Btre002975.1
Basic Information
- Insect
- Belonocnema treatae
- Gene Symbol
- -
- Assembly
- GCA_010883055.1
- Location
- NC:143116529-143197544[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.29 11 6.3 0.1 6 21 255 270 252 271 0.90 2 13 0.0079 0.31 11.3 0.5 1 19 277 295 277 300 0.95 3 13 0.00016 0.0062 16.6 2.8 2 23 313 335 312 335 0.96 4 13 0.32 12 6.2 0.3 3 23 348 368 348 368 0.94 5 13 2e-07 7.8e-06 25.7 1.0 3 23 407 427 405 427 0.97 6 13 0.046 1.8 8.8 1.3 1 23 432 455 432 455 0.94 7 13 0.069 2.7 8.3 0.1 2 23 522 543 521 543 0.96 8 13 0.00051 0.02 15.0 0.9 1 23 552 574 552 574 0.93 9 13 0.002 0.078 13.1 0.2 1 23 582 604 582 604 0.96 10 13 1 41 4.6 6.2 1 22 610 631 610 631 0.94 11 13 5e-05 0.002 18.2 1.6 1 23 659 681 659 681 0.99 12 13 0.2 7.6 6.9 0.0 1 23 746 769 746 769 0.97 13 13 2.8e-06 0.00011 22.1 4.4 1 23 774 797 774 797 0.96
Sequence Information
- Coding Sequence
- atggCCACGGTCCATGCATGGGAAAATGCATGTAGACTCTGTTCTGAAGAGAAAACTGAAATGCTATCGATATTTGGTAATGAAGGCATTCAACGTAAAGTTGCACAAAAGCTCAGAGCATGTTTGCCTGTCCTCGTTTACAAGACAGATCCCTTGCCAAAACAAATTTGTCAATTCTGCGCCGCTCGGCTTGACGATGCTTATGAATTTCGGGAATATTGTCTAGGCGTTTACAAAGCCATGCACGCCAAACTCTTAATGTTCAAGGATTTGGAGGCGGTACATATTTTCCTTGATGCGATGCAGAATTCATCAGATCCTTGCCAAGTACAGCTCTGCAAACAAAAATGCAGAGCGCCTCCCCCTCTAGTTCCATTGCCTGCAATACTGTCAATAGAAAATACGACACCTTCAGTCAAAATGCCTGAGATTGTTCAATCGAATCACTCAAGGGAGCCTCTGCCAGAACTACCTTGCGAAGTACAAATTAAGGAAGAACCATCAGAGACAGTTCTTAGAACCTCTACTGATACGGATACCTCAAACGAaagaatttttgcaaatttaagcTTAGAAATACCATATGTTCTTGCGAATGATCACAGAAAATCTTATGACGAAAACGAAGAGTCAAATCTTTACAAAGGAGAAAAGCCGCGAACTAGTATATTGGAGCAAGTACTTAAGGGCACTATAAGTTTGAACGACAGCCAAGAACTAAAAAGCCAATATGGACTTAGTTCTAAATGGTGGTGTGCTCCCTGTAATAATTACTACAGaacAAAAGAAAGTCTCATAAAACACATGCAAGTGTTTTGTCCGCGAAGGTACACGTGTAGAAAGTGTTCACGTGTCTTTTATACTGTGGAGGATTTAGCGAAGCACGATGGGACCGATCACCTGAAAATCACGTTAGATTTTGATGAATCAGTTACCGAGTGCCATCAATGCGATCGTGAATTCGTTAGTTGGGAAATGCTGAGGCATCACAGACTTCGTGACCATGTTGCAAAGGATATTGAGATTGGTACGAATACTTGGTGTCCACCTTGTAACAGATTCTTCCCCAGTATAGAATCGTACCAAAATCATAAACAACTCCATCAATTGGATACGATGACTAAGTTGCCAATAAGTTCCTTACCCTGCATTTCTGAAACAGAATCTACTAGAGAATTAAGAAAAGAGAACTTCAACGGGGGCGCAAAGTCTTTAGCTTGTCCTACATGTGGCAAGGTATGTACTCAACAAAGCGCGTTATCAAATCACATGCGTACTCACGAGCCAAAGAGACATAAATGCGATATTTGCGGCCGATTTTTTGGTCTTTTTATAAGACTAGCAACGCATAAGATGACTGAACACAATCAAGTAATGACGCCTGTCATGAAAAGTGTAGAACAAGAAGAAGCTTTAAATGCTGAGAGAGAAGCAAGGGAAGCAAGAACACGAGGCAAAACCAGATCTTTTACCGAGATGGTGGAAGAAAAGGATTATCTTATCAAAGATAGGCCAATAAAGCGAAGTGCTTTTTTTGATTCGAACACGTCGAAAAACGCCGTACGTTGTGGTATTTGTCTGCAGTGGTTTAGCAATCGCACAGAAATGATTGCTCACTTACAAACGCACTCAGATTCAGATTTACCTAATAACTTTCGTTGTGGTTTATGTAcaaaaacttttgaagaaaaatggcAATTAACAAGGCATGAAGCTTTTCATGAACGCACGAGCATAACGACTTATATTTGCACAGCTTGTAACGAAGTTTTTGCAGACAAACCCTCTTACAAAACTCATCAAGGGAAGCACTCTGTTGACAAAACGTATCATTGTGCGAAAtgcaataagattttttttaaggaattctcTTTGCTAACGCATCATTGTACTGGAAAACCCATATTTAGTCAGAAAAACGCTATTCCGAAGATATTGCAAAGGAGTGCATCCTTGTTTAGCGCTAATAAGAAATACAAATGCTCGAAGTGTAACGCAACTTTTGCCAATTCGCAATCTAGGAATTCGCATATGAGAGTTCATACTGAAGCACATTCTATGatgaaagttaaaaaaaaagaattgaaaaaaaaacttgaagtaGAGGCGATGCCAAAACTTAGTCCCGAAACTTCAACTAGTTCTTCAGTGCCTCATATTGAAGAGAAGGCTGACGCTGCTAAAGCGATTATGGTAGCACCAGTTAAACGAACATTGATTAGAACTGCTGAAGGttaTCGCTGTGGCGTATGTCAGTCCCCATTCATCCTTCGAGATTTAGCTGTAGCGCATCTTCGCTCTGCTCATCCAGTAATGCCTTATCAGTGTCCTTATTGTAAAAAGCGATTTACAACACAGTACATGTTTACACATCATATAAAAGCTGATCATCCTGATGAAacggaaaattga
- Protein Sequence
- MATVHAWENACRLCSEEKTEMLSIFGNEGIQRKVAQKLRACLPVLVYKTDPLPKQICQFCAARLDDAYEFREYCLGVYKAMHAKLLMFKDLEAVHIFLDAMQNSSDPCQVQLCKQKCRAPPPLVPLPAILSIENTTPSVKMPEIVQSNHSREPLPELPCEVQIKEEPSETVLRTSTDTDTSNERIFANLSLEIPYVLANDHRKSYDENEESNLYKGEKPRTSILEQVLKGTISLNDSQELKSQYGLSSKWWCAPCNNYYRTKESLIKHMQVFCPRRYTCRKCSRVFYTVEDLAKHDGTDHLKITLDFDESVTECHQCDREFVSWEMLRHHRLRDHVAKDIEIGTNTWCPPCNRFFPSIESYQNHKQLHQLDTMTKLPISSLPCISETESTRELRKENFNGGAKSLACPTCGKVCTQQSALSNHMRTHEPKRHKCDICGRFFGLFIRLATHKMTEHNQVMTPVMKSVEQEEALNAEREAREARTRGKTRSFTEMVEEKDYLIKDRPIKRSAFFDSNTSKNAVRCGICLQWFSNRTEMIAHLQTHSDSDLPNNFRCGLCTKTFEEKWQLTRHEAFHERTSITTYICTACNEVFADKPSYKTHQGKHSVDKTYHCAKCNKIFFKEFSLLTHHCTGKPIFSQKNAIPKILQRSASLFSANKKYKCSKCNATFANSQSRNSHMRVHTEAHSMMKVKKKELKKKLEVEAMPKLSPETSTSSSVPHIEEKADAAKAIMVAPVKRTLIRTAEGYRCGVCQSPFILRDLAVAHLRSAHPVMPYQCPYCKKRFTTQYMFTHHIKADHPDETEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -