Basic Information

Gene Symbol
ct
Assembly
GCA_950370525.1
Location
OX493266.1:12116047-12172508[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 9.6e-27 1e-22 80.7 0.0 3 72 968 1038 966 1043 0.94
2 3 9e-32 9.8e-28 96.8 0.0 3 77 1398 1473 1396 1475 0.96
3 3 9.1e-31 1e-26 93.6 0.0 3 77 1652 1727 1650 1729 0.96

Sequence Information

Coding Sequence
ATGAAGGACATTGACAATaGAGCTACCTTGGCTGAAAAGGAAGTCAATACTCTGAAGGAACAACTATCCACCAACACAACGACTACAGACAGCGACAACAACAACGGCGACTTGGCCTTGGCCACCAGCACAGCCAGCAACAATACACACGACTCAAATACCGAAGACGTCTTGAACGTTTTGTCCACAGAAATCCCACCAAATAAACTACTACTCTCGCCCTCCttcaataataacaatacaaaaCTATTGAATAGTGTGGCCGCTGCTATAACACTACACCAGAACGGTGGTAATCTATTAGCTACAACACCCTCACCCTCGCCACCTCTATCGGACTCGGGCAATCACGTGAGTAATTCACAGGAGGACAATACAGAGCAGCAGCAATTGAACGGCTGCTTGAATcccaaattgtttttcaatcacGCCCAACAGGTAATGATGATGGAGGCAGCAGCTGCTGCAGCGGCCGCCgcggctgctgctgctgctgtgcAACAGCAACAATCGCCCATGCATTCGCCACAACCTGctacacaacaacaacaggaAGTTGAAAAAGCAGCTAATTTATTAGCTAAACCCACCAATATAAAGGAAATCAAAGATAATTTAGATTCCAAATTATTAAGTGATACTCAAACACAGGACAACAATAACCATGCCACACTACATACCGACGAAGAGAAGCAGGATGGAGAAGAGGACTGTGCTGCCAATGCCACTGATTgtagtaataataacaataacataaatagttttaatagtGATACAAACAAACATGTAACAGAGAATTGCACGGAAATGTCTGATAAAACGGACAAAGCACAAGGCACGGAGCAAGAAGATGAGGAGCATATGGATACTGCTGAGGAAGCATTAAGAGGGAAATTATTAGATAATAATAACTTTAAcaatattgaaatgaaaaacaatCATATGGAATTATTAGCTGCCAAAGATAAAGAGATTAAAGCCTTATTCGAAGAAGTTAAACGTTTAAGAAGCGTGGAACAAACACATTTAATACAAATCCATCGATTAGAAGAACATTTGGAAGCCAAACGCCAGCATATAATGCGCTTGGAATCCAAACTGGATAAACAGCAAATTAATGAAGCTCTACAACAAACcatacaacagcagcagcagcagcagtcaGAGCCACACAACTTGGAAACAAATGACAAGGATTGTGAAATGTTAGAGGCTAAAGAAAAATCTGTTGACGAAGTTGCAACACCAGTAGAACATGTAGATGAGGAGGAGGATGAAGTACAGGAAATTGTTAAGGAGAGCAACTGTGATTTAATGCCTCTAGCTAAGGAGAAGTCTGTAAACCATGAACAGGCAGTAGTAGTAGAAGAGGAGGAGGAGGAGgaagacgatgatgatgatgtagtGGTTAGAtcagaaaataatcaaaattccCCAGATTTAGAGGAGTGTACAAATACTAAGGATTCCATTAAAGATATACAAATCAAAAAGGAAACACAATCACCTTTATCTTTAGACTCGATTAGCCAACAAAATGCCATTGCTGCCGCAGCTGCTGCCGCCGCTGCCTGCAATAATGATCCCAATAAATTCCAAGAATTATTAATGGAGCGCACCAAAGCTTTGGTAGCCGCTGAAGCTTTAAAGAACACCGAagCCACAGAAAGTTTAGTTCAAGAAGTGCCCTCAAGTTTAGTTACAAATCAATTAACAAATGTTGCTCAAGCTAATAATAAAGCTAAAAATGCTCAAGATGTTGGGGAACATGTTGAAGCCTCAAAAGTGCCAAAAATTGAAATACTcgacgacgatgatgatgatgaagagcAAGAGCAAGTAcaagaaattgtaaataataaagttgAAACAGCCAAAGCTTCATTAGACAAAACGGCGGATTTATGCTCTAGCATAGATTTAGAGGTTTTGGAGTCTAGCGAAAAGCCTTTGGAGGATGATGAAGAAGTCGCAGCTGAAGCTGAAGACTCTTCTACATTTAAGCAAAATGTCGAACGTTTTGGCACGTTGTTGGGTGAAGAATTGGTGAATACTTATTGGCGCCGTGGCTTTGATGCCACCAAATCTCTGTATAACAATAACTATCATCAACAGCAACATATGCAACAGCAGCATCAACAACAACGCTCtttgcagcagcaacaacagcagcagcatcagcaGCACCAACAACAATTGCTGTTgcaacatcagcaacaacaaccacatCAGCCCatacaacatcatcatcaacagccCTCAACACAAACGCATTTATCACAGCCACCTTGTGGTCCCTCCTCGACCACGTTGCTTAGTCAATTAGTTAATTCTACTTTTTCTACTCCCAACTCTAATACTTCAACTCAATCCTCTTTACGTTCTGCAGATGGTTTTACACACTCCCAAACAGTCTCGTcacaccatcatcatcatctggCGCCACACCATCCacaccaccatcatcatcaccTGCACCATCAATTGCCCGCCCACTTGGCCGATCAGCACGATAAGTCTGCCCTGAATCATCATGACTCGTCGGCCTCCAGTGCCAGCACCCCCAACTTGCAGGAACAACGCAGCAACCATGAGGATCATCACAGTTTATCCTTGAACGGTTCTCTAAAGAATCTAGAAGATAACAACAATAGCTTATGTGCCACACCCACCAGTCATCATATGGCCGCGGGCCATGCCTCACATTTGCCTCATGGCTTTTTGCCAGGTCTACCATTCCAGTTCCAAGAACGTGGCCACTTTCGTTTTGCCGACGATTTGCAATTACCACCCGGCACCTCTATGGCCGGCCGTTTGGGCGAGTCTTTAATACCCAAGGGTGATCCCATGGAGGCCAAATTGCAAGAAATGTTACGCTATAACATGGACAAATATGCCAATCAAGCCTTGGACACTTTGCACATTTCACGGCGCGTACGTGAACTGTTGTCGGTGCACAACATAGGCCAGCGTATCTTTGCCAAGTATATATTGGGTTTGTCGCAGGGTACCGTGTCGGAGCTGCTGTCCAAGCCCAAGCCCTGGGACAAGTTAACAGAGAAGGGACGTGACAGTTATCGTAAAATGCATGCCTGGTCGTGTGATGATAATGCTGTTATGCTACTCAAATCGTTAATACCTAAAAAagATTCTGGTTTACCTCCTTATGGCGCAGGTGGTGGTCGTGATGATTCAATGTCTGATGAACGCATTGCTCATATATTAAATGAGGCTTCTTCGTTAATGAAATCATCAGGTCCTGGGGGCCTGCATCAACAGCATGAACATCAAAGGAGAGCCTCCACTATACCGGAAGATTCACGCAGTAATGATGATTCCAAGTCACCACATCAGCCCTGCTCTTCGCCGTTTTACAAAGAACATCACAGCAAGTCTCAGGGCGAGACTGTTATGCCCGGCCAGGGCCACTTGCGTTCCGACGATATGAATCCTGAAAAAATGGCTAGACTATATCAAGAGCTCATGGCTAGAGCTCCCCGGGAAGCTTTTCCAGGTTTTTTGCTTTCTCCCTTTTTCAGTGGCGGCCTGCCAGCTGCCGCCGGTATGGGTGCCAATGCCTTCCCCGGTTTGGCGGCCGATGACAATATGCGCTTGGCTTTTGAGCGTGAAATGTCGAAattgcaacagcagcagcaacatgcTGCCCAGCCACCCAACTTTGCCAACTTCTCTAGTCTCATGGCTTTGCAGCAGCAAATGTTGAATGGCGCCCAGGATTTATCATTAGGCACCGACGACAAGCCTAGTAAggacaacaacagcaaacttAATGGTCAACGCAACTCTTTTGAGGGTTCCCAGAACTCCCTTAGCAATCATGGCCATACCACACCAAACGCCAAAGATTCCTCTTCCTCAGATGTGGAAAGACTTTATACTGGCATGGTGAAATCGGAACAGGGCAACAAGACCCCCGCTCCCTTGCCTTCCAGCAACAACTCAACCACCAATACCAATTCAGCTGCTCCCAGTCCTCTCAGCAACTCCATACTCCCGCCTGCTATGACTCCCAATGAGGAGTTCTCTGCCACCGCCAGCCCCCTGCAGAGAATGGCCTCCATTACTAATTCATTGATTACCCAGCCACCAGTACCACCTCATCACAATCCTCCCCAAAGACCCACCAAAGCCGTCTTGCCTCCCATTACCCAGCAGCAGTTTGACATGTTCAACAATCTCAACACCGAAGACATAGTGCGCCGTGTCAAAGAGGCTTTATCGCAATATTCCATATCTCAGCGTTTATTTGGCGAATCAGTATTGGGTTTATCTCAGGGTTCCGTCTCCGATCTCTTGGCCCGGCCCAAGCCCTGGCACATGCTAACCCAAAAGGGCCGTGAACCTTTTATACGCatgaaaatgtttttggaaGACGAAAATGCCGTGCACAAACTGGTGGCTTCTCAGTATAAGATTGCGCCCGAAAAGCTAATGAGAACCGGCAACTACAGTGGTTCGCCACAGATACCTCAGGGTTTGGCCAACAAAATGCAAGCATCTCTGCCTATGCAGAAAATGATGAGCGAACTGAAACTGCAAGAACCAGCTCATATCATGCAACAAATGCAGGCTGCTGCCGTGATGTCGGCCGCCATGCAACAACACCAGCAGCAACAGGCAGCTGCAGCCCAGCAAAGTCAACAGCAAGCTGCCCAGGCGGCTGTACAAGCTGCCCAAGCAGCAGCCGCCGCCCAGGCTGCCCAACAGCATCATCAAAGCATGCTGTTGACCTCACCCGGTCTGCCGCCTCAGCACACTATTGCTTTGCCCGCAGCTAACTCACAGCCTTCGTCCGGCAACACCACACCAGCTGGTCCCACACCCGACAAGAAGCCCATGATGATGCCCATACACTCGCCCCACCAAGGCAATGCCATGCGCAATATGCACCAGCATATGTCACCCACCGTTTACGAAATGGCTGCTTTAACCCAAGACTTGGACACTCAGGTTATCACCACCAAAATCAAAGAGGCTTTGTTGACTAACAATATCGGCCAAAAGATATTCGGCGAAGCTGTGTTGGGTTTGTCGCAGGGTTCAGTCTCGGAATTACTCAGCAAACCCAAGCCCTGGCACATGTTGTCCATTAAGGGTAGAGAACCCTTTATACGCATGCAGCTGTGGCTGTCTGATGCCAACAATGTAGAACGTTTGCAGGTTTTGAAGAACGAAAGGCGAGAAGCCTCAAAACGCCGTCGTTCCACGGGACCCAATCAGCAGGATAACAGCTCTGACACTTCCAGCAATGATACCAATGATTTCTACACCAGCAGCCCGGGACCCGGCTCAGTAGGCAGCTCCGGTGCTCCTCCCAATAAAAAGCAACGGGTCTTATTCTCCGAGGAACAAAAAGAGGCCTTAAGACTGGCATTTGCCCTGGATCCTTATCCCAATGTGGGTACCATTGAGTTTTTGGCCAATGAATTGGGTTTGGCCACACGCACCATAACCAACTGGTTCCACAACCATCGCATGCGCTTGAAACAACAAGTGCCACATGGGCCACCCGGTCAAGAAACCAATATACCCACTAGAGAGAACACCAATTCCACACCCTTCGATCCCGTCCAGTTTCGCATTCTATTGCAGCAGAGACTGCTGGAATTGCACAAGGAACGCATGGGCTTGGGAGCCAATACACCGCTGCCCTATCCACCCTACTTTGCGGCGGCCGCTCTGCTAGGCCGTTCTTTGGCCGGCATGCCCGGCACCAATCCCCAAAACGCCTTGCCCACCAATGAGGCCGAATTAAGGGCCTTGAATCAGGCATTTAGAGAACAAATGTCTGGCCTGGACTTGTCCATGAGCTCTTTGAAACGTGAACGTCATGACGACTACGAAGATGACATGGACGAGAGCCATAATATGTCGGAAAACGAAAATGATGATTTGGATGATGAGGACAAAACAAGTGAATATAGAAATGTTGCATTAAACAGCATGAATGCCCAgcagtttttaaacaatatgcGTTCAAATAGAAGAAAACCGGCAGCACCGCAATGGGTTAATCCGGCGGTGCCCACGGCCAGTGAAACAGAACGTATTATTAACGGGGTATGTGTAATGCAAAGCGAGGAGGCAGCtatgcaacagcagcagcacaaCGAGGAGCAGCATAGTAAAGCTCAGGACCAGGAGGAAGACAATGACATGATGATGGACTCGGCTATGCATCAATCGGTCATGGAACCCGAGGTGGTGATCAAACAAGAAAAAGAAGACTGCGAAGAAAGTGATACAGAAAAGACAACCAGCCAGGAGGATAGCAATGCAGCGGCGATGAGTGAGGAACGAATTAAGGTGATACAGGAAGAAAAGCTAAGAATGGTGCGGGTCAATCGTTTAAGCCATGAGGAAGATGAGGCGTTAGCTGTTAGTAATAGCAAAGCAGCAGCagctgcagcagcaacaacagcagcaacagcgtGGAATTATTAG
Protein Sequence
MKDIDNRATLAEKEVNTLKEQLSTNTTTTDSDNNNGDLALATSTASNNTHDSNTEDVLNVLSTEIPPNKLLLSPSFNNNNTKLLNSVAAAITLHQNGGNLLATTPSPSPPLSDSGNHVSNSQEDNTEQQQLNGCLNPKLFFNHAQQVMMMEAAAAAAAAAAAAAAVQQQQSPMHSPQPATQQQQEVEKAANLLAKPTNIKEIKDNLDSKLLSDTQTQDNNNHATLHTDEEKQDGEEDCAANATDCSNNNNNINSFNSDTNKHVTENCTEMSDKTDKAQGTEQEDEEHMDTAEEALRGKLLDNNNFNNIEMKNNHMELLAAKDKEIKALFEEVKRLRSVEQTHLIQIHRLEEHLEAKRQHIMRLESKLDKQQINEALQQTIQQQQQQQSEPHNLETNDKDCEMLEAKEKSVDEVATPVEHVDEEEDEVQEIVKESNCDLMPLAKEKSVNHEQAVVVEEEEEEEDDDDDVVVRSENNQNSPDLEECTNTKDSIKDIQIKKETQSPLSLDSISQQNAIAAAAAAAAACNNDPNKFQELLMERTKALVAAEALKNTEATESLVQEVPSSLVTNQLTNVAQANNKAKNAQDVGEHVEASKVPKIEILDDDDDDEEQEQVQEIVNNKVETAKASLDKTADLCSSIDLEVLESSEKPLEDDEEVAAEAEDSSTFKQNVERFGTLLGEELVNTYWRRGFDATKSLYNNNYHQQQHMQQQHQQQRSLQQQQQQQHQQHQQQLLLQHQQQQPHQPIQHHHQQPSTQTHLSQPPCGPSSTTLLSQLVNSTFSTPNSNTSTQSSLRSADGFTHSQTVSSHHHHHLAPHHPHHHHHHLHHQLPAHLADQHDKSALNHHDSSASSASTPNLQEQRSNHEDHHSLSLNGSLKNLEDNNNSLCATPTSHHMAAGHASHLPHGFLPGLPFQFQERGHFRFADDLQLPPGTSMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRIFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWSCDDNAVMLLKSLIPKKDSGLPPYGAGGGRDDSMSDERIAHILNEASSLMKSSGPGGLHQQHEHQRRASTIPEDSRSNDDSKSPHQPCSSPFYKEHHSKSQGETVMPGQGHLRSDDMNPEKMARLYQELMARAPREAFPGFLLSPFFSGGLPAAAGMGANAFPGLAADDNMRLAFEREMSKLQQQQQHAAQPPNFANFSSLMALQQQMLNGAQDLSLGTDDKPSKDNNSKLNGQRNSFEGSQNSLSNHGHTTPNAKDSSSSDVERLYTGMVKSEQGNKTPAPLPSSNNSTTNTNSAAPSPLSNSILPPAMTPNEEFSATASPLQRMASITNSLITQPPVPPHHNPPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGNYSGSPQIPQGLANKMQASLPMQKMMSELKLQEPAHIMQQMQAAAVMSAAMQQHQQQQAAAAQQSQQQAAQAAVQAAQAAAAAQAAQQHHQSMLLTSPGLPPQHTIALPAANSQPSSGNTTPAGPTPDKKPMMMPIHSPHQGNAMRNMHQHMSPTVYEMAALTQDLDTQVITTKIKEALLTNNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQVLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSGAPPNKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHRMRLKQQVPHGPPGQETNIPTRENTNSTPFDPVQFRILLQQRLLELHKERMGLGANTPLPYPPYFAAAALLGRSLAGMPGTNPQNALPTNEAELRALNQAFREQMSGLDLSMSSLKRERHDDYEDDMDESHNMSENENDDLDDEDKTSEYRNVALNSMNAQQFLNNMRSNRRKPAAPQWVNPAVPTASETERIINGVCVMQSEEAAMQQQQHNEEQHSKAQDQEEDNDMMMDSAMHQSVMEPEVVIKQEKEDCEESDTEKTTSQEDSNAAAMSEERIKVIQEEKLRMVRVNRLSHEEDEALAVSNSKAAAAAAATTAATAWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01109239;
90% Identity
iTF_00199764;
80% Identity
iTF_00199764;