Bant008370.1
Basic Information
- Insect
- Belgica antarctica
- Gene Symbol
- -
- Assembly
- GCA_000775305.1
- Location
- Belgica.243:8192-13113[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0033 0.13 12.0 4.7 1 23 264 286 264 286 0.97 2 11 0.17 7.1 6.6 9.0 1 23 292 314 292 314 0.93 3 11 0.00063 0.026 14.3 9.3 1 23 320 342 320 342 0.98 4 11 4.8e-05 0.002 17.8 2.7 1 23 348 372 348 372 0.96 5 11 0.00013 0.0055 16.4 0.8 1 23 378 400 378 400 0.97 6 11 1e-05 0.00041 20.0 0.1 1 23 406 428 406 428 0.96 7 11 0.00037 0.015 15.0 1.0 1 23 433 455 433 455 0.97 8 11 8e-06 0.00033 20.3 0.4 1 23 460 483 460 483 0.94 9 11 0.00012 0.0047 16.6 3.0 1 23 576 598 576 598 0.97 10 11 0.083 3.4 7.6 6.6 1 23 754 776 754 776 0.95 11 11 0.00019 0.008 15.9 4.1 1 23 786 808 786 808 0.97
Sequence Information
- Coding Sequence
- ATGAGTTCCCACCAGAACCAGGCAAACTCGACGGTTGCGGGCACCTACCAGTACCAATGGGGCGACCAAGTGCTCGAAATTCCGTCAAATATCAATTACcaattggaaaatgttatGTCTGGTGGTGTGCAATACGTACTCTCCGACGGTTCCATTCTCATCCAGCAGAAAGAGAACAAGAAAGACAGCAACAAGAACAGCTATCGGCGGATGATTGTCGTCAACCAACAGGACTTACAGCAAGCGACTACAATTCAAGTGCCTACCCAGCAGCGCGTTATTACGCAACAGACGTCCAATGGTAACGTCGAGACTAAGCAGATCATGGCGACGTCGAGCTCCGTGTCGCCAAGAACACAAGCCATCACGCCCATCGGTCCGCTGACGTTGACGGCCGAAGAGTACAATGAACTGTTGCAACGGAGAATGGAGCGACAGGTCCAGGCTGAGGCTCAAGCACAAGTTGAAGCTCAACAGCGCGCCCAACAAGAGGCTCAACAGCGTGCGCAACAGCAGGAAGCACAGCGAAGAGCTCAGCAGCAATCACAAATACATAATCAGCAGATGCAGGATCATCAAAACATTGCAGTGCAAGTGCAGAAGATTGTGCAGTCTCTCGAGGAAGACGTTGACAAgaaagacgacgacgatgaagacatCGAGATGCAGCTAATCGCCCCCAAGCTCGAGGTGACCGAATCCATCCAGCAGAACCAGAACGAAGGCACCTCAGTAGAGCAGCCTCAATCCAAGCACGGCACTGAAGGAAAATCCGCAGCCGGGCGACCGTTTTCGTGCGAGCAGTGCggcaaaaagtttctgcttaAACATCATTTAACGACACACGCCCGAGTTCACACAGGAGAGCGTCCGCACGTTTGCATTCACTGCGGAAAAGATTTCGCGCACAAACATTGTTTGAACACTCATTTGTTGCTGCATTCAACCGAGAGGCCTTATCAATGTACGGagtgtaaaaaatgtttcacccTGAAACATCATCTCTTGACCCATTCCCGCGTTCACTCCCGAGATCGGCCTTTTGTCTGTCAGGTAAGGGAATGtggaaaaacgttttcgctCAAGCGTCACCTTGTAACTCACATGAAGTTCCATGCTGGCGAAAGGCCATACGTTTGCGAGACTTGCGGAGAAAGttTCGCCCAGGAACAGCATTTGGTAATGCATTCTCGTTTCCACGGCAGTTTGGATCCGTTTGTCTGCCCGGATTGCGGTGCATCGTTCCCGCGCAAGTTCCAGCTGGTGAATCACGGCAAGTTGCACGGTCGCGTCCCGCACGAATGCTCCGTTTGCGGTCAAGAATTTCTGCAGAAGCGAACACTCGTGGCTCATATGCGTCAGCACACAGACGCACCGCACGCCTGCTTAAGCTGTGGTGAAGGTTTCCGAACCAAATCCGAACTAACAGCTCACCAGCGAATAGTTCACAACATTCAGCCTCCGGTCCGCGTTAAGAACGCTTCGGCAACGGCAACCAGTAGCAATCAAGGCATTCAAGAGAGTGAAGTTGACCAGCACTCACAAGAGATCGAAGAACAGCACTTCCTTAAGCAGGAACATCAGCAATACGAGACCATTCAAATCACTCAAGAGCAGCCACAGCAGACCTATCAGACCATCACAATGGTACCTGCTGGCAGCCCCTCGATGGAGCACAAGACAATCCGCATCCAGCAGCACTCGCAACAGAACGTACAGAGTCAACATGTGTGCAACCAGTGCGGCAGCTGTTTCAACAACCGCGAAGCCCTTCAGCTGCATTTGCGCCTGCACACCGGTGACAAGGGTCTTATGACTGATTTATGCGCCCTCACGGCAGCTATTCCCGGGCACATTTTCCAAAGTCAAGGCAACACTTACATCGAAATTGACGGAGGCAAATACAACATAACAAATGGTGCCACTTTGGTGGCGAACAGCGGCGTCGGCGGCGGTTCTCCCGTCCCAGTTCAAATTATAACGCAGGCCAATGGACAGCAAGTCATTGAGCAAGTTCAAAGCATTTCACCGTCGATGCTCCAGCAACAGCATCACTCGCAAGGCGATGTGCAGATGTCACAGCAGCAGCCGATTGTGTACACCACTGTCGCGAGCCAGGATCAAGACTCGCCTGTGGGATCGATCCAGATTGtgcaacaaaatcaaattcaaccTCAAgcacagcagcagcagcagcaacaacaacaatctcATCAAGTCATCGTTCACCACCAGCCGCACCAGCCCAAACCGAAAACACATTTCTGCCAGCATTGCAACAAGGGCTTTGCTGCCAAACATGGCCTGCAATTGCACAACAAGCGCCACCCGAATGGCGAATGCACGGTGAGATCGCACGTCTGCGGCGAATGCAACCGCGCCTTTTTCCAGAAGAACCACTTAATGCTTCACCAACGTCAACACATGGAGCACTCACGCACAGTGCCAGCTGTTCGAATGGAAGAAGTGGAGATCAAGGAAGAAGGAGACGTTCTTGTAAGTCATGATGATACAGCCAACGAAAGTCAAAATCTGCCCGAGGAATCCAACGAGAACCAATCGATTGAGCTACGTGCACAAAATGTAATCATCAGTACGAGTGGTGAAGAGAAAACTGACGGCTCCGAAGACGTACAGATCTCGCACGTTGACGGAGAGAACTCGGTCGGGCAAATAGAATGA
- Protein Sequence
- MSSHQNQANSTVAGTYQYQWGDQVLEIPSNINYQLENVMSGGVQYVLSDGSILIQQKENKKDSNKNSYRRMIVVNQQDLQQATTIQVPTQQRVITQQTSNGNVETKQIMATSSSVSPRTQAITPIGPLTLTAEEYNELLQRRMERQVQAEAQAQVEAQQRAQQEAQQRAQQQEAQRRAQQQSQIHNQQMQDHQNIAVQVQKIVQSLEEDVDKKDDDDEDIEMQLIAPKLEVTESIQQNQNEGTSVEQPQSKHGTEGKSAAGRPFSCEQCGKKFLLKHHLTTHARVHTGERPHVCIHCGKDFAHKHCLNTHLLLHSTERPYQCTECKKCFTLKHHLLTHSRVHSRDRPFVCQVRECGKTFSLKRHLVTHMKFHAGERPYVCETCGESFAQEQHLVMHSRFHGSLDPFVCPDCGASFPRKFQLVNHGKLHGRVPHECSVCGQEFLQKRTLVAHMRQHTDAPHACLSCGEGFRTKSELTAHQRIVHNIQPPVRVKNASATATSSNQGIQESEVDQHSQEIEEQHFLKQEHQQYETIQITQEQPQQTYQTITMVPAGSPSMEHKTIRIQQHSQQNVQSQHVCNQCGSCFNNREALQLHLRLHTGDKGLMTDLCALTAAIPGHIFQSQGNTYIEIDGGKYNITNGATLVANSGVGGGSPVPVQIITQANGQQVIEQVQSISPSMLQQQHHSQGDVQMSQQQPIVYTTVASQDQDSPVGSIQIVQQNQIQPQAQQQQQQQQQSHQVIVHHQPHQPKPKTHFCQHCNKGFAAKHGLQLHNKRHPNGECTVRSHVCGECNRAFFQKNHLMLHQRQHMEHSRTVPAVRMEEVEIKEEGDVLVSHDDTANESQNLPEESNENQSIELRAQNVIISTSGEEKTDGSEDVQISHVDGENSVGQIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00346956; iTF_01353069;
- 90% Identity
- -
- 80% Identity
- -