Basic Information

Gene Symbol
snpc-4
Assembly
GCA_010883055.1
Location
NC:70751343-70767403[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 0.14 1.2e+02 2.5 0.1 3 17 171 185 170 187 0.91
2 7 0.81 7.1e+02 0.1 0.0 15 43 221 254 218 257 0.74
3 7 1.2e-06 0.0011 18.7 0.6 3 44 265 308 263 310 0.92
4 7 1.4e-10 1.2e-07 31.4 0.2 2 43 317 362 316 365 0.95
5 7 1.7e-14 1.5e-11 43.9 0.0 1 44 371 415 371 417 0.95
6 7 8.8e-13 7.6e-10 38.4 0.0 2 42 423 463 422 466 0.97
7 7 1.4 1.3e+03 -0.7 0.0 8 19 653 664 651 703 0.74

Sequence Information

Coding Sequence
ATGAGTGATTCGGAGGATCAGCTCATCCTCGACGACATCCGAGCCTTGGAAGATGCCTTATCCCGGAAAACTGAATCACACCAGATTTCCGAAGTTTCATTTAAGAAAGAAACTAATCCTCCCACCGTTCATCATCCACGaaaaattgaaatcgatttaCCAATCTCCGAATCTGTCCCAATTAACGACCAGCAAACCATCGAAAACACCGTCGAATCTTCCTTTGATCCTGCCGAGGCCTTGGAACTTAATCAAAAACTAATTGAACGTCTCATCGCGACACGGAGCGAAGTCGCCGAAATTCTTGAAGAATGCAAAAGAAAAAGGGGAGTTGTCAGCATCAAAATTAAGCAGCGTTTAAGACAACTGCCCAATCCGAAAATATTATCCTCGCATGCTGGCATGCCGTACTTCAAGGACAAAGATTTTTTCACGGCTCCTGCGAATGAAGACACAAAATTGAAGGAAGCTCGAGGACAGCTGCAAATAATCCACCTTCGACGCGTGTCTCGCTGGACAGTGAAAGATAAGGAGACTCTTTTGAAAGCTATTCACCACGAGGTTGTTGCCGGATTGAAAGATCTTGACGAAGAAGAGGTGGATGCGGTTGAGAAAATGACTCTGGGCAAGAGTCACTCTTTGCCAGCTGTTGTTACAGATGCGATTGGACGTCTTGGCAAAAGGGAATTTGATTGGATGAAAATTGCCGtgattgattttcaaaataaacattccCCGGAAGAATGTCGCGTCATGTGGAACGTTTTTTTACATCCTGATATCAATAAGTTTAAGTGGAAGAAGAAAGAACTCTCGGATTTGCATACTCTTGCGAAAAACTACAAGTATCAAAATTGGGACGAGATTGCCAAGGAATTGgGTACGCAAAGAAGTGGCTATCAATGTTTCGTAAAATACAACACGACGAAAAAGACGCAGATCAATGAAAGACCCTGGGCAAAAAAGGAAGACACCAAGCTCGTGCATCtcgtaaacaaattcaaaatcggCGACTTCATCAACTGGGGTGATATCGCAAGCTGCATGGAGAACCGAACCAAACAGCAAATCTACTTCCGCTGGATGTACAGTCTCGCGCCTCATCTTAAAAAGGGAAGATTCACCGACGAGGAGGACAAACTTCTGATAAATGCGATTGAAAAGTACGggccaaatttcaaaaaaatatctgcCCTCGTCCTACCAACGAGGACTTCCGCCCAGCTCAGCGACCACTACAACACCATTACATCGAACAGGGGCGAAAATGCCTGGACCGTTGAGCAAGACTCAAAACTTCTCGCATTGTACGCCGAACATGGAAATGACTGGGCCAAGATAGCAAGTTTATTTGTCAACAAAGACCGAGTTCAACTGCGTCATCGGTATTCGGCTCTGATTCGATACAAAAAACGAGGAATGTCGCTCGATGACATTCCGCGGGACAATTCGCGGCAAAAAACCTTccaaaaaagtattgtttttcaaaaaataccgcGAAACAATACCCAAAATCTGTGTCAACTTCAGGGCGTCGACGAGGTGGACCGCGAAATAATAGACTACTTTCAGAAGTTCAATACGCCCGCGGCGAAAGCCGGGCGCCGAAAGAAATTCTATCAAGACAGTGAGCTTCAATCACTCAGCCGGAAAATGCATAATCTTCTCGCATTTTTAAATGCCAAACTGAATATTCCCTACGACCTTGAGACCTACGACTCCCTCACAGAGAAGGACAAACAGCTGTTGCACTCGCTGAAGAATCTTGCGCATGATGCAGCTCATGGCGGTGCACCGTCGAGGAAGGCGGAACAGATGAGAATCGCTATGTTTGGATTTGGAGAGCAGGAGGGCGATGGCCAGGAGGAGGATGAGCACTTTATACCGCCTTTGCCGTTTGGCGTGCGCGGGAGAAAAGATCGATTTGATCAAGTGATCAATTACAGTCCGTTCAGTGAGGAGGAGCGTTTTCTTGAAGCTAGACAAATGTACTTCGAAACGCCCTACAGCATCATCGAGGCAATTGGCGAGGGTGTGAATCATGGATTTGATAAATTGGGCAAACTGCTCGCGCAGCCAAACTACAAATCCGAGAAGCAAATTGTCAACAGCATTTATGTACTGACGCCTCGGCAATTGGCGATTCGTGAATTGGCGAATCCAAGACAAGTGGTGAGGAATTTTCCGAAAGCAAGCACCTCCAGCACGATGAATTCGGATGTCACGCTTCTCGGTACTTTTCAGAATCACTTTGCGTGTAAAGTATTCGATGTGGATGGTATCCCGACGATGAAACCAAATTATTGGACGTTGCTTGGTTATCAGCAGATTCTGATTGCCATGAAACAAATGAATCCGGAGAATAATGTGATTGATTGTGCGGAATTTGGGAGTAAAATACGAGAGAAGGGGAGAATAGCGCTGGAAACGCTTAGAATGCGTTTAGTGCAATTATTTAAGTATCCTCTTATTATGTCACAAGTTTTGCCGCCGGAGTCTTTCCAAGCGGGAGACATGTTTTTCCTGCAGCAAGGTAAGAGGAAACTTGATGCCGGCAAGCAGTCGGGtgcgaaaagaaaaaaaaggagaaattaa
Protein Sequence
MSDSEDQLILDDIRALEDALSRKTESHQISEVSFKKETNPPTVHHPRKIEIDLPISESVPINDQQTIENTVESSFDPAEALELNQKLIERLIATRSEVAEILEECKRKRGVVSIKIKQRLRQLPNPKILSSHAGMPYFKDKDFFTAPANEDTKLKEARGQLQIIHLRRVSRWTVKDKETLLKAIHHEVVAGLKDLDEEEVDAVEKMTLGKSHSLPAVVTDAIGRLGKREFDWMKIAVIDFQNKHSPEECRVMWNVFLHPDINKFKWKKKELSDLHTLAKNYKYQNWDEIAKELGTQRSGYQCFVKYNTTKKTQINERPWAKKEDTKLVHLVNKFKIGDFINWGDIASCMENRTKQQIYFRWMYSLAPHLKKGRFTDEEDKLLINAIEKYGPNFKKISALVLPTRTSAQLSDHYNTITSNRGENAWTVEQDSKLLALYAEHGNDWAKIASLFVNKDRVQLRHRYSALIRYKKRGMSLDDIPRDNSRQKTFQKSIVFQKIPRNNTQNLCQLQGVDEVDREIIDYFQKFNTPAAKAGRRKKFYQDSELQSLSRKMHNLLAFLNAKLNIPYDLETYDSLTEKDKQLLHSLKNLAHDAAHGGAPSRKAEQMRIAMFGFGEQEGDGQEEDEHFIPPLPFGVRGRKDRFDQVINYSPFSEEERFLEARQMYFETPYSIIEAIGEGVNHGFDKLGKLLAQPNYKSEKQIVNSIYVLTPRQLAIRELANPRQVVRNFPKASTSSTMNSDVTLLGTFQNHFACKVFDVDGIPTMKPNYWTLLGYQQILIAMKQMNPENNVIDCAEFGSKIREKGRIALETLRMRLVQLFKYPLIMSQVLPPESFQAGDMFFLQQGKRKLDAGKQSGAKRKKRRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00011026; iTF_00980050;
90% Identity
-
80% Identity
-