Bant006199.1
Basic Information
- Insect
- Belgica antarctica
- Gene Symbol
- -
- Assembly
- GCA_000775305.1
- Location
- Belgica.428:55379-58479[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0038 0.16 11.8 0.1 1 23 153 176 153 176 0.95 2 18 3.1 1.3e+02 2.7 6.4 1 23 228 251 228 251 0.95 3 18 0.013 0.54 10.1 1.5 1 23 258 280 258 280 0.95 4 18 0.12 4.9 7.1 0.6 1 23 290 313 290 313 0.92 5 18 0.025 1 9.3 1.3 1 23 358 380 358 380 0.97 6 18 0.0025 0.1 12.4 0.1 2 23 388 409 387 409 0.94 7 18 0.045 1.8 8.5 0.1 3 23 419 440 418 440 0.94 8 18 0.041 1.7 8.6 7.3 1 23 453 475 453 476 0.95 9 18 0.13 5.3 7.0 0.2 1 23 480 503 480 503 0.96 10 18 0.057 2.3 8.1 0.5 2 23 520 541 519 541 0.96 11 18 0.15 6.2 6.8 3.0 1 23 576 598 576 598 0.92 12 18 0.0024 0.098 12.5 0.2 2 19 608 625 607 630 0.89 13 18 0.2 8.2 6.4 5.2 1 23 636 659 636 659 0.91 14 18 0.0019 0.078 12.8 6.5 1 23 665 687 665 687 0.98 15 18 7.5e-05 0.0031 17.2 1.1 2 23 694 715 693 715 0.96 16 18 4.2e-05 0.0017 18.0 1.8 1 23 722 744 722 744 0.97 17 18 2.9e-05 0.0012 18.5 1.1 1 23 750 773 750 773 0.97 18 18 0.00067 0.028 14.2 0.0 1 21 779 799 779 800 0.97
Sequence Information
- Coding Sequence
- atgaatgagGTGTGCAGGCTGTGTCGGAAGCCTGAAGATGGCAATTTTACGCCGCTTTTTGCACACCGGAACTTCCAGGAAGTCAGCGAGACCGTCGTTGAGGTGTTTCCCGAGTTAAAAATCGAAATGAACGACGATTTGCCGCAAGAAATTTGTGGCGACTGCTTTGAGATCGCGTCCAGTGCCAGCATCCTAAAGAGAATCAGTCTTCAAAGCGAAAACTTCTTTAGATCGCAGCTGGAGTCATTTTTGGTGAAGCAGGAACACGAAACCGAAGAAATCTTGTTGTCAGtcgaagtgaaatttgataaaccAAGTGAAGACAGCTTTGCTGAAGACAACATGCCTGTTCAAAGAAGTGTTCCAGTGAACCGGAAGCGAAAAGCAGAGTCAAGACTTGCTGACGAAGACTTTAGAACGAATTTCACGGTCACAGGCTCGTCTGATTCGTCGTGGTACTCGTGCAACTTCTGTGGTGCTGAGTTCGACTCGGCCGACGAAATTATGCAACACATCGAAAACACTCACAACCCGTTGtcaaaaatctgcaaaattgaattcccCGAAAGCCCTGCTGCTGCAAGCACGTCCAGCGTTCAAatgaaggaaagaaaaacttgggGAAAATACAACCCAAGAAAAGCGCCGGGCAGCGAAGGCCTCGAGTacgaaaaaatttattacttttgcAACTTCTGCGACAGAAAACTCCGCCCGAGGAAGCATGTTTTGTACCACATCAAGCACAAACACGACCCAGACTGCCTTCCACACGCGTGCCGGCAGTGCATTCAACGTTTCACCAGTGCAAGCGAGTTGAAGTCTCACGAGAAGATCCACAAAGGCGGTGATTTAGTTGAGACAGTCTTCACATGCGACATTTGCGGTATCACCGGGCACAGCTTTGAAGGGATGCAAAGACATAAAAACGATGATCACAACGCTGAGAACCCAACGAAGCAACGAAAAGTTGTTGCGCCAGTTGACAACGACGGAGAAGCTGTCCGAACCCAAAAGTTCCATCCAAGACCGCGACCGGGCCCAAAACCCGGAAGAAAGGAACACATTTACTATTCCTGTAGCTTCTGCAACAAAGAACTAAGAAAGACTGCATTGCTGTATCACATGAACGTCAAGCACGACCCAGAAGCACTGCCATCGCCGTGTAGCTTTTGCCCTGAGAGATTTGATTCCGAGGTCAACTTGAAGGCACATGAAGTGAAGCACGAAAGTTCATCACCGTCGACGCTGCTTTGCAATATTTGCGGTGCGTCTGGCATCCGAAAGGACGGAATGGAACACCACATACTTGACGACCACCTCGACAGCGCTGTGCGAGACCAGAAAGACTTTGTTTTCTCGTGCGCTCAGTGCCGATCACGGTTCAAGAACAAGCGATGCCTGCAAGACCACGTTCGACGTCATCACGGCGACCGTTTCAAGTGCGAACAGTGCGCAGacgcttttgaaaacaaaatgagGCTACGACAGCATGTGCTGATCGTTCACGAGAAAGAATGCCGCGAACTGCCAGCGGACGAAGTTAAGAGCGAGAAAAAGTGCTGTGCTTGCTTTGAAGAGTTTGAGACAGCCGCAGATTTGTTGAGTCACTTGGCAACGCACCGAGACAACATCAAACGACTGCTTTGCGACCACAACGTAGCGGTGCCAAGAAGCTTTGATGAGTTCGTCAGCCACGCAAAATATCATTTGATTCCAAAGACTCACGAGTGCCTTCACTGCAAAAAGTCTTTCCCGTTCGACAACAAATTCATCATTCATGTTTCAGGGCACAAAAGATCCAATGTTCACCGCAAAATCAGTTGCCCAAAGTGTGGAAGTCGCTTCCGAAGTGCTGGCGAGCTCGAAACACACGACAAAGTCAAGCACCGCAACGAAACTCTCTTTATTTGCCCGTTTTGTGCAAAATCTTTCTGTTCAAAATCAAGCTGCGACTCGCACATCAAGTTCGTCcacaaaaacgaaaagaaattcgaaTGCAAAGTCTGCAAAATGCGTTTCAACCTCAAATCGCATCTGCACCGCCACGAAACCACCCACTCACGGGAACGGCCGTGTGTGTGCGAGCTATGTGGTAATAGTTTTAAGACCAagGAAGGCTTGGGAATCCATATGAAGCGCCACGATGGTACTTTGAAGAAGTTCGACTGTAGTCAATGCAACTATAAATTTGTGTCTAAAAATCGACTGCAAGTTCACATGATGACGCATTCAGGAGCGAAACCCCATGAATGTGAATTCTGCGACCGTGCCTATACGTCAAAAGGCGACCTGGTGAAGCATCTTCAGAAACTACACGTCGGCAGTGCTGTCTACCGCTGTGAGATGTGCCCAGAAGCCTTTCCGAGGATCGTCGAGCTGAGAGAACATCTGAGAGATTGCATTACGAGAAGAAATTCTGAGCGATGA
- Protein Sequence
- MNEVCRLCRKPEDGNFTPLFAHRNFQEVSETVVEVFPELKIEMNDDLPQEICGDCFEIASSASILKRISLQSENFFRSQLESFLVKQEHETEEILLSVEVKFDKPSEDSFAEDNMPVQRSVPVNRKRKAESRLADEDFRTNFTVTGSSDSSWYSCNFCGAEFDSADEIMQHIENTHNPLSKICKIEFPESPAAASTSSVQMKERKTWGKYNPRKAPGSEGLEYEKIYYFCNFCDRKLRPRKHVLYHIKHKHDPDCLPHACRQCIQRFTSASELKSHEKIHKGGDLVETVFTCDICGITGHSFEGMQRHKNDDHNAENPTKQRKVVAPVDNDGEAVRTQKFHPRPRPGPKPGRKEHIYYSCSFCNKELRKTALLYHMNVKHDPEALPSPCSFCPERFDSEVNLKAHEVKHESSSPSTLLCNICGASGIRKDGMEHHILDDHLDSAVRDQKDFVFSCAQCRSRFKNKRCLQDHVRRHHGDRFKCEQCADAFENKMRLRQHVLIVHEKECRELPADEVKSEKKCCACFEEFETAADLLSHLATHRDNIKRLLCDHNVAVPRSFDEFVSHAKYHLIPKTHECLHCKKSFPFDNKFIIHVSGHKRSNVHRKISCPKCGSRFRSAGELETHDKVKHRNETLFICPFCAKSFCSKSSCDSHIKFVHKNEKKFECKVCKMRFNLKSHLHRHETTHSRERPCVCELCGNSFKTKEGLGIHMKRHDGTLKKFDCSQCNYKFVSKNRLQVHMMTHSGAKPHECEFCDRAYTSKGDLVKHLQKLHVGSAVYRCEMCPEAFPRIVELREHLRDCITRRNSER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -