Bant007055.1
Basic Information
- Insect
- Belgica antarctica
- Gene Symbol
- -
- Assembly
- GCA_000775305.1
- Location
- Belgica.230:32944-36462[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.001 0.043 13.6 5.9 1 23 3 25 3 25 0.96 2 24 0.13 5.3 7.0 0.2 3 23 33 55 31 55 0.86 3 24 0.0014 0.059 13.2 1.1 1 23 63 86 63 86 0.95 4 24 2.3 94 3.1 0.5 3 23 95 113 95 115 0.71 5 24 0.57 23 5.0 0.0 7 23 125 142 119 142 0.89 6 24 1.3e-06 5.5e-05 22.7 1.1 1 23 148 170 148 170 0.98 7 24 0.00077 0.032 14.0 1.3 1 23 203 226 203 226 0.98 8 24 0.0045 0.18 11.6 0.1 1 23 231 253 231 253 0.93 9 24 0.0077 0.32 10.9 0.4 1 23 269 292 269 292 0.94 10 24 0.034 1.4 8.9 5.8 1 23 298 321 298 322 0.93 11 24 0.0002 0.0083 15.8 0.4 1 20 332 351 332 352 0.96 12 24 1.5 62 3.7 0.3 2 23 445 467 444 467 0.94 13 24 0.011 0.45 10.4 5.2 1 23 588 611 588 611 0.96 14 24 0.00018 0.0076 16.0 1.8 2 23 634 656 633 656 0.94 15 24 0.066 2.7 7.9 1.7 3 23 665 686 663 686 0.93 16 24 7.4 3e+02 1.5 0.0 2 19 708 725 707 726 0.77 17 24 4.1 1.7e+02 2.3 1.3 1 23 741 764 741 764 0.93 18 24 0.026 1.1 9.2 1.2 2 23 773 795 773 795 0.94 19 24 0.009 0.37 10.7 0.2 3 23 801 821 800 821 0.95 20 24 0.2 8.2 6.4 0.3 2 23 832 854 831 854 0.95 21 24 0.018 0.75 9.7 2.5 5 23 898 916 895 916 0.94 22 24 0.8 33 4.5 3.8 1 23 924 949 924 949 0.91 23 24 0.039 1.6 8.6 0.6 2 23 955 977 954 977 0.94 24 24 0.0023 0.095 12.5 1.5 1 21 983 1003 983 1004 0.95
Sequence Information
- Coding Sequence
- atgtctttCCAGTGCCACCTTTGCGGCAAAGGTTACACAAacaagtttaattttgaatatCACTACGCACACCATTTCGACGATAGGCCCTTTGCATGCTCCTTGGGAGCATGTTCCAGTGCCTACAAGACCAAAGCCGACCTACGCCAGCATGAAAAATCGCACGAAAAAGCACTTGGGATCAAATTCAACTGTGCTGAatgcaaaactgttttcgaTTCTTCCACTAAGTTGAATGTGCACAAGCGCGATTTCCACACTTTTAAAGAGACTTCCAAATGGTGCGAATTGTGCAACCGGAATTTTGTGAATCTTCGAAACCACAACTTGACAGTGCACGAGAACATTCGTCGGTTTTCCTGTGATTTGGATGGAAAACGTTTCGCTCGGCTGGCAGGTCTTGTTAGGCACATcgagcAAGTTCATCTTAAGTTGTCTCCCTTTCCATGCGAAAAGTGCAGCAAGCAATTCAAGGAAGCCAGCGCACTTAAAAAGCACTTGAGAACGCATCGCAAGTTCTACCAAGAGCAAAAGTTCCCAAAGAAATACATCGTAAATCCTGAAAATTGcagcgaagacgaagaaattttattggaaaaattGAGATTCAAGTGCGGATCATGCAGTCGTAATTATTCTTCAAATGTTCTTCTTATGAATCACCAGAAACGCGATCACGCTAGCGCTCGTTACATTTGCGATATCTGCGGTCAACGATTCATCACTAAACCAAAAATTTCTCTGCACCTTGAAGCTCACCAAAACTGCCATCGACCTCAACAGTTCACCGCCGTGAAGAAATTGTATAAGTGCGGAGTATGCAAGCAGCTGATCAGTTCAAAAAGCGCTTTGGAACGACACAAAAGCAACGTTCACTTTGATATTTACGACTTTATGTGCGAATGTTGCTCAGCAAAATTCCGTGATCGGAGCTCACTGACCAGacaCCAGAACTTGaaacatcacaaaaaaacCGTCGACACATCGTCAGACTTCGCTTGTCCGCACTGTGGGAAGAAACTTGTATCAAATTTTAACTTTGAGCGTCACATAGTGGCTTGCCAGCTGAAGCAAACAGTTGAACAAGAAGCTGTTGACAATGAGTCAAAAACATCGCTAACAAAAAATTGCCGATTGAAAAGACAAGTCAagcaagaagcttttgataCAGTCACCAATCAAACCAACATGGAGGTGGTAGAATTTTATGCTTGGGATGCAAAAATCAAAACCGAACATGAAAAAGACGAAATGATGCAAATTGAGGAGAGGGACCAACGActaagcaaagttttcatgaatcaaGAAGTCGAGCATGGACAGCAGCTGATCCAATGCAAACTGTGCCCAATGCTTCTAGAAACCACCGGAGAATTCAAAAACCATTTTATGTCGTCTCACGTTGCATTTCAAAACGTCGCTTTCAATGGAGCAAAAAAACTAGATAAGCCTGTGATCATCAAAGGACTTGATCAGCCAGCGGTCCGTTTCATTaaactcgaagaaatttcctttATCGACACTTCGGCGGTGAAAgacgaaagagaaagaagTCGATTTGATGATATTTACGAAGGACTCGTACCTGAACATTCTGAGGGCGAGCCTGAAGACTTGGATGAGAATGACTTGTCGCTGATGTTCCAAGGCGAAACCTTCAGTGCTTCCACAAACAGCTTtgattgtaaaatttgtttctctgAGTTTGACAAGCTTGAGCTGCTAAAGTTTCATTGCGTAGAAATGCATCGGATcagtaaatttaaatgcaatcactgcaacttttctttcgagtCGCACCAAGCTATGCAAGTTCACTGGAAAAACTATCACGCAAAAGATGGTTTGTTCAAGAACAGCTTCAATACCAGGAAACTGTCGCTGCCCACTAAAGACGTTACTTGTGAACACTGCGGAAAAATTCTGTCCACTAGAATTTCACTAAAGCGTCATATTCATCTCGTTCATAATAGCGACAGAACCGACCTGTTCTGCGATTTGTGTGCCGAATCATTTAAAGACGTTCGTAAACTGAGAAAGCACTTTACAAAAAGGCATACTGATCTCCTCGACACATCgaacaaacaaatcataaGAAGACGAAAGACAACAAAGCAACTGAATTGCGAAGACTGTGGCGAAGAAGTGTTTGGCCAAATTGGATTGGCACAGCATTGGTGGAACAGCCACATGAgaatcaaaattattgataaaacGCGTTACCATTGCCTTATCTGTAGACAGGTAATGAAAACTAGAGCAACTGCGATGCGACATTACTCCCAAGTGCACCAAGACGGAAAGATCTTGTTGCGAACGTGCCAAGTTTGCAAAATGGACTTTCAGCATTACGAAGAACTTAAATCACATATCGAGCTGTATCACGTCATGGACAACATTTGTCTAATCTGCGGAGTAGGTTTTGATACAAATTTCGACTTGTTCAATCACTCTAAACTCCATCGTGCAGTgccagaaaatgaaaaaaagcttgaatgtGATCTATGTGGTTTCAGAGcccaacaaaagaaaacagtGGAAGTCCATATGTCTAAAAGTCACGGTGCCACAAGAAAATCATACGCCGGAAACACTTGCGAGTATTGCGGAGTGTTCTTCAAATGCTATCAGTCGTTCTACCATCACTTGAAGCACAGCCATTCAAAGCTTCAGGCCAGCGAGTTCAAGTGCCACTGCGGtaaaacatacaaaaacaGCAGAGACTGGCGTAATCACGAGCTGGTGCATTTTAACCCTGAAGaaaaacaattcatttgCCGTCACGATGGATGTGGACGCCAGTACTCTTCTTACTGCAGCTTTAAAGGTCATATTAAGTTTGCCCACGAATCACACCGAAACCAGTGTAGGATCTgccgagaaaactttcagtcACGAAATAAACTGATAACGCATCTTGAGCTGGTACACgcagagacgagaaaattcaaatgttatttctgtcaaaagtcttttaaaacCCAAGCCCCACAGCTGAAGCATATGAAAGTTTGTGCAAATCTGAATTGA
- Protein Sequence
- MSFQCHLCGKGYTNKFNFEYHYAHHFDDRPFACSLGACSSAYKTKADLRQHEKSHEKALGIKFNCAECKTVFDSSTKLNVHKRDFHTFKETSKWCELCNRNFVNLRNHNLTVHENIRRFSCDLDGKRFARLAGLVRHIEQVHLKLSPFPCEKCSKQFKEASALKKHLRTHRKFYQEQKFPKKYIVNPENCSEDEEILLEKLRFKCGSCSRNYSSNVLLMNHQKRDHASARYICDICGQRFITKPKISLHLEAHQNCHRPQQFTAVKKLYKCGVCKQLISSKSALERHKSNVHFDIYDFMCECCSAKFRDRSSLTRHQNLKHHKKTVDTSSDFACPHCGKKLVSNFNFERHIVACQLKQTVEQEAVDNESKTSLTKNCRLKRQVKQEAFDTVTNQTNMEVVEFYAWDAKIKTEHEKDEMMQIEERDQRLSKVFMNQEVEHGQQLIQCKLCPMLLETTGEFKNHFMSSHVAFQNVAFNGAKKLDKPVIIKGLDQPAVRFIKLEEISFIDTSAVKDERERSRFDDIYEGLVPEHSEGEPEDLDENDLSLMFQGETFSASTNSFDCKICFSEFDKLELLKFHCVEMHRISKFKCNHCNFSFESHQAMQVHWKNYHAKDGLFKNSFNTRKLSLPTKDVTCEHCGKILSTRISLKRHIHLVHNSDRTDLFCDLCAESFKDVRKLRKHFTKRHTDLLDTSNKQIIRRRKTTKQLNCEDCGEEVFGQIGLAQHWWNSHMRIKIIDKTRYHCLICRQVMKTRATAMRHYSQVHQDGKILLRTCQVCKMDFQHYEELKSHIELYHVMDNICLICGVGFDTNFDLFNHSKLHRAVPENEKKLECDLCGFRAQQKKTVEVHMSKSHGATRKSYAGNTCEYCGVFFKCYQSFYHHLKHSHSKLQASEFKCHCGKTYKNSRDWRNHELVHFNPEEKQFICRHDGCGRQYSSYCSFKGHIKFAHESHRNQCRICRENFQSRNKLITHLELVHAETRKFKCYFCQKSFKTQAPQLKHMKVCANLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -