Bbay018676.1
Basic Information
- Insect
- Bellardia bayeri
- Gene Symbol
- -
- Assembly
- GCA_950370525.1
- Location
- OX493266.1:99544641-99548416[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.23 19 6.8 5.7 1 23 233 256 233 256 0.97 2 11 0.00042 0.034 15.4 1.5 2 23 287 308 286 308 0.97 3 11 0.14 11 7.5 3.3 1 23 385 408 385 408 0.96 4 11 0.063 5.2 8.6 1.1 2 23 416 437 415 437 0.97 5 11 3.3 2.7e+02 3.2 0.3 3 19 447 463 446 466 0.93 6 11 0.56 45 5.6 0.0 5 23 485 503 484 503 0.95 7 11 0.021 1.7 10.1 0.1 3 23 549 569 548 569 0.98 8 11 3.7e-05 0.003 18.8 1.4 1 23 575 597 575 597 0.99 9 11 7.5e-06 0.00061 20.9 2.6 1 23 603 625 603 625 0.98 10 11 1e-05 0.00083 20.5 4.1 1 23 631 653 631 653 0.99 11 11 0.00012 0.0094 17.2 0.0 2 21 660 679 659 683 0.91
Sequence Information
- Coding Sequence
- ATGAATAATGGTTGTTTTATTAATGGAATCCAATATAAATGTCGTACATGCTTTGATCCGGGACAAACTGTTTACTCCCTTACAGCTGAATGCAGCAACTCGAAAACATGGCGAGATTTATTAAAGGATATTGCTCACTTACAGACAAACGAGGATGAGTTACTCCCAAAGACCGTGTGCTGTAAATGTTTGGATAAACTTATAAGTTACTATGATTTTATACTGCAGAtacataatgtaaataaaaaatactctgAATTATTGGGAAGATGTAAGAATGAGAATTCAACTGAAATTGATAAATATACTGATTGTTTCGCAGAAGATGCTAATTTGAATCCGGTGGAATTGATATCAGAAATTAAATTGGAGGAAGAACAGGTTGTTCCATACGACATTGTTTGCAGTGAcaataataaattgcaaaaattggaaaatatagACACTTATGACCCTTTTATGGAAACTTGTGATGAGGCTATCAATTCGATGTCAGTGCAGTTAGAGGAAATCCAAAGATCACTAAACGAACAGAAAAATCTATGTTCAAACgatgacaaaaacaaatttagCTCCTTATCGACCACTGACAATGATTATGAATCACTCCAAAGaCCAGCAGTGCAACGGAAAGAATGTGCATTAATCGGAAAAGTCAACGGACATATAACTAAAAAACACTCACAAGAAACCATATTTCCTTGCGGATTTTGTGATCAACATTTTAATTGTAAGGACTACTTACAGCTACATCTTAAACGTAAGCATCCAGGAGAATCATTAGATTCAAACTCCAAACATATACAACGTTTATTTGGAGATCGTTTATACAGCAAGCCTAAAGCATGGCGTTTGGTAGAATGTAAATTGTGTTATACAACATTTACAACAACTAAAGAACTTCGTCAGCACTTAGAAAAACACAGTGATATAAACACCATTCAAAGCATGGACTTGAACAGTAACattgttcaaaatttatttccagAAATTATTGATCTGGACATTGTCAAGGAAAGTATATCTAATGATATTCGTGAGAAACAATGGTTCAAATATTACACAGTgttaaatgaacatttttatgaaatgtCTATTAGTGACACGGAAGCAGAAGATTTGCTGGAAGAAACTGCAGAGCGTGTCGTCAAATACAAGTGCGAATTgtgttttgaagattttttttataaacaccaAGTTTTCTCCCATTTAAAAGAAGTTCATAACGAGGAAGAAATTCCTTTGAAATGCAGTCGATGCAAATtagaatttatttcaataaaaatgtacGAAGAACACAGGCAAACTCATTGCCGAAATAGAAATAAAGTTTTGCTTTGCGCAAATTGTCCAGCCAAGTTTGTTTGGgcggaaaatttgaaaaaacacagttgtttaacaaaattaccAGGGAACTGGCTTGCAATTTCAAAAGATCAACTAAAACGTAATATATGCGAACTTGTATTTGAGGAAAAAGCAGAATATCAAGAACATTTAGTTACACATAATAATGACAGGACCGCATCTTTAATTACACATCGTGGAATCACAGGACAGAACCAACTATTTTCAACGCCaatcaacattttcaattcaaatgttTCCGAAGAGTCCAGTTCAAATAAGGGAATGAAATCGCTATGTCCTATGTGCGGAATCTGGCTGTCATCCAATACGAGTCTAACATTACACGTTAGAACGCACACGGGTGAGAAACCCTTCAAGTGTGATTTGTGCGAAATGGCCTTCGTAcgcaaacaaaatttagataCTCACCGACGAAAACACACTGGTGAACGTCCCTACAAATGCACGATCTGCGGTAAAGCATTTACGCAAAACTGTAAATTATCTGTTCATAATCGCATACACACCGGCGAACGTCCATACAAGTGCAAGTTTTGTCAGAGAACATTTACGAAATCGGACTCGTTGCGACTACATTTGCGTAATCATACAGGTGAGAATCTTTCTGTGTGTGATATTTGCGGTAAATCTTTTGTATTACCCGTGTATCTGAAAAGACATCGCATCGCAATGGGACATCACGTtgaataa
- Protein Sequence
- MNNGCFINGIQYKCRTCFDPGQTVYSLTAECSNSKTWRDLLKDIAHLQTNEDELLPKTVCCKCLDKLISYYDFILQIHNVNKKYSELLGRCKNENSTEIDKYTDCFAEDANLNPVELISEIKLEEEQVVPYDIVCSDNNKLQKLENIDTYDPFMETCDEAINSMSVQLEEIQRSLNEQKNLCSNDDKNKFSSLSTTDNDYESLQRPAVQRKECALIGKVNGHITKKHSQETIFPCGFCDQHFNCKDYLQLHLKRKHPGESLDSNSKHIQRLFGDRLYSKPKAWRLVECKLCYTTFTTTKELRQHLEKHSDINTIQSMDLNSNIVQNLFPEIIDLDIVKESISNDIREKQWFKYYTVLNEHFYEMSISDTEAEDLLEETAERVVKYKCELCFEDFFYKHQVFSHLKEVHNEEEIPLKCSRCKLEFISIKMYEEHRQTHCRNRNKVLLCANCPAKFVWAENLKKHSCLTKLPGNWLAISKDQLKRNICELVFEEKAEYQEHLVTHNNDRTASLITHRGITGQNQLFSTPINIFNSNVSEESSSNKGMKSLCPMCGIWLSSNTSLTLHVRTHTGEKPFKCDLCEMAFVRKQNLDTHRRKHTGERPYKCTICGKAFTQNCKLSVHNRIHTGERPYKCKFCQRTFTKSDSLRLHLRNHTGENLSVCDICGKSFVLPVYLKRHRIAMGHHVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -