Bant004179.1
Basic Information
- Insect
- Belgica antarctica
- Gene Symbol
- -
- Assembly
- GCA_000775305.1
- Location
- Belgica.45:64592-69849[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.002 0.081 12.7 0.7 1 23 909 932 909 932 0.95 2 13 0.0032 0.13 12.1 1.3 1 23 1041 1063 1041 1063 0.97 3 13 0.0046 0.19 11.6 3.7 2 23 1066 1087 1066 1087 0.97 4 13 0.0091 0.37 10.7 1.6 1 23 1093 1115 1093 1115 0.96 5 13 0.00012 0.005 16.5 3.4 2 23 1122 1144 1121 1144 0.95 6 13 0.029 1.2 9.1 0.1 5 23 1157 1175 1155 1175 0.97 7 13 2.4e-05 0.00099 18.8 2.6 2 23 1181 1203 1180 1203 0.95 8 13 0.38 16 5.6 0.0 3 23 1217 1236 1215 1236 0.96 9 13 0.0029 0.12 12.2 5.8 1 20 1243 1262 1243 1265 0.92 10 13 0.0003 0.012 15.3 0.2 1 23 1273 1295 1273 1295 0.98 11 13 7.3e-06 0.0003 20.4 2.3 1 23 1301 1323 1301 1323 0.97 12 13 0.00013 0.0055 16.4 4.0 1 23 1329 1351 1329 1351 0.98 13 13 0.0021 0.087 12.6 4.6 1 23 1357 1379 1357 1380 0.96
Sequence Information
- Coding Sequence
- ATGGAACAGCAGCAATGTCCAATTTGCATGTTGTACCTGCTGCCTGGGATGAATCTGCAGGATCATCTCGATACGCATCCGAAGGACATGATCATCAAGGCACTGCTGTCAGTCAAGACTGATCCACCAAAGCCAGCTGTAAACAACGATGCAGCTCCAACTGTATTTCTCACCTCCGCACAGTTCAATCCATCTCAAACCCACATCGGTGGCAACACCGTCCTGTTTAACAACCGTCCGTATCGATTGACTCTCGATCCCCCGCAAGCGGTTGCAAAACCAGCAGCCACGACCTTCCTCAATCCGAACTCAAATTACGCGCATCGACAGAGCGCTGGCAATGGCAACGATGGcgatttgtttgataaaaattccGCAGCCTCGTTCCGATGCATTTCACAGAACACGGAACAGAAGAATATCATGATCGTCAACACCAGCAGCACACAGTTCATCCAGCAGACACTACCTGTGAAGAAACCATCGGCCACCGCCATTGAGCTTCATCCCGTCATCATCGACAACTCCGGAATGCCAATCTCGGCCGGTACCGTGCCCAATGCAATTTCCATTCTTCCACGTTACACGAGTGAGAAATATTCAGGTCCACCGCCCTCGTACAGCACAGCCATCTCATCCGTCACTAACACACTAAATGATAAGCCACGAGTCATTGATCTCACACAAACTCCCACAATATCGACCATGAAAATGATGGAGAAGCATTGCGGAAcccacaacaacaacaaattgacGACCTTGAGTGGCAGCGGCGCAGAGGAGAGTCGTCATTTGATGATAAGAGGACCGCCAATGTTAGAATACACACAGAACGAGAACGGCGACTTCATGATCACCGAAAGGCAAATGTCGCCCAATCAACCTTCGACCAATCAACAGTCTCTCACGGTCTCGCACGAAGAAGAAGTGATTGCCGAGAGTCCCGGCACTAGCGCCAGCAAGTACACAATCAAATACGTGGACGTTGACAACCAAGTGACTTTCGATATCACGGACGACGCAGGTGATGGAAAGTTCCAAGATGAACAACAGTTTTTGATCGAAGAGTCACTGTCGACGCATGAAATGATGCAGGAAGATTGTGAAATGGTCGACTGCAGAAGGGAGACACCGATCGTTGCACCGACGAAAAACTATAACGGTGTGAAAGTGTTGAGCAATGTGAAGCTGACGTCGTCGGAGATGTTCTCGCCGTCAATCAAAGACATCATCAAACAGTACAACAATCAGACTGAAAATATGCGCAGAGAAGAGGTGACGGAGGTGGTAAACGAAGACGAGAGACAGGAAGAAGAGTTGCAAGAGCAGTTCTCGAGCATCCACTGCACTGAGACTCTGAATCTCAGCAAAGATAAGGATGACTCGACGGCCTGCACCAGTGTCATTCGCAAGACGAATGTCGAGGCTGAATCCATGCCAGCGCACGTAGAGACTCCGAAGATGGATGAGCCGCAGCCAAGCACGTCTGGTTTGTCTCGCAATTCCAATGTTGtgttcaaaataaatcctCAAAATAGACTGAAAGCAAACAGACAACCAAAAAAGCTGATcgtgaagttgaagaagtctTTGGTGGAGACTGGCGAGTGTTCGTCATCGCTGGCAACCGTTGAGGTGCCGCAAGAGCCTTCAAGAGTCGAATCAGTGGCAATAAAATGCGAAGTTGCTTGCAAAAGCGAGAAAACAGAGATGGAATTGGCACCGACATGCAAGGCTGAGAGCGTGACTGAACACTTTGACACGACGTTCCTAGACACGCACGACTATGAGCACGTAAATACCATCAAAGTGAATCCAGACATCCACCACGACTCTGAGACGAACCAGTCTTGCATGAGCATGGACCTGGAGCCGGAAAATCACACAGTTAAACGCGAACAGGTCGACGATGACTTCccaatcatcatcaaaacCGAAATTAACGCTTGTACATCATCGTCAGTTGTATCAGCGTCTAGCAGCTCGTGTTCAAATTCAAGTCCTGGACCATCGAGGCTAACCGTTGGAAGTTTAACATCAACCAACGACAACTCGCCACTGAAATTCCTTTACCAGAACGACCGCGTTCGCTTTTCTCCGCCGCTGTCTCCTTACGTctatttgaagactttttcatCCACGCAAAGCGACGATCAACCCAAACAGGAGGCGGACATCTCATGGAACGGCAGCAATAGCCTAGCAATACAGAACTCTGACCATAACTCAACCAGCTCGCGCTACACGCCCTCTTTTGACGACAACCGTAGCAATTACACGGATCTCGATGGtggcaacaacaaaaccaACTTGAGCGCTGCCGACGGGCACATCCGAGCGCCATCAACCGATAGTCTGAATATTCGCACTGACGAGAAGATGCCTGCCCGCGGTGAGATTAGCGAACAGGAAAGCAACGGCGAAATTGAACAGCCGTGGCACCATCCCTTTTTCCAGTTGCAAGCTTATCCAAGTTCATACGATTTAAGCACAGCACAGGAGTGTTGGAATCTCTCGAAAGCCGACAGCCAGAACGCTTGTGACTCAAACAACATTCAGAATGTGATAATCAACTTCCCACCGTTGAATTCGCAGGGCGAAGACGTCAAGACGCCCGACTTGCTTAAGACCATCATGCAAACGGTGACCAAGCAAGAGCCGTCCGGCATTAACGACGAAGCGAGTGGAAGCAATAGCAATATGATTGTGAAGCGAAATCGCACGTTCCGTTGTCCCGAATGTTCAAAGTTCTTCGTGAAACTGCGCGCACGCAATCGACACATCGAGCAGGTGCATCCGCATCTGagacgaagcagaaaaagcaaaactgcGCCGACATCCACACAAACCAGCAAATCCGAGACTTCTGTGTTTCCGTCTTCGTCTTCGGCACTAGTGAATTGGACTGCCACGACGACCTCGCAAGAGCAGGAAGTGAAGGTGCTTAGCATCAAAAGCGAACCATCAACGTCAGCCGCAGTCTTAGTGAAGAACGAAATGAACCGAATGCTGATCAGCACAACTGGTTCCATCAAGATGGAGATGGACAGACTTCTGCTGGAGCCATCGACGTCATCCACGACTCAAATATCAACGCTAGGACTTAAAATCAAACGCACCTATATGTGTGCCAAGTGCAATGAACAGTTCCGAACACTGAAGTTGTTGGACAAGCACTTCCAGATCCATCCGGCCGAATGCACCTTGTGCCAAAAAACCTTCAACTCGTGGAACacattttctcttcatcttAAGCATCATCTCAACATTCGGGTTCACGCCTGTCGCTTTTGCCCCAAGCGCTTCGTACAACGACAGAGACTGGTAGAACACGAGCGAGTTCACACCGGATCCATGCCTATCAAATGCCCGCACTGCGATGAACGATTCAGACGCTACTCAAACATGCTGCACCATCGAGCCCGCATTCATCTCAACAAAAAGGCCAAGCAAGAAGACTTCGTGTGTGATTGCGGAGAAATCTATCAAACAAAGGCCAAGCTAGAGTGGCACCAGGAGACTCACGAAAATAAGCCTAAACCATGCCCGTATTGTCGCGAACGATTCACCCATCGCAACTCACTTACCAGACACATCCGACTTTCGCACACCGACAAGTACGTATTTGCCAAGAGCAAGGCCGTGAACTGCCCGATCTGCAGCTCGACGTATCTGCCGTCGAGTATCAAGGCGCACATGGCGACCCACCAGATCTCCAACAAGGAGTACTCGTGCTGCATTTGTAGCAAGCAATTTAGCACAAAATGGAATCTGAAGCAGCATCATTGGACCCATGCAAATCGCAGCACAAAGCCGTTCCAGTGCAATGTGTGTCCGAGTGCATTCGTGCGTGAAACCGACTACACAACTCACATGAACGCCCATCGCTCAATCAAACCGTTTACTTGCAACACGTGCGGAAAAAGGTTTGTGCGGAAGTACAACTGGTTGCGTCACTCGCGTGAGCacgaaagagagaagaaatttgagtGCGAAACCTGCAATAAGAAATTCCATCGTGCTTATTATCTAACTGAGCACAAGAGAGTTCATACAGGCGAACGGCCGTTTTCATGCACAATTTGCGGCAAGACTTCAGCAACAAAGACTAATCACAATAAAcacatcaaaattcatcatGCGCGAGATCCGCTCACCGCCGAGGGCTAA
- Protein Sequence
- MEQQQCPICMLYLLPGMNLQDHLDTHPKDMIIKALLSVKTDPPKPAVNNDAAPTVFLTSAQFNPSQTHIGGNTVLFNNRPYRLTLDPPQAVAKPAATTFLNPNSNYAHRQSAGNGNDGDLFDKNSAASFRCISQNTEQKNIMIVNTSSTQFIQQTLPVKKPSATAIELHPVIIDNSGMPISAGTVPNAISILPRYTSEKYSGPPPSYSTAISSVTNTLNDKPRVIDLTQTPTISTMKMMEKHCGTHNNNKLTTLSGSGAEESRHLMIRGPPMLEYTQNENGDFMITERQMSPNQPSTNQQSLTVSHEEEVIAESPGTSASKYTIKYVDVDNQVTFDITDDAGDGKFQDEQQFLIEESLSTHEMMQEDCEMVDCRRETPIVAPTKNYNGVKVLSNVKLTSSEMFSPSIKDIIKQYNNQTENMRREEVTEVVNEDERQEEELQEQFSSIHCTETLNLSKDKDDSTACTSVIRKTNVEAESMPAHVETPKMDEPQPSTSGLSRNSNVVFKINPQNRLKANRQPKKLIVKLKKSLVETGECSSSLATVEVPQEPSRVESVAIKCEVACKSEKTEMELAPTCKAESVTEHFDTTFLDTHDYEHVNTIKVNPDIHHDSETNQSCMSMDLEPENHTVKREQVDDDFPIIIKTEINACTSSSVVSASSSSCSNSSPGPSRLTVGSLTSTNDNSPLKFLYQNDRVRFSPPLSPYVYLKTFSSTQSDDQPKQEADISWNGSNSLAIQNSDHNSTSSRYTPSFDDNRSNYTDLDGGNNKTNLSAADGHIRAPSTDSLNIRTDEKMPARGEISEQESNGEIEQPWHHPFFQLQAYPSSYDLSTAQECWNLSKADSQNACDSNNIQNVIINFPPLNSQGEDVKTPDLLKTIMQTVTKQEPSGINDEASGSNSNMIVKRNRTFRCPECSKFFVKLRARNRHIEQVHPHLRRSRKSKTAPTSTQTSKSETSVFPSSSSALVNWTATTTSQEQEVKVLSIKSEPSTSAAVLVKNEMNRMLISTTGSIKMEMDRLLLEPSTSSTTQISTLGLKIKRTYMCAKCNEQFRTLKLLDKHFQIHPAECTLCQKTFNSWNTFSLHLKHHLNIRVHACRFCPKRFVQRQRLVEHERVHTGSMPIKCPHCDERFRRYSNMLHHRARIHLNKKAKQEDFVCDCGEIYQTKAKLEWHQETHENKPKPCPYCRERFTHRNSLTRHIRLSHTDKYVFAKSKAVNCPICSSTYLPSSIKAHMATHQISNKEYSCCICSKQFSTKWNLKQHHWTHANRSTKPFQCNVCPSAFVRETDYTTHMNAHRSIKPFTCNTCGKRFVRKYNWLRHSREHEREKKFECETCNKKFHRAYYLTEHKRVHTGERPFSCTICGKTSATKTNHNKHIKIHHARDPLTAEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -