Bbay018679.1
Basic Information
- Insect
- Bellardia bayeri
- Gene Symbol
- -
- Assembly
- GCA_950370525.1
- Location
- OX493266.1:99560552-99565605[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.66 54 5.4 2.5 3 23 264 285 262 285 0.89 2 17 0.0069 0.56 11.6 0.5 2 23 307 328 306 328 0.93 3 17 0.3 25 6.4 0.6 2 20 341 359 340 362 0.93 4 17 0.0094 0.76 11.2 3.5 1 23 441 464 441 464 0.94 5 17 0.00016 0.013 16.8 0.6 1 22 471 492 471 492 0.95 6 17 1.1 87 4.7 1.0 2 23 504 526 503 527 0.93 7 17 3.6 2.9e+02 3.0 1.6 2 23 542 563 541 563 0.89 8 17 7.9e-05 0.0064 17.7 5.6 1 23 607 630 607 630 0.98 9 17 0.016 1.3 10.5 0.3 1 23 667 690 667 690 0.97 10 17 0.00027 0.022 16.0 1.2 2 23 746 767 745 767 0.98 11 17 4.8e-05 0.0039 18.4 2.4 1 23 773 795 773 795 0.99 12 17 0.0015 0.12 13.7 0.6 1 23 801 824 801 824 0.97 13 17 0.00068 0.055 14.8 0.3 2 23 873 894 872 894 0.98 14 17 2.8e-06 0.00023 22.3 2.0 1 23 900 922 900 922 0.99 15 17 0.00016 0.013 16.8 0.5 1 23 928 950 928 950 0.99 16 17 5.5e-05 0.0045 18.2 4.1 1 23 956 978 956 978 0.99 17 17 0.65 53 5.4 2.1 2 22 985 1005 984 1008 0.78
Sequence Information
- Coding Sequence
- atgGACAAAACGAGCAGCAATAATAAAACTGAGTGTTTTATAAATGGGATTCAATATAAGTGTCGTACATGCTTTGATCCTGGACAAGCTGTTTACTCCCTTACAGATGAATGCAGCAACTCCAAAACATGGAGTGATTTGTTAAAGGATATTGCTCAGCTTCAGATAAACGATGACGATCTGCTCCCAAGAACTGTATGCTGCAAATGCATGGATAAACTTATAAGTTACTACGATTTTACACTTCAGATACATAAtgtgaataaaaaatactatcAGCTATTGGCATGTAGTAATAATACACTACTGGATGgatgttttaaagaaattggtTATATTAATGACTCCTTAATAGAATCTCATATTGTTCCGCAGTTGGAGCAGAATacacaagaaataaaattggaGGAAGAACAGGTTGTTCCATATGACATTGTTTTGACCAGCAAAAAAGAATTACATGGAGAAAGTGAGaagaaattggaaaataaagACGCTCCTGAGTTCTCTAGCGAGATTTGCAATGATATGCTCAATTCGATCCCAGAAATTCCaagatCTTTAAGTCAACAAAGTAATCAAAGTTCCAACGATAGATACAACGATGACAGAAATGagtccagCTCTTCATCGTTTGATGAATGTGATTATGTGCCTTTAAAAAGATTAAAGAATGAAAAAAGCCACACCAATATCAGAGCTTCTGTTAATAGCCAACCGATCGaacgaaatatatttgaaaaggaTTCAGACTATGATCTAATCGAAAAAGTGAACCGTCGTTTTCTGTGCATTATATGCAAAAAAACTTTCTCATTAAAAAGAAACTGTCTTCGACATATAAAAGCAATACACACTCGTCTAAATGAATCTAGGAAAGTACCAGTGACTTTACCGGCAGTTATTAAGGATGAACTGAAATGTAACATGTGTGATCGTAAATTTGAGGAAAAAACGTTATATCAGGAGCATTTAGTTGCACATTGTAAAAAGAGGACCATATCTGCAAAAACTATAATACGATGTGGACTTTGTGCAAATTCATTTGAAAAACTTCAACATTTACGTCAACACATGCCATTGCATGCCGATGGCAGAACTGCCATCGACTTTAAAggatgtatttatgtaaaatacttTGAAAGTATGAATTCAATTGATTTGATACCACTGCAGCTGCGAATTAAAACTGCCTTTAGCAAATCTCAAATTAGTCGTTTTTACCAAGCCATCGATAAGTACGGCAATGAACTGGACATTTTAGATTCCGATAGTGAAGTAGAGGAAGCAGACGTTGATGATGATAATGTAAAAAAGGAATACAACTGCGAACTTTGCaaggaaatgtttaaaaaacgaaaacttCTATTAAATCACCAACATGAACGACACAATGATGCACTGCTACCCTTCACATGTAAAGACTGCAATGAGCGATATATTAGTTCTGATTTGttacaacaacatttaaaaaagatttgCTTGAATGAACATCGTCGAATAGCTCAACAATGTGATTATTGTAATGATCGTTTCATATGGCCTCAAAATCTGTTGAAGCACAAGGAAATACAGCATCATATGGTCTCACAACCTTCCGCTGGTGTTTCTACCGCTCCTCATTATTGCATCCTGTGCCCGAAAGCATTCTTTAGTGTTGAAGATGTCAAAGATCATTTAAGTCACCATTGTTTGACACCAACTGATGTTATGACCGTTGTAAGATTCGAATTACATTTAGAACTAGATTCTGAAACAGAAGAAGAAAATGAAGAAAACTCGGTACATAATGACAACGATAAAAAACCTTCGTTTCCCTATAAATGTTACATGTGCAGTAAGTCGTTTAAGCGAAAATATCAAGTAGCTCATCATCAGCGATCAATGCATAACTATGAACTGCTAAAGCTAAAATGTGAACGTTGTATTTTTAGAACAGTCTCACAgaatGTTTTAGACTATCATAAAGTCACGCAGTGTTTTAATGTTGAAAAACAATATGAATGTGAGaagtgtaattttaaatttatgtggcAAGAGAATCTTGATAATCACATTAACATAATTCATAATTCAAAAGAATTAGCTGAAGCGCCAGATGTATGGGTTTCTAAAGAGTCCATGCCATCCTACAACAAAAACGATACCAATATTATTGAATACATGGGCTCGAAAAATATTCACAAGatttctaattcaaatatttcCGAACAACCCagtccaaaaacaaaaaagaaatgtcCCATTTGTGGGATTCACTTGTCGATCCAAACTAGTCTTACGTATCACATGAGAACTCACACGGGAGAGAAACCATTCAAGTGTGAATTTTGCGATAAGGCCTTTACTCGTAATAGCGTTTTAGATTATCACCGACGAAAACACACTGGCGAACGTCCGTACAAATGTACGCAATGCGGTAAaggatttttgcaaaaaatcaaaCTAGCTAATCACGTCAACGTGTTTCATACTTCAAAAGAATTAGCCAAACCAACTGATGTTGCAATTTCTAATGAGTCTGtaaccaacaacaacataagCAATATTATCGAATGTATGGACTCGGaagaatttcataatatttccgAAGAAACCAAACCAAAAGGGAAAAAGAAATGTCCCATTTGTGGTGTATACTTGTCGATTCAAACAAGTCTTACGTATCACATGCGAACTCACACGGGCGAGAAACCCTTCAAGTGTGAATTCTGCGAAAAGGCCTTTTCACGTAATAGCGCTTTAGAATATCACCGACGCAAACACACAGGCGAACGACCCTACAAATGTACGCAATGCGGaaaaggatttttggaaaaaGGAAAATTAACGGATCACATCCGCATACACACTGGCGAATGTCCCTACCAGTGCAGATTTTGTCAGAAAAGATTTAGGAAAGCGGACTATTTGAGACTACATTTACGTAAGCATACAGGCGAGAATCTTTGTAGGTGCGAAATTTGCGGTAAAGCATTTTTATGTATCGCATATCTGAAAAAACATCTCAAGTCAAAAGCACATCACATTGACAAAGATTTATTGTAA
- Protein Sequence
- MDKTSSNNKTECFINGIQYKCRTCFDPGQAVYSLTDECSNSKTWSDLLKDIAQLQINDDDLLPRTVCCKCMDKLISYYDFTLQIHNVNKKYYQLLACSNNTLLDGCFKEIGYINDSLIESHIVPQLEQNTQEIKLEEEQVVPYDIVLTSKKELHGESEKKLENKDAPEFSSEICNDMLNSIPEIPRSLSQQSNQSSNDRYNDDRNESSSSSFDECDYVPLKRLKNEKSHTNIRASVNSQPIERNIFEKDSDYDLIEKVNRRFLCIICKKTFSLKRNCLRHIKAIHTRLNESRKVPVTLPAVIKDELKCNMCDRKFEEKTLYQEHLVAHCKKRTISAKTIIRCGLCANSFEKLQHLRQHMPLHADGRTAIDFKGCIYVKYFESMNSIDLIPLQLRIKTAFSKSQISRFYQAIDKYGNELDILDSDSEVEEADVDDDNVKKEYNCELCKEMFKKRKLLLNHQHERHNDALLPFTCKDCNERYISSDLLQQHLKKICLNEHRRIAQQCDYCNDRFIWPQNLLKHKEIQHHMVSQPSAGVSTAPHYCILCPKAFFSVEDVKDHLSHHCLTPTDVMTVVRFELHLELDSETEEENEENSVHNDNDKKPSFPYKCYMCSKSFKRKYQVAHHQRSMHNYELLKLKCERCIFRTVSQNVLDYHKVTQCFNVEKQYECEKCNFKFMWQENLDNHINIIHNSKELAEAPDVWVSKESMPSYNKNDTNIIEYMGSKNIHKISNSNISEQPSPKTKKKCPICGIHLSIQTSLTYHMRTHTGEKPFKCEFCDKAFTRNSVLDYHRRKHTGERPYKCTQCGKGFLQKIKLANHVNVFHTSKELAKPTDVAISNESVTNNNISNIIECMDSEEFHNISEETKPKGKKKCPICGVYLSIQTSLTYHMRTHTGEKPFKCEFCEKAFSRNSALEYHRRKHTGERPYKCTQCGKGFLEKGKLTDHIRIHTGECPYQCRFCQKRFRKADYLRLHLRKHTGENLCRCEICGKAFLCIAYLKKHLKSKAHHIDKDLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -