGCCAGAGTAATGGGGATTGCACCAACCATCGAACGGAAAGAGTATTCGGCAGAGAACGTGGCAGCTGCCATTCAAGCAGTTGCAGAGGGAGCCAGTCTGAAGCACGCTTCTGAAACGTGGGGAATCCCCAAGACTGTTCTGTGGAGGAAGGTGCAAAGAGACGGCGGCAAAGCCTCTCTGAGGAGACGGATGCGGAAATATACCCCTGCCGTGATGGATCTAGCTTGCAATGCATTATTGAGTGGTCACAGTATTACCAGAGTAGCCAATCAGTTCAAGATACCTACTTCAACTTTATTCAGGGAAAAGCAAAGACTAGTGAAAGAGGGCAAACTACCAGCTCGTTCCATTAATACCAAAAAAACGCATAGTCTAATACAAAAAATAAGACTAGATCAAGCAGTAGCCGCTTGTCAAGATGGTAAAATGTCTCAAGCTCTAGCATCTCAAACATTCCAGGTTCCAAAAACAACGATTTGGAGGCGATTGCAAAGATCGGCTGGTAATAATGGTAGTAGCAAACAAGAGAGAAGAAGGAGGAACCAAGTTGCAATGCTGAAAGCAGATTTTCTCGATGGAAGCTCAGATGATGTTGCCACAGCAATCACCTCGGACACAGGAGAGGAGTTCACCTTCAGTGAGGTAGTGCCCATGACCTACCTGAATGTAGGAGAGGGTGGTGAAGTGAATGAACACTCATTGATAATCCTGACCCCTTCAAATGAAACATTAGATCTACAGCAGAATGTCGTCGTGGAGGaagaaatcacggaaatttccgCAGAAGATGCCCAAGCAGAGGAAGATGAGCAAAACCAAGATCAAGAAGCAACCGTCATGGATCACTCAATTCTGGGAATAGACTGCAGTTGA
- Protein Sequence
- MAASQHYFMKWNNYQSHISNIFLQLYQTETLVDVTVCADGVKLQAHRVILSACSPYFQDILADAGPNPILLLHDISSSDMKSILDFIYRGELNVASHRTSSLLRAANSLQISGLMEVSKHLPDLEAEKENVSKPNGNNQGENLDNFFDMNAMKTEDQEADTSTQMEVVEIYTDVNEQSNLSNPPPEGDVQIVINTDSDMIREAKKKRAETKKEYSEQLLAEALTELHQGKTLADVCSRYAIPRSTLYSRARVMGIAPTIERKEYSAENVAAAIQAVAEGASLKHASETWGIPKTVLWRKVQRDGGKASLRRRMRKYTPAVMDLACNALLSGHSITRVANQFKIPTSTLFREKQRLVKEGKLPARSINTKKTHSLIQKIRLDQAVAACQDGKMSQALASQTFQVPKTTIWRRLQRSAGNNGSSKQERRRRNQVAMLKADFLDGSSDDVATAITSDTGEEFTFSEVVPMTYLNVGEGGEVNEHSLIILTPSNETLDLQQNVVVEEEITEISAEDAQAEEDEQNQDQEATVMDHSILGIDCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00201817;
- 90% Identity
- iTF_00201817;
- 80% Identity
- iTF_00201817;