Bbay027203.1
Basic Information
- Insect
- Bellardia bayeri
- Gene Symbol
- -
- Assembly
- GCA_950370525.1
- Location
- OX493268.1:62800752-62805095[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.6 7e+02 1.9 1.1 5 23 498 516 492 517 0.90 2 17 0.0035 0.28 12.5 2.4 2 19 529 546 528 548 0.95 3 17 0.13 10 7.6 0.4 3 23 591 612 590 612 0.94 4 17 1.3 1.1e+02 4.4 0.3 5 23 622 640 619 640 0.92 5 17 1.7e-05 0.0014 19.8 2.1 1 23 647 670 647 670 0.96 6 17 7.3e-05 0.0059 17.8 2.8 2 23 677 698 676 698 0.97 7 17 4.6 3.7e+02 2.7 0.0 1 20 707 726 707 728 0.89 8 17 0.015 1.2 10.5 1.0 1 22 748 769 748 772 0.91 9 17 0.036 2.9 9.4 3.3 1 23 777 799 777 799 0.94 10 17 0.43 35 5.9 0.2 1 23 815 840 815 840 0.96 11 17 0.02 1.6 10.2 0.3 2 23 853 875 852 875 0.94 12 17 0.0031 0.25 12.7 2.9 2 23 881 903 880 903 0.94 13 17 0.0028 0.22 12.9 1.3 2 23 907 929 906 929 0.92 14 17 0.16 13 7.3 4.3 1 23 935 958 935 958 0.96 15 17 0.00054 0.044 15.1 0.6 1 23 963 985 963 985 0.98 16 17 1.2e-06 0.0001 23.4 1.9 1 23 991 1013 991 1013 0.99 17 17 0.036 2.9 9.3 0.2 1 23 1019 1048 1019 1048 0.85
Sequence Information
- Coding Sequence
- ATGGCGGTTAATAATTCCACATCTGCCAGTATCTGTTTATATTGCAAAACAACCTCTGAGGAGGATGCAGAAAAAGAATTTCATGAAATCTATGATGATGTGGGAGTGGAATTGCAATTGCCCACGTtgattgaaaagttttttaatattatagtaaaaaatgataaaaagcATACACTATGTGATGATTGTGTTAACCGTTTAATAGAGTTATATGATTTGGAAGAATGCACTAAAGAGGAAGAAAGCAAGGTAGATGATTTTATCAAGGGAGTCCCAAGTATTGATgaggaaaatattaataaagaaaaatgcaAAGTAATTTCAAAAACAGTAGATGGGAAATTTACCGGGGAGGCTGTAAATGAccaatataaattgaaatgtgCAAATATTTTGGAGCAAGATGAACcacaaataattttacaaaatagtgTTACTATACAACAAGCAGAACAGCGTAATGCTATAGGAAATGTTGAAGAAAGTGAACCAGAAAAAAACGAATATACAGATGATGTGGAAGGTTTTATTAGCAAAGTACAGTCTGCTATGTTTACTGACAAAGATAATCAAACTAATCACCCTAATACTGACAATTTTGAACCAGAGAATTTTGAAATCGTTTTGGAACAGTGCTATagtaatataatttgtaatagtCCCATAAATGTTACGAACGCATGCGAACAAGAATCCAATGAGGATATTGTATTTGTCGAAGATTATGAAGATATTATTTCAGACATAGAAAATGAGATTGGCACAAATATCACTGGCGCTCAAATGTGCAGCGAAGAATATGAAATGTTAATGAGTCCAATAGATGTAATTTTAGAAGATGAACAAATATCTGAGGCAGAAAATGAAGCAGTTGATGATAATTGTATATATAGTGAGCAAAATGATATTATCGAAGAAGATGTTTATGAAGTAGAAAATCAAGTTTTATCGGACTTCCAAAATGAAGATAATCAGCTACCACCTATTGAAGATATACAAGCTGAAGAACACGAACTTGTATATTATGAGGAAGATTTGTCAAGTAATAATGAAAACGAATGTCTTCATGAAATATTGGATGACTTAGAAAATGATGATATAGAATTTAATTCATTACATGCCGAAGATTCGGTAGACATAGACACTGAATCACTAAATTCGAATTGTAATGGAAACAGAAtcaataatagaaataatattgacgctgatgaaaatattgaaaacgatCCAGATGATCCCGAAGACGATACTTACTCCATAGAAGAGGAATATTTAATGGAagaaatcaCTTGCTATCAGGAATTCGATTGTATTGATATAACTGAATATTTGGAAAAGGTTTTAGTAACAAAATTTCAAGATTTACAATTTGATTGGGAAGTGGAATGTGAATTGTGCCATGACATATACAATACCTATCAAGAAGTATTAAATCATGCCTGTGTTATACAATTCGAAGAGGAACAACAGTTCAGTtgcattattaaaaattgtaaggaaacaataaacaattttcagaCTCTAGCAAGACATTTAATACTACACCATTATGATAAATTGGAGagCATACCTATTTATGGTAAATGCCCAGATTGTcagaaaacattttcaaattttatagaatttaataaaCACTCTTGTTGCCGCACTATTAAAAGGAAAACGGGATCACCTAATTATTGCCAATCTTGTGATTTGAACTTCCAATCATTAAAGAGatttgtattTCACATGCAATTTCATTTAACAAACCATCGACCCaagatttgtttattatgtggccaattatttaataattccaATGATTTCTTTGAACATACTCAATATGAACATAATCCTAATGCTGCCATGGCTTGTATAAATTGTGATCGCTTCTTTAAGGAAAAAGATGTATTTGATAGCCACATGGAATTGCACGAAGATTTCAAATATCAGTTTACCTGTAAATATTGTCCTAAAAAGTATACTAATAAATTTGGTTTGAATCAACACATGGATGTTTATCATAATAAATCCAAAAACTTACAATGTGAACATTGTGAAAAAGAATTTGTTAATAACTACTCATATCGGAATCATTTGAAATCTCATGCCGCTGATGTTCAAgtagaaacatttttatgtgcTACATGTGGTTTGATAACTAATAATTCTGAATTGATTAAGGAGCACATTGAATTAGACGCTAATTCACCTTGCTATTCTTCTCAAATAGAGGAGAAAACCTTGGGTCTGGGCTATACATGTGAAAACTGTTCCAtagatttttatacaattaaacaGCTAAAGCAACATCGTTTAAGTGATAATCATAGTGATGATATATTTTATTGTGGTGTGTGTCGTCGTGAATTTAAGACATTGCGTCATATGCGTAACCATTCCATTAATCATAAAGATTTCGAAAAATTGCAGCAATCATTTCCAATAACACGATATTTTGTGTGCAATATAGGTGATTGTCAGGAGTTTTATCCCATTTGGACCTCATTATATTACCACAAAAAGCGTCCACATAAAACAAAGGAAATTTCCGATACTACAACCGAATTGAAATGTCAATTTTGCCAACAAATATACAGTTCGAAAATGTCTTTGGCAGTACACGTAGCTAGAAGTCATAATAATTCCAACATTAGTTGTTCTCACTGCACAAGAACATATAAATCCCAAAAGCTCTTACAAGATCACGTTGATAAATTCCATACACCCGTAAAATGTaacatttgttataaatattttaaaaatcgtcggAACCTAGATTCACACAGTAATTTGGTACACCTTAATGTGAAAAGGTATTTTTGTCAATATTGCAAAAAAGGTTATTTCCACAAAAGTGAAAAGGAAATCCATGAGAAGAAAgTACATCCTGAAATTTCCTATAAATGTGAAATTTgcgattttataacaaattattccAAATCTTTAGAGATTCATATGGACAAACATAATAATCAGCAGAAATTTAAATGTACAATTTGTAATAAGACATTCGGAAGGAAACAACTATTACAAGTGCATATAAAAAGGCATCTAAACAAAAAAGATTACGTCTGTTCCAAGTATTTAACTGAAAGTGGCTGTGATGCTGCATTCTTTACTTACAATCTATTAAAAATCCATATACAAACTAAACATCAAAAAGACAACATCAAACGTAAAAGATCTAcatcaaaaaaatatgttgtacaAATTGAAGATAATtcttatgaaatatttgatattgatGAAGACAGTAGTACGCAAGTAAAACGTCATAAAACCAGTGTTGCAAATGAACAAGATGCTTTAGAGCTGGCTATGAAAAAGGAACTAGAATCACAAAAGCAGAATAGTGATGCCGAATTTGAAGCAATGTGTGACTGA
- Protein Sequence
- MAVNNSTSASICLYCKTTSEEDAEKEFHEIYDDVGVELQLPTLIEKFFNIIVKNDKKHTLCDDCVNRLIELYDLEECTKEEESKVDDFIKGVPSIDEENINKEKCKVISKTVDGKFTGEAVNDQYKLKCANILEQDEPQIILQNSVTIQQAEQRNAIGNVEESEPEKNEYTDDVEGFISKVQSAMFTDKDNQTNHPNTDNFEPENFEIVLEQCYSNIICNSPINVTNACEQESNEDIVFVEDYEDIISDIENEIGTNITGAQMCSEEYEMLMSPIDVILEDEQISEAENEAVDDNCIYSEQNDIIEEDVYEVENQVLSDFQNEDNQLPPIEDIQAEEHELVYYEEDLSSNNENECLHEILDDLENDDIEFNSLHAEDSVDIDTESLNSNCNGNRINNRNNIDADENIENDPDDPEDDTYSIEEEYLMEEITCYQEFDCIDITEYLEKVLVTKFQDLQFDWEVECELCHDIYNTYQEVLNHACVIQFEEEQQFSCIIKNCKETINNFQTLARHLILHHYDKLESIPIYGKCPDCQKTFSNFIEFNKHSCCRTIKRKTGSPNYCQSCDLNFQSLKRFVFHMQFHLTNHRPKICLLCGQLFNNSNDFFEHTQYEHNPNAAMACINCDRFFKEKDVFDSHMELHEDFKYQFTCKYCPKKYTNKFGLNQHMDVYHNKSKNLQCEHCEKEFVNNYSYRNHLKSHAADVQVETFLCATCGLITNNSELIKEHIELDANSPCYSSQIEEKTLGLGYTCENCSIDFYTIKQLKQHRLSDNHSDDIFYCGVCRREFKTLRHMRNHSINHKDFEKLQQSFPITRYFVCNIGDCQEFYPIWTSLYYHKKRPHKTKEISDTTTELKCQFCQQIYSSKMSLAVHVARSHNNSNISCSHCTRTYKSQKLLQDHVDKFHTPVKCNICYKYFKNRRNLDSHSNLVHLNVKRYFCQYCKKGYFHKSEKEIHEKKVHPEISYKCEICDFITNYSKSLEIHMDKHNNQQKFKCTICNKTFGRKQLLQVHIKRHLNKKDYVCSKYLTESGCDAAFFTYNLLKIHIQTKHQKDNIKRKRSTSKKYVVQIEDNSYEIFDIDEDSSTQVKRHKTSVANEQDALELAMKKELESQKQNSDAEFEAMCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -