Bant006303.1
Basic Information
- Insect
- Belgica antarctica
- Gene Symbol
- -
- Assembly
- GCA_000775305.1
- Location
- Belgica.1286:2746-4352[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00011 0.0046 16.6 5.5 1 23 97 120 97 120 0.97 2 9 0.00058 0.024 14.4 0.1 3 23 128 148 126 148 0.97 3 9 0.00077 0.032 14.0 1.0 1 23 153 175 153 175 0.97 4 9 0.78 32 4.6 2.3 2 23 179 197 178 197 0.85 5 9 0.0045 0.19 11.6 0.5 3 23 203 222 202 222 0.97 6 9 1.1e-05 0.00047 19.8 1.3 1 23 227 250 227 250 0.97 7 9 0.0034 0.14 12.0 3.0 5 23 259 277 256 277 0.96 8 9 1.2e-05 0.00049 19.7 2.4 1 23 282 305 282 305 0.97 9 9 1.8 74 3.4 0.5 1 8 328 335 328 342 0.80
Sequence Information
- Coding Sequence
- ATGTCTCATAACAAAAATCGCTTCGAACCTTTGGAGTCGATCATCAAAATCGAGCCAGAAGAAttccaagaagaaattttgttccgACCAACTAAAGCAGATGAgtggaaaaaagaagcaaaattATTCTCAGAACCGATCGTGCTTTTGGAACGTCTTCAGTTCGAAGCAACGCCAGAGATAGTCGATACTAAACAAGTTCGAAAGAAAACGACCGAAATTAATGGATCGCATCCAGCTTTTGTGCTTGCAAGGAAAGGCAACGAAGGAATGAAGCGGAAAGACCCTCACACTTGCTGTCtctgcaaaaaagttttttcaactcgaCCTACACTTAAAAACCATCTGAAAAGTGTTCACAACAAAGCGCCAGCGATGATCTGCGATTTGTGTccaaaagtttactttttaaaATCTGTCCTTACAGATCATATGAAAGTTCACAgcacgaaagtttttgcttgcaacATTTGCGACTTCAGGACTGCATACaagataaacttgaaaatgcatAAATCGACGCATGATTTGAGTCAATGTCTGATCTGCAACAAACAAGTGACTTCGTTGACAAATCACATGAAATCACACGCGCCAAAAGTAGCTTGCCCGATCTGCAATAAATCAACGACTCTACAATACATGAAGATACACATCAAGCGACATGACAAAGGCAGATACAAATGCAAGAACTgtgatgaaacttttgaaaacaacgGATTTCTGAGAAACCACGTTTTAAAACAGCACTACGTCGGAAAACTGCACGAGTGTCACTGTGGATCAGTTTTTGCTAACATGTACAATTTGAAAACACATCAATTGACtcacaacgaagaaaaatttccttgcaAGGTTTGCAACAAAAAGTATTCCAACTTTAAGAATTTGAACACTCACTGGAAAAAAGAACATTCGAAGGCACACGGACCATCTTCATCAAGTTACGATAAGCCTGTGGTTCTTCACTATGATGGCCCTTTCAAATGCGACAAATGTGGAGCAACAAAATTCATATCGAAAGAAATTCACAAACCACATGAACTGGAAGCATTCGACAGCACCGATCATTTTTTGCGATTTGTGTCCGCGATCTTTTCACCTGAAGAGTCGACTTTTGGAACACATGACACGAGTGCATCTCAAGCTGCGGTCATTTGCTTGTGA
- Protein Sequence
- MSHNKNRFEPLESIIKIEPEEFQEEILFRPTKADEWKKEAKLFSEPIVLLERLQFEATPEIVDTKQVRKKTTEINGSHPAFVLARKGNEGMKRKDPHTCCLCKKVFSTRPTLKNHLKSVHNKAPAMICDLCPKVYFLKSVLTDHMKVHSTKVFACNICDFRTAYKINLKMHKSTHDLSQCLICNKQVTSLTNHMKSHAPKVACPICNKSTTLQYMKIHIKRHDKGRYKCKNCDETFENNGFLRNHVLKQHYVGKLHECHCGSVFANMYNLKTHQLTHNEEKFPCKVCNKKYSNFKNLNTHWKKEHSKAHGPSSSSYDKPVVLHYDGPFKCDKCGATKFISKEIHKPHELEAFDSTDHFLRFVSAIFSPEESTFGTHDTSASQAAVICL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -