Bbay017540.1
Basic Information
- Insect
- Bellardia bayeri
- Gene Symbol
- -
- Assembly
- GCA_950370525.1
- Location
- OX493266.1:71271277-71277586[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.036 3 9.3 0.1 2 23 236 258 235 258 0.91 2 15 0.56 45 5.6 0.0 6 23 267 284 267 284 0.96 3 15 0.00019 0.016 16.5 0.4 1 23 290 313 290 313 0.97 4 15 0.0015 0.12 13.7 4.8 1 23 323 345 323 345 0.99 5 15 0.00015 0.012 16.8 4.7 2 23 352 374 351 374 0.92 6 15 0.00012 0.0094 17.2 2.6 1 23 380 402 380 402 0.95 7 15 0.29 24 6.5 3.2 2 23 411 432 411 432 0.96 8 15 6.8e-05 0.0055 17.9 2.0 2 23 438 460 437 460 0.92 9 15 1.9e-06 0.00015 22.8 0.7 2 23 467 488 466 488 0.97 10 15 2.7e-05 0.0022 19.2 6.4 1 23 494 517 494 517 0.96 11 15 6e-05 0.0049 18.1 2.0 1 23 523 545 523 545 0.95 12 15 0.37 30 6.2 3.4 2 23 554 575 554 575 0.96 13 15 0.00014 0.011 17.0 1.2 2 23 581 603 580 603 0.94 14 15 1.1e-05 0.00093 20.3 0.5 2 23 610 631 609 631 0.97 15 15 6.1e-05 0.005 18.1 3.3 1 23 637 660 637 660 0.98
Sequence Information
- Coding Sequence
- atgatCTGTCGTTTATGTTTAAAAGACATTCCAAAAGAATCTAGTattaaattgtatgaaaatttagaCACATCAGACGATTCAATAGAAATGGTCAAGCTAATTGAAAAGTATCTGGAAATCGATATTAAACATAATGACATTGTATCTACTATTATATGCCAAGATTGCTATGATCACTTGGAAGAGTTTCATCGATTTTCGCAACAAGTGGCCGAGAAACAACTAACACTGCGTAATGAGTTTTTGGATGTAAATCTTAAGAAGGAATTTAATTTTGATGACAATGACGATGGTTGGGATAATGATGATCGCGAGGACAAAATTGAAAGAGATCCAAAAGAAACAACACAAGAGATGACCATAAACTGCCCAATAAGTATGTTTAAGGATGAATCAGACGATGACGAAAAAGATGAGCAGGAAATGCCCACTGAGGATTTAATGGATACAGTTATTTGTAATAATGAGAAAGATATTATAGCACCTGACAGTGTTGCTGtcaatgaagatgatgattatATACACAATAAAATTTCTTCAGATGATGATGATGTTccattaataaaactaaaatctagTAAAAAAtcttcacaaaaaaagaaacgtaagaaaacaacagcaaaacctaaagaaaacaaagaaaagaaaCCAGCTAAAAAGAAATTACCTGCACAAGAAGAAGTGGCCATGTTGGTGGACCTAGTATGTGATATTTGCCAAACTCGTGTTGAAACATGGAAAGCTTTAAGGGAACATTTCCTGTTAGCACACACTAAAACACCATATATTAAGTGTTGTGACATTGTTTATCGAAAACCAAGGGAACTTATTGAACATCTTGAGTGGCATAAAAATCCTGATATGTTTAAatgtcaaatttgtgataaaaacATGTCAAGCGCCCGTAATTTAACTATACATATTACATCAGAGCATCCCGATGAAGCAGACTCAGTGGAATTCTACGAGTGTGAACATTGTTCCAAACGTATACGCaattataatttattcaaaaagcATTTGCGGTCCCACAACAAAGATCGGGAAGTTGAGTGTCATATTTGCAATAAAAGattttgctccgaaaataatttaactcGTCATACCTATAACAtgcacaaatatacaaaatatcatGTTTGCGACGTTTGTGgtcaaaagtttaaaaacaaagaatCATTCAAAAGTCATTATGCCCAACATCAAGGTGTAATTGAACCAGCCGCACAATGTTCTATATGCAATAGGTggcttaaaaataaacacagtcTAAGATTGCATAGATTTGTTCATGAGAAACATCCAACCCCGTGTGACACATGTGGAAGAGTGTTTGAGACCAAGCATAGTCTACGCAAACACAAGTCCTACTGGCATAAGTCCGACTTGAATTTACAGTGTAACTTTTGTGAAAAAGTTTTTCGGCAAGAGCGTAATCTGCAAGAGCACATGGCTACACACACAGGAGTGCAGCTTTATAAATGTCCACATTGTCAAAAAGAattttGCTCGGAAAATAATTTAACTCGACATATCCAtaatatacacaaatatattaaatatcacGTCTGCGATGTGTGtggtcaaaaatttaaaaacaaagacTCATTCAAAATTCACTACGCCCAACATCAAGGCATCATTGAACCAGCTGCTCAATGTTCTATATGCCAAAAATggcttaaaaacaaacacacgtTAAGATTGCATCGTTTTGTTCATGAGAAACAGCCAACACCGTGCGACATTTGCGGAAAGCTGTTTGAGACCAAGCATAGATTGCGCCGCCACATATCCTACTGGCATAAGTCGGACTTAAATTTACAATGTAACTTTTGTGAGAAAGTTTTTCGAGAAGAGCGCAACCTACAAGAACATATGGCTACACATACAGGAGTGCAGCTTTATAAATGTCCACATTGTCAAAAAGAGTCACGTTCTAGATCAAATATGTACGCACATATAAAGAGGCAGCATCCAACTGAGTGGTGGAAATCTAAAATGGATCGTTTAAATATAGATCCAAAATCCGGAAATCTTTAA
- Protein Sequence
- MICRLCLKDIPKESSIKLYENLDTSDDSIEMVKLIEKYLEIDIKHNDIVSTIICQDCYDHLEEFHRFSQQVAEKQLTLRNEFLDVNLKKEFNFDDNDDGWDNDDREDKIERDPKETTQEMTINCPISMFKDESDDDEKDEQEMPTEDLMDTVICNNEKDIIAPDSVAVNEDDDYIHNKISSDDDDVPLIKLKSSKKSSQKKKRKKTTAKPKENKEKKPAKKKLPAQEEVAMLVDLVCDICQTRVETWKALREHFLLAHTKTPYIKCCDIVYRKPRELIEHLEWHKNPDMFKCQICDKNMSSARNLTIHITSEHPDEADSVEFYECEHCSKRIRNYNLFKKHLRSHNKDREVECHICNKRFCSENNLTRHTYNMHKYTKYHVCDVCGQKFKNKESFKSHYAQHQGVIEPAAQCSICNRWLKNKHSLRLHRFVHEKHPTPCDTCGRVFETKHSLRKHKSYWHKSDLNLQCNFCEKVFRQERNLQEHMATHTGVQLYKCPHCQKEFCSENNLTRHIHNIHKYIKYHVCDVCGQKFKNKDSFKIHYAQHQGIIEPAAQCSICQKWLKNKHTLRLHRFVHEKQPTPCDICGKLFETKHRLRRHISYWHKSDLNLQCNFCEKVFREERNLQEHMATHTGVQLYKCPHCQKESRSRSNMYAHIKRQHPTEWWKSKMDRLNIDPKSGNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -