Basic Information

Gene Symbol
pnr
Assembly
GCA_010883055.1
Location
NC:38271016-38326171[+]

Transcription Factor Domain

TF Family
zf-GATA
Domain
zf-GATA domain
PFAM
PF00320
TF Group
Zinc-Coordinating Group
Description
This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.3e-17 4.6e-14 51.4 2.6 1 35 478 511 478 512 0.97
2 2 9.2e-19 1.8e-15 55.8 5.4 1 35 537 570 537 571 0.97

Sequence Information

Coding Sequence
ATGAAGGAGACTCTCTCGAAACAGGATATAAAATTAGAGTGGGAGGACCGACGTTCATCCGGAAACAGTTCTCCTCAGGTGACGAGAATGTCCGAGGAACAAACAACTGGAAGTCCACAAAGCGTCATCACGACTCGAAGGTATACCCGGACGATCACAGCCACAGGCCACATCACCGAGACGATAGCTAGTCAAGAACCACATTCTCCGGAAACAAATTCAAACATGAAACAGGTTATCCAGCAGCAGAAAATACACGTTAAGGATGAAAATTCTGATCAGCGAAGATATCAAGAGGAGATGCAACATCATGCAGACCATGTACCAGTTTCTCCTCATGGTAGTCCCAATCAGCAACACGTGGGAGATCAGCATCCTGTTATTTTCTCAATCAGCAACGGACAGGAACTCCAGGTTGAAGCTGTTGAACCTTCTGAAGCAAGGAAAGAACCACCTAGGTACGAATCTGCAATTCCGGAGAGATCAGAAAGTGAGAGGATCTTCCTTTTCTCCAAGGATCCAGAAATGAGAAGAGATAGTCACGTGATTGCTCTCCAAGTTCAGGAACATCGCAGACATCAGGTCCATCATCATAGAATCAGTCCTCACCAGAATAATGAACAGGGAAGATATCAGCATTCACCTGTCAATGCTTCCAATGAGGATTATGATTCAACTGTTATGGTTGTTCAACCTGGTGGTGTTCAACTGACAAACTCATCAGCTACTTATTCGCCACCGACTGAATTAAGAACTAGCCAACATCAACAAATCATCAATGCTGCCTACGCTGAAGCGGCAAACGGCACTGTCAAGTATGATACAGAAACTACTACTGCTGCTGATAGTATAAAAGTCTCTAGTACTTATACAACCCTAGAAACTGCAGCTCTTGCACCTCCTCAAGCAGTTCCTTATAATCAGTACCTTGTAGCTGCTGATGCTTTCCAACAACCTGGTGGATATAGTTACACCAAATCCGGAGAATTTTTCTTCTTGCCAACTAGTAATCCGTCCGGAATAAGAGCTGAGGTGGAACCGCCAGCTTATATAAAAAGTGATCCAACCCTGACATCGTCATCGCTCCTCAATTCTCGAACTGTAGCTCTTCAGTATCAACCAGGTTCTCCAGGTTCACAAATGGACCTTTACAGTACAGGTGGCACGGTTTCTTATCCATATCCAAAATCTGTAAACGAACACTATTGGTCCAGTGGACCAGGATCGCCTCCAGGACTGGAATGTGGACAAGGTTACCCAGGTGTAACGATATCACCTAGTGATGCTGGAAGTGTCAACACGGGAGCTTATTCTGGTGGTTCCTACATCACCTCTGGACCAAATGGACCACCATCACCATGGGGGATACATCTTCCTAGTTCTATGGACTCTGGGTTGGACGAACAAGtcttaaattcagaaatgaaGGAATGTGTCAACTGTGGGGTCATGGGAACACCACTATGGAGACGAGATGTCACTGGAAATTATCTCTGCAATGCCTGTGGTCTTTATAACAAAACAAATGGAGTTAGCAGACCACCTATTCGTTGTGCAAAACCAAAACAGGCCATCACACCGggcgGTGGAAGAAGACCAGGAGTAAGATGTGCAAATTGCGGGACAAGCAACACAACCCTCTGGCGAAGAAACAATAACGGAGAACCAGTTTGCAATGCCTGTGGTCTTTACTTCAAACTACACAGTGTGAATCGACCAATGAGTATGAAGAAAGACGGAATTCAGACGAGGAAAAGGAAACCGAAAAACCATGCCAGTATGGGATCAGGCCTTGGCGGACCAAGTGGTATACACAAGACCGAGATTAAGTCCAGCTTACTCGGTGAGTCCTCGtGGACTCGAAGCTGCAGTTGA
Protein Sequence
MKETLSKQDIKLEWEDRRSSGNSSPQVTRMSEEQTTGSPQSVITTRRYTRTITATGHITETIASQEPHSPETNSNMKQVIQQQKIHVKDENSDQRRYQEEMQHHADHVPVSPHGSPNQQHVGDQHPVIFSISNGQELQVEAVEPSEARKEPPRYESAIPERSESERIFLFSKDPEMRRDSHVIALQVQEHRRHQVHHHRISPHQNNEQGRYQHSPVNASNEDYDSTVMVVQPGGVQLTNSSATYSPPTELRTSQHQQIINAAYAEAANGTVKYDTETTTAADSIKVSSTYTTLETAALAPPQAVPYNQYLVAADAFQQPGGYSYTKSGEFFFLPTSNPSGIRAEVEPPAYIKSDPTLTSSSLLNSRTVALQYQPGSPGSQMDLYSTGGTVSYPYPKSVNEHYWSSGPGSPPGLECGQGYPGVTISPSDAGSVNTGAYSGGSYITSGPNGPPSPWGIHLPSSMDSGLDEQVLNSEMKECVNCGVMGTPLWRRDVTGNYLCNACGLYNKTNGVSRPPIRCAKPKQAITPGGGRRPGVRCANCGTSNTTLWRRNNNGEPVCNACGLYFKLHSVNRPMSMKKDGIQTRKRKPKNHASMGSGLGGPSGIHKTEIKSSLLGESSWTRSCS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01393163;
90% Identity
iTF_00064853;
80% Identity
-