Bbay001024.1
Basic Information
- Insect
- Bellardia bayeri
- Gene Symbol
- -
- Assembly
- GCA_950370525.1
- Location
- OX493264.1:11518645-11522888[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00066 0.054 14.8 1.2 1 23 356 379 356 379 0.95 2 12 8.7e-06 0.00071 20.7 1.1 1 23 384 407 384 407 0.96 3 12 7.3e-06 0.0006 21.0 3.7 1 23 412 434 412 434 0.97 4 12 0.00045 0.037 15.3 2.1 2 23 441 462 440 462 0.96 5 12 0.0017 0.14 13.5 2.8 2 23 470 492 470 492 0.95 6 12 0.029 2.4 9.6 1.4 1 23 498 521 498 521 0.95 7 12 0.007 0.57 11.6 1.8 2 23 532 554 531 554 0.94 8 12 2.9e-07 2.4e-05 25.4 0.7 1 23 582 604 582 604 0.98 9 12 7.7e-06 0.00063 20.9 2.3 1 23 611 633 611 633 0.96 10 12 0.00026 0.021 16.1 0.2 3 23 641 661 640 661 0.97 11 12 0.011 0.93 10.9 1.3 1 23 668 690 668 690 0.98 12 12 0.0013 0.11 13.8 3.3 1 23 696 719 696 719 0.98
Sequence Information
- Coding Sequence
- ATGGAAACTTGTCGCACTTGTGCCAAATGTGATTTTGATAATGCAACCCAAtggtttgatttatttaatgctCCTCGTTGGCAACTTGAAACGGAACGCATACATTTGGAGTTAAATACTTGGAAAATAAagATTTCGTGTAACGATGGTTTGCCACAAAAAATTTGCACTGattgtttttcgaaattttgCACAGTCTCCTCATTTCGTCTACAATGCCTGGAGGCACAAACCATATTAAGCAATATATTCGATAAAATCGATACACAAAGCATGCAGGATGATGAAGTTTTCGAGGGTTTTGCTAATGAACAGGATAACGATATACTAAATACGGTAAAAACTGCAACAACACACATGATAGTAGCAGTACCCATTGAAGCAGCGACAGCAGCAGAAGTGGTACAACATTTAAAGTCAATTGAACACACATTAGAGACAAAAGCAGAAAAGAGCACAAGcagtaacaaaaacaacaacaacagaagcaACAATGaaaatatcagCAGTTTTAGTGAAATCTTAAATCTAAATCCTAATAACAACACCGAGGTTTCATTTAGAGCTATAACAAAATTACCAGACACTGCCGTTTTAGCaaacgaaaataaaatacaaaattttaatcacATATTAGTAAATGAAGAAGatgatattaataataataacagcaaTAATTATGATGAAGATGCCTCCACCAGTAATCTCACTACTTTAAATAATAACGAAATCACAACACTACCAAAAAATACCAACGATTTAGATGATAATGATCTTATAGAAGAACTTATCGAAGATCTAGACATCATAGAAGAAATCACAGATGAAGAAGAGCTGAACGACGAGATCGAAGACTTGGAACAAAATGAGGAAAatataccaacaacaacaaatatcagCATGTCCCATTTTAGCGACAACGAAGATGATTATTTAGCCgataatttaaaaatctcaTTTGAATGTAAATACTGCTATAAATGGAAGAATAGTGCAGCGGAAAATTTCCTAACCCAGCAGGAGCTTTTGGCCCACATTACCAAATGGCACAGTTCGGACCAACCCTATAATTGCCCGTATTGCAAGAAAACTTTTATGGATGCTGCCTCCAGGACCACCCATTTAAAGGATAAACACAGTCAGAAGGTGTACGAGTGTGAGACGTGTGGTAAAAAATATGCcgataaattcaatttaaagaatCATGTTGAAAAGTATCACAGTGGTACGGATTTCGATTGTACCTTGTGCGGCAAGAGTTTTTGCTCCAGTAAAAGTCTAAACTATCACATGAAATGGCACAATCCGGAGGAACAGTTAAAATGCAACTACTGCGATCGTTTGTTTATTAATCAGAGACATTTGAAGGGTCATGAGGAGACTCATACGGGATTTCGTAGTCAGGAGGTTTGTTCGTTTTGTGGGAAAAaCTTCTTTCATTTGAAAACTCTTAGATGGCATATTTATCGTCAGCATGGTGGTGAAAAGCCTTATAAATGTGCCAGATGTACAGAAGTGTTCACCTCATACTTTGAAAAACGTTTACACATGCTGGAATATCACTTGGATAATCTGACGTTGATCGAAAAAACCGAATGTATGCTGTGTCACAAACGTTACGACAATGAGAAGAAACTAAAGGATCATATGTTGGAAGATCACAAGGAAAATAAAGGGGAAgttaaaattgccaacaataaACGTGTAATAATGAATAAGAAACCAAAAAGCTTTACAGGAATATTTCAATGTGAAAAATGTGATAAACGATTTAATATGAAATCGGCTTTAGAAAGACACATGGCAGTGCATTCCACGGAGGGGAGACCTCATGCCTGCCCCCAATGTCCCAAACGCTTTAAACGTTCGCAAGACATGAAATGGCATTTGAAAACACATTCCTCCGAGAAACCCAATATCTGTGATGTTTGCGGCAAGGGATTTGCTTTGAAATACGTGTTGACGCAGCATCGCAGAAGTCATGAAGttttagAAAAGAATTTTACTTGCACCACCTGTGGACGTTCATATCTGTTCGAAAAGTCTTTGCGTCTACATGAACGCATACACAGTGGAAAAACCTTTTATAAATGTGATTTGTGCAGTGAAAATTTTGTTAcgcatattaaatttaaatGgcatatgaaaaaaatgcaCGACAAGGAAGAAGTGGCTGCTACAACTTTAAAtcctaataaaaacaaaactaacattGAGCTGCCATTGGACGATTTGGTCAATATTGTGATTACTTag
- Protein Sequence
- METCRTCAKCDFDNATQWFDLFNAPRWQLETERIHLELNTWKIKISCNDGLPQKICTDCFSKFCTVSSFRLQCLEAQTILSNIFDKIDTQSMQDDEVFEGFANEQDNDILNTVKTATTHMIVAVPIEAATAAEVVQHLKSIEHTLETKAEKSTSSNKNNNNRSNNENISSFSEILNLNPNNNTEVSFRAITKLPDTAVLANENKIQNFNHILVNEEDDINNNNSNNYDEDASTSNLTTLNNNEITTLPKNTNDLDDNDLIEELIEDLDIIEEITDEEELNDEIEDLEQNEENIPTTTNISMSHFSDNEDDYLADNLKISFECKYCYKWKNSAAENFLTQQELLAHITKWHSSDQPYNCPYCKKTFMDAASRTTHLKDKHSQKVYECETCGKKYADKFNLKNHVEKYHSGTDFDCTLCGKSFCSSKSLNYHMKWHNPEEQLKCNYCDRLFINQRHLKGHEETHTGFRSQEVCSFCGKNFFHLKTLRWHIYRQHGGEKPYKCARCTEVFTSYFEKRLHMLEYHLDNLTLIEKTECMLCHKRYDNEKKLKDHMLEDHKENKGEVKIANNKRVIMNKKPKSFTGIFQCEKCDKRFNMKSALERHMAVHSTEGRPHACPQCPKRFKRSQDMKWHLKTHSSEKPNICDVCGKGFALKYVLTQHRRSHEVLEKNFTCTTCGRSYLFEKSLRLHERIHSGKTFYKCDLCSENFVTHIKFKWHMKKMHDKEEVAATTLNPNKNKTNIELPLDDLVNIVIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00045511;
- 90% Identity
- iTF_00045511;
- 80% Identity
- -