Btre004798.1
Basic Information
- Insect
- Belonocnema treatae
- Gene Symbol
- -
- Assembly
- GCA_010883055.1
- Location
- NC:17198636-17462532[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00085 0.033 14.3 0.1 1 23 253 275 253 275 0.95 2 12 7.7e-05 0.003 17.6 1.9 1 23 283 305 283 305 0.98 3 12 1.1e-05 0.00043 20.2 0.4 2 23 313 334 312 334 0.97 4 12 0.0011 0.041 14.0 0.9 5 23 343 361 341 361 0.97 5 12 0.00035 0.014 15.5 3.9 1 23 368 390 368 390 0.98 6 12 1e-05 0.0004 20.3 0.1 1 23 396 418 396 418 0.96 7 12 1.7e-06 6.7e-05 22.8 0.2 1 23 424 446 424 446 0.99 8 12 1.8e-06 7.1e-05 22.7 3.1 1 23 452 475 452 475 0.96 9 12 4.9e-06 0.00019 21.3 0.5 1 23 481 504 481 504 0.96 10 12 7.5e-06 0.00029 20.8 2.8 1 23 510 532 510 532 0.99 11 12 0.00015 0.0059 16.7 0.4 1 23 538 560 538 560 0.94 12 12 0.00035 0.014 15.5 0.2 1 23 566 590 566 590 0.94
Sequence Information
- Coding Sequence
- ATGACGTCTGATTCTGAAAAGTGTCACTCTAACTGTTTGATTTGTAACAGTAAACTTTCATCTAGAAACACTGTaccaatttttagcgaaaaatcagGATCCCGACCCGAAAGGCCTCttgcagaaataattttttctgtattagAGATTGATATTAGTAGCATCAGTGCGCACTCTAACGTTATTTGCAGAAAGTGCAAAAAACTATTTGAAGAGGTTGACGCATTGGAATGTCGCATGTCTGAAATTAAGTGTGATATCTGTAACAGTTATaagcaaacaataaaaaaagtagcgGAGTCATTTTCAAATGACGAAGAGTATAATGACCATGATTATTTGGACACATCGGAAACGGCAATCCAAGAAATAACAGATGTTAaaacgaattcaaatttaaaaaaacgaagtgacACTAAGGAAACAATTGAGATCGAAAATAAGAATAACCGTAAAGAGGATGAAAATGAAAGTGAAGACAACGCTACTTCTATCAAAGTTTCTGATCTCTTAGAATCAATCAACGATGGTGAAGAAGTTATTATTAAAGTTGAAGCATTGGATAACATAAATGGAGAGGCAAaaagaaattacttaaaaaagttaaaaaatatgacGAAAGAAGAACACTTACAAGAGAAGGTTGTATCTCGCGAAGGCTCGCTGTACACATGCTTGTTATGTTCCCCTAATTATGAAAAAGGAGATGCGAAGTCCGTTATATCACACTTAAGGACAATGCACAATATTCGGTTGTATATATGTGATTTATGTGGGTTGGAGTTCAGAAAAAGAACTGATCTTTCAGTTCATCTTGATGACCATGTTGCAAAAGAGGAAGGAGACTTTCAGTGTGAGAACTGTAACAGAATATTTACTAATTTGCGACTTTTTAGAATTCATAAGCGCATTCATTATCCTCAAACTAAATCCTGGTCATGTGAAATATGTGGGAAACGATACAGTTCTAGAAACTTGCTGGAGGAACATACTAATACCCATACTGGAAACCGGCCTTATATGTGTAAATGTGGAAAAGATTTTGCTTCAAAGTACACATACAAGGCGCACGTCAAAACACATGAATATCGGCCACGACCTTTCGAATGTTCGCATTGTAGTAAAAGTTTTTTGAGTCAGCAAAACCTTAGTCAGCATGAGAGAACTCATAATGGAGTTAAGGAATATGTGTGCGATCAGTGTgGTAAAGCTTTTGGATCACCACATAATCTGGAGGTTCATAGCATTGTGCATACGGGTCACAAACCCTATCGGTGCAGTGAATGTGGCAAAGCATTCGCCAGGAAAGCTGAAATTAGAGATCACGAAAGAACTCATACGGGTGAAAAACCGTACCAATGTGAACATTGTGGTTCTACTTTCAGTCAAAGGTCGAATCTACAATCTCACAAACGAGCAACTCATTACAATGATAAAAGATATAAATGCGATGATTGTGGAAAAGGATTTAAGCGACGTAGACTTCTAGATTATCATATAAAGGCAGCTCATACTGGCGAACGTCCATACAAATGCGAGACTTGTACAGCAACATTCGTTTATCCTGAACATTTCAAAAAGCATATGCGCATTCATACAGGAGAAAAACCATTTTTGTGCGAAGTATGCGGTAAAGCATTTAACAGCCGAGATAACAGAAATGCTCATCGCTTTATACACAGTGATAAGAAACCATATGAGTGTTTAGTTTGTGGCACGGGCTTTATGAGGAAACCTCTTTTATATACTCATATGCAAACGCAGggCCACCTGAATGACACGATAGTGGTAAACCAACCAAGATTGACGACAGAAGAAGATCAAGTTATCACTGTTGAGGAAGGAAATGTAGAACTTTTGATGGAAAACGCTGAAGTTGCACAGatGCAAGAAACAGAATTATACGTAGCTGGGCTGAAGAATCACGTTATTATACATCAGGATGGCAATCAGGTATACCACGAAGGAAATATTTTGAGCATTCCCACCGATGCTAGTGAACAAGTTCAGCATCTAGTTGTAGAGGGGCAGCTTTTAGATAATGAAGAGGAGGAATCTAAGGAAGACATCGAAGAAGCCGCAGAATTGTATAGTTACGAAGATGGGGAAGGTGAAGAAACTTTAGTACTACCGGGAACTTCTGGATACAAGGAAATTTTAGGAGATGCTAAGAATGCAGTTAGATTAGTACAAATAAGAATCCCCACTTCTTCTGCTGGAGATGGAAGAAACTGGTTGAGTTTAGTACAAAGCACTTGA
- Protein Sequence
- MTSDSEKCHSNCLICNSKLSSRNTVPIFSEKSGSRPERPLAEIIFSVLEIDISSISAHSNVICRKCKKLFEEVDALECRMSEIKCDICNSYKQTIKKVAESFSNDEEYNDHDYLDTSETAIQEITDVKTNSNLKKRSDTKETIEIENKNNRKEDENESEDNATSIKVSDLLESINDGEEVIIKVEALDNINGEAKRNYLKKLKNMTKEEHLQEKVVSREGSLYTCLLCSPNYEKGDAKSVISHLRTMHNIRLYICDLCGLEFRKRTDLSVHLDDHVAKEEGDFQCENCNRIFTNLRLFRIHKRIHYPQTKSWSCEICGKRYSSRNLLEEHTNTHTGNRPYMCKCGKDFASKYTYKAHVKTHEYRPRPFECSHCSKSFLSQQNLSQHERTHNGVKEYVCDQCGKAFGSPHNLEVHSIVHTGHKPYRCSECGKAFARKAEIRDHERTHTGEKPYQCEHCGSTFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPFLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGTGFMRKPLLYTHMQTQGHLNDTIVVNQPRLTTEEDQVITVEEGNVELLMENAEVAQMQETELYVAGLKNHVIIHQDGNQVYHEGNILSIPTDASEQVQHLVVEGQLLDNEEEESKEDIEEAAELYSYEDGEGEETLVLPGTSGYKEILGDAKNAVRLVQIRIPTSSAGDGRNWLSLVQST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392960;
- 90% Identity
- -
- 80% Identity
- -