Btre006958.1
Basic Information
- Insect
- Belonocnema treatae
- Gene Symbol
- -
- Assembly
- GCA_010883055.1
- Location
- NC:114361923-114397499[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.3 49 4.3 0.2 2 23 156 178 155 178 0.90 2 15 0.00099 0.039 14.1 0.1 2 23 183 205 182 205 0.94 3 15 0.028 1.1 9.5 1.2 2 23 395 416 394 416 0.97 4 15 0.82 32 4.9 0.2 2 23 422 444 421 444 0.95 5 15 0.00023 0.0088 16.1 0.4 1 21 454 474 454 475 0.94 6 15 8.1e-05 0.0032 17.5 5.1 2 23 485 506 484 506 0.98 7 15 0.0033 0.13 12.4 1.1 1 23 519 541 519 541 0.98 8 15 0.00016 0.0063 16.6 0.4 1 23 549 572 549 572 0.97 9 15 6.8e-05 0.0026 17.8 2.8 1 23 578 600 578 600 0.95 10 15 0.0045 0.18 12.0 2.3 1 23 603 626 603 626 0.95 11 15 0.025 0.98 9.7 1.0 1 23 645 667 645 667 0.96 12 15 0.00023 0.009 16.1 2.8 1 23 673 695 673 695 0.98 13 15 1.2e-06 4.9e-05 23.2 0.7 1 23 700 722 700 722 0.98 14 15 0.00017 0.0065 16.5 6.8 1 23 730 752 730 752 0.98 15 15 6.6e-05 0.0026 17.8 0.8 1 23 758 780 758 780 0.98
Sequence Information
- Coding Sequence
- ATGGATGTTGTATTACTAGATTCTCCGTCCCCTGACTGTATTCAAGTCCAGTCAGACAAAAAagcTGGTTTGAAACCAACCATGAATGCGCAAAGCACGGACGAAATATGTCGACTGTGTGGCGAAATCTGCGAAAATGGCATATCAATATTCGATAACAAATCGTCAGTTGCTGAGAAAATTAGCAGATGTCTACCAATAATtGTACGTGCTAATGACGAATTGCCGTCACACGTCTGTAAGCGATGTCTCGCCTACTTAAACAtcagttacaaattaattgtAAACTCTCTAAAAACTGACACTTTTCTGCGCAAGAAATTAGAGcttaaaaaaccgaaaaaaaatgaaaccaaGACTCCTCACGAGGCCTTAAAAATCCCGCAGATTAATTTGACAGCAAAGGAAGAATTTCCAATAATGCcgatgaagaaattgaaaaaaatggcaataaaCGGCCCTGTCACCTGTGAATTCTGCAGTCTTGTCTTTGAAGACGTCTATGAATTCGACGAACACTTCGAGTCGAATCATATCCTCAAATGGAAATGTAATTTCTGCGACGGAAGTTTTCCAACTTCGGACGAGCTGATCACCCACAAGGCAATGATGCATGCCGGAAATATAATTATCTGTAAAGCCTGCGTCGACGAGGAAACGGCGATGAACGAGAAGAATCTAAAAATCGAGGATGACAGTTTCTCATCCGGCGAGGAGCATGAGGACAAATTTTACATACCCGCCGACGAATCCATGTCATCAAATTCCCAGGAATCAGTATCTCCTCCCGCCGCTTCTTCCTCGAATTCGCCCGCTTTAAAATCCGCCCTCAAATCAACCCACATTTCCGGCGAGGAATTTGCCGATACTCCCACAACTTCAAATCCGAAAAATATGCTGCCCGCGTCTTTCCTCGTCTCGTCCGAGTTGACCTCCAAGTTTCTCACGAGTTCGTCGAAGGGCCAgccgaaaattcttttttccggTGATGGGCCACATTTGGGTTTTGCCGGAAATCCGGATTTGGAATCGGGTCTAAATAATGGCGGCTCACCTGGCGCCGCGGAATTGTCGAAAACGGCGAGGATCACGTCCGTGGACAAGCTGACGAAATCTGTGAGATTTTCGATAAACGACCAGGTCGAGGAGATCAGGATTGGGGAGAAGGGGAAGAATTACATGACCTGCGACGTCTGTCATCTTCGAGTCGATGACAAGAAGCTCTTTGAGCTCCATCAGAAAATTCATCGGTTGAAAACTATGCAGTGTGTTTTGTGCAAGCGGGAATCGCCGACTATTTACGATCTTTATCTCCATAAAAGACAGGCGCACAATCTCTATTCGAAGGTTAATCTGAAATATGTTTGTGACAAGTGTGGACGTTTCTTCTCAAATAGTTGGCAGTGGGAGTCGCACAAAATGCGCCGATGTAGGAATCGAGAGGGCAGCAACAAATGCAAGTACTGCGAGGCTTCCTTCTCCACGGAGCACAAACTTAAACGACATTATAGGAAACATAAAGAGGAGCTGATTAACGATCCTGAAGTTGAACCTTTCAGATGTGTTTCATGTCCGAAAATTTTCTATGATGAGGAATTTTACCAGAAGCACAGAAACGTCCACGATCCCGAATgttggaacaattttaaatgcAACGCATGTGACCGATCTTTCAGAGATGCTGTGAGGCTAAGAGAACACGTAAAGTCCATACACGAAGGAATTAAACCACACGTGTGTGATATGTGTGGAAAAAGTTTTCACCGTTTGTCCAACATGaaagtacATCGAGCGCTGCACCTTGGTCACAAGTGCACTCACTGTGAGCAAGTATTTGAAAAAGTGCGCCAACTAGTGAGTCACATTCAGGACGACCACGGCTTGGAGCCACCAGCCAGCTTATTGGCCAAGAAAGGATACGTGAGCGGAACTTACGTTTGCAGATTTTGTGGAAGAACTTTGGCAACTTATCAGTCTTTGCTGGACCATGAACACATTCACACGGGCGAGAAGCCTTATTCTTGTCACATATGCGACAAAAGTTTCCGaAGCTACACGGCGCGCTGGTCCCACGTGCAGAGGCACGAAAAAGGAACTTACATCTGCGAACAATGTGGCAAAAGCTTCAGCTTCAAGCAAAACTTGATGACACACGTGCAGATTCACGTGTCGATGGAAGACCGGAAACATCAGTGTCACGTTTGCCAGAAAAAGTTTCTTCGAAAGGCGCATTTAAATGTGCACATGCGAATTCACGATGGAATTCGTCCCTACACCTGCGACATTTGTAATTTCAGTTTTACGCAAATCGGCGACATGAGAAGACATCGGGCTCGGCATGAAAATGGCACCGAAATGCGGAAAAGAACGCAGCGACCAAAAGTCCCAATTCCGAAATGGGTGTCCGAAAGCAGCAACGAGGAATCAAATTAA
- Protein Sequence
- MDVVLLDSPSPDCIQVQSDKKAGLKPTMNAQSTDEICRLCGEICENGISIFDNKSSVAEKISRCLPIIVRANDELPSHVCKRCLAYLNISYKLIVNSLKTDTFLRKKLELKKPKKNETKTPHEALKIPQINLTAKEEFPIMPMKKLKKMAINGPVTCEFCSLVFEDVYEFDEHFESNHILKWKCNFCDGSFPTSDELITHKAMMHAGNIIICKACVDEETAMNEKNLKIEDDSFSSGEEHEDKFYIPADESMSSNSQESVSPPAASSSNSPALKSALKSTHISGEEFADTPTTSNPKNMLPASFLVSSELTSKFLTSSSKGQPKILFSGDGPHLGFAGNPDLESGLNNGGSPGAAELSKTARITSVDKLTKSVRFSINDQVEEIRIGEKGKNYMTCDVCHLRVDDKKLFELHQKIHRLKTMQCVLCKRESPTIYDLYLHKRQAHNLYSKVNLKYVCDKCGRFFSNSWQWESHKMRRCRNREGSNKCKYCEASFSTEHKLKRHYRKHKEELINDPEVEPFRCVSCPKIFYDEEFYQKHRNVHDPECWNNFKCNACDRSFRDAVRLREHVKSIHEGIKPHVCDMCGKSFHRLSNMKVHRALHLGHKCTHCEQVFEKVRQLVSHIQDDHGLEPPASLLAKKGYVSGTYVCRFCGRTLATYQSLLDHEHIHTGEKPYSCHICDKSFRSYTARWSHVQRHEKGTYICEQCGKSFSFKQNLMTHVQIHVSMEDRKHQCHVCQKKFLRKAHLNVHMRIHDGIRPYTCDICNFSFTQIGDMRRHRARHENGTEMRKRTQRPKVPIPKWVSESSNEESN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00089817;
- 90% Identity
- -
- 80% Identity
- -