Bbay007506.1
Basic Information
- Insect
- Bellardia bayeri
- Gene Symbol
- -
- Assembly
- GCA_950370525.1
- Location
- OX493265.1:6954910-6959361[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0012 0.095 14.0 2.2 2 23 86 108 86 108 0.96 2 9 4.5e-05 0.0037 18.5 0.1 2 23 114 135 113 135 0.97 3 9 0.91 74 4.9 1.5 1 20 176 195 176 197 0.91 4 9 0.024 2 9.9 0.1 2 23 683 705 682 705 0.95 5 9 0.00027 0.022 16.1 0.4 1 20 789 808 789 810 0.95 6 9 0.11 8.8 7.8 6.6 1 23 818 840 818 840 0.97 7 9 3.5e-05 0.0028 18.8 7.2 1 23 846 868 846 868 0.98 8 9 0.00068 0.055 14.8 2.8 1 23 874 896 874 896 0.97 9 9 0.044 3.6 9.1 2.5 1 20 902 921 902 923 0.93
Sequence Information
- Coding Sequence
- ATGTTGGCTGCAGTAAAAATTAAGGAAGAGCCTCTTGATGAAGTTGAAGATTTGCAGGAAATATTTGGACAAGAAGAAGCATTAATGAGCAAACAAGTTAATGCTGAACTGCTGGGTcaaacttttactaataatttcCACATTGTTGAGGAACGGGACAGCATTATTACCGTTAGTGCTGCCGACATGAGGTGTCAAGATGAACTTCAGTTCATAGATTCCATAAACAACTCGGATCCCAATAAATTCCGGGGTGTTTGTTCCAAATGCCTAAAAGCATTTACAAATCGTGCACAATTCTTAAAGCATACCAAACGTAACCATTGTATAACCAAACAAAAGTGTCCGGTCTGTCCGGTAACATTTATAGATTCTTCTTCCTTGCTAAATCATTTGAATTTACATCGCGataattatttcttttgttcACATCATTGTGGTGCCAATTTTGCCACACTACACTTGTGTGAGGAACATGAACTAAAGGAACACAAAGCGcAAGCGGCtgcaaaaattcgttataaacatttttgttcgtTCTGTCGTGAGGGTTTTAAGACCGAGTTGCAATTGCATGTGCACTGGCTGCAACAGAACCAAGGCTGTGGCAAACTAATGCAAGATGTTGTACTGCATTCCACAAATGTTGCCAACAATTACAATACAAATAGCAAAACCATAAAAAATCTATCGATTGAAAAACAATTAACGCCGGCTCCAGCAAATTCCATGTCCATCATACCCATAACTAAATTAAGATTAAGATCTGCCACACCTACACCCTCCTCAACCGACCCTCAAACAGCAAATAAAAGGCACACAAATCAACCAAATGAGGAGTCCGAGACCCAAATTAAGCGTTTTAAAATGCTGAACAAAATTAAAGATGAAATAGAAACTAATCAATTGGCTTTTAATTTTGACACTGATATACAAATAAAGGAAGAACCTTTAGATACTTATGAAAGTGATATGACTGCTAATCTAATACCAGAAGTTATTATCAAAACTGAAGATGAGGAGCAACCCGAAGAACAGGAGCCAGTGAATGACAAACCTAAAATGAAGTCTTTAATACTAACTAATATGATTGGGGCCACCTCAAGTGGTAAATTTATGCCTCTGGAAAATACCAAAACTGAACCCAAAAccgaaatgaaaacattttccataaataGTTTGGTAAAAGCTAATGTTAATGGCAAAATGATAAATGTGAATAATCACAACAAACTACCggttttaaaacttattaataacaataacaataatcataatataaatattaataataatagtactAAACCTTTGGTGAAAAATGAACATTTgagatttgttaaaatattgccCGCCCCTTCTGTGCCAGAAGCAAACACCAAATCTCTCAAAAACTTTAGTTTCaccaatataaaaaattgcgGCACCGGTAAATTAATGACACTCAAATTAGCTAACGGTCAAAGTCTATCAAATAATGCTGATATCAAGCCTTTACCCACAACTGGtttgcaaattattaaatttctacCCAATACCCAAATAATAAGCATGAAAGCAAACCAAAATAACAAACCACCTTtggttttaaaacttaaaactgcTCCTACTTTAGCTGCTGCTAATTTAAGTGAAACAAAAGCATGCTCACCCAAACCAGCTAGTAGCAGCACCTCATCTACTGTTTCCATAAAATTAAACTCCCTTGAAGAAAATACCACCATTGACGCTGAAGACTTTAAGAAGCTCCAGGCTGAGGCCTTGATAAAAGCCGAAGAGCATcgcaaaaacttttatatacccAAGACGCGACTCATGATCATCGAAAATATACCGGAGAAAAAGCAATTGATAGATAGCATGAAACAGCAAATTGCCGATGTTGAAACTAAAACTACCGAACAGATCCAGGGTAAACCGGCTGGTAACTTCATTTTAAAATCTAAGGGATGTGATGAACCGGTTTCATTCTATTTGCCCATACTTACCACACTGGATGTTGAACTGGTCGAAGCACGCTATCAAAATCCCAACTATTGTTATAAATGGATTTGTCCCTATTGTCTCAAGGATTATGAGATAAAGACTGCTTTAAAGGTGCACTTGAATCGGGCTCATAATTTGAATAATCGTGATATGGAAAAGATAAATGTACAGGCGAAACCGTTTGTGTGTGAAGAAAAACTACCACAGGAAGAGGATATCAAAAACGAAATTAAAGAAGACATAAAGCCACAAATTAAATTAGAAGACACTGATTCTCAAAACTTAACAAACTCTGAAACAGAATCGTTAATAATTGAAACTTCGTCTTCCTCATCGCCTAAAGACCGCAAAGCGACAAACATCAAACACCCCAGACCACGTTACGTGTGTGACAAATGCGGTCGCACCTGCTCTTCGAAGACCATGCTCAACGATCACGTCTTGGCCAATTGTAGTCGTGAGCCACAGTATTCATGTAAAGAATGTAGCAAGAAATTCTTTTCGCATGGCACCCTACAATGTCACATGACCATACACACCGGTGAATTGCCGCACAAATGTAATTATTGTGATAAGCGTTTTCGCACTCGGGGACAAGTGAAAGTGCATCATCGAACGCATACAGGAGAAAGGCCGTTCTTTTGTCAGGTTTGCTCTCAACGTTTCACTCACCGTGAAACCTTAATAGCCCATTTATCACGTCACATAGGCATGAAACGTTATAAATGTTATGGTTGTGATAAACATTTCTCTTGCATTAGTGCCCTAAAGACACACCGCGAGATACGTGTCGATACCTGTGGCAAAGTTAAGTTCAATCCTCGTGCCATTGGCCCGCGTGTTCGAGTCATACGCGGCAATGTTATATTTGAGCCTCAGCCCGAAATAAATCCCTACTTAAAGTCTGAGGATCCCAAAAGTGTGTTGTCTGAATTACAAAATCAGTCTCAGTCAACTTTAGAAGCAACATAG
- Protein Sequence
- MLAAVKIKEEPLDEVEDLQEIFGQEEALMSKQVNAELLGQTFTNNFHIVEERDSIITVSAADMRCQDELQFIDSINNSDPNKFRGVCSKCLKAFTNRAQFLKHTKRNHCITKQKCPVCPVTFIDSSSLLNHLNLHRDNYFFCSHHCGANFATLHLCEEHELKEHKAQAAAKIRYKHFCSFCREGFKTELQLHVHWLQQNQGCGKLMQDVVLHSTNVANNYNTNSKTIKNLSIEKQLTPAPANSMSIIPITKLRLRSATPTPSSTDPQTANKRHTNQPNEESETQIKRFKMLNKIKDEIETNQLAFNFDTDIQIKEEPLDTYESDMTANLIPEVIIKTEDEEQPEEQEPVNDKPKMKSLILTNMIGATSSGKFMPLENTKTEPKTEMKTFSINSLVKANVNGKMINVNNHNKLPVLKLINNNNNNHNININNNSTKPLVKNEHLRFVKILPAPSVPEANTKSLKNFSFTNIKNCGTGKLMTLKLANGQSLSNNADIKPLPTTGLQIIKFLPNTQIISMKANQNNKPPLVLKLKTAPTLAAANLSETKACSPKPASSSTSSTVSIKLNSLEENTTIDAEDFKKLQAEALIKAEEHRKNFYIPKTRLMIIENIPEKKQLIDSMKQQIADVETKTTEQIQGKPAGNFILKSKGCDEPVSFYLPILTTLDVELVEARYQNPNYCYKWICPYCLKDYEIKTALKVHLNRAHNLNNRDMEKINVQAKPFVCEEKLPQEEDIKNEIKEDIKPQIKLEDTDSQNLTNSETESLIIETSSSSSPKDRKATNIKHPRPRYVCDKCGRTCSSKTMLNDHVLANCSREPQYSCKECSKKFFSHGTLQCHMTIHTGELPHKCNYCDKRFRTRGQVKVHHRTHTGERPFFCQVCSQRFTHRETLIAHLSRHIGMKRYKCYGCDKHFSCISALKTHREIRVDTCGKVKFNPRAIGPRVRVIRGNVIFEPQPEINPYLKSEDPKSVLSELQNQSQSTLEAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00259293;
- 90% Identity
- -
- 80% Identity
- -