Basic Information

Insect: Belgica antarctica
Gene Symbol: -
Assembly: GCA_000775305.1
Location: Belgica.1648:1104-3649[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.074 3.1 7.8 5.4 1 21 132 152 132 154 0.94

2 11 2e-05 0.00084 19.0 1.3 1 23 160 182 160 182 0.98

3 11 0.00059 0.024 14.4 1.9 1 23 188 211 188 211 0.96

4 11 0.0016 0.067 13.0 2.6 1 21 217 237 217 239 0.95

5 11 0.0001 0.0043 16.7 1.9 1 23 245 267 245 267 0.99

6 11 5.2e-06 0.00022 20.8 0.6 1 23 273 295 273 295 0.98

7 11 8.3e-05 0.0034 17.1 1.5 1 23 303 326 303 326 0.98

8 11 0.0011 0.044 13.6 2.3 2 23 333 354 332 354 0.97

9 11 0.00015 0.0061 16.3 0.2 1 23 360 382 360 382 0.98

10 11 9.9e-06 0.00041 20.0 2.9 1 23 388 411 388 411 0.96

11 11 3.3e-06 0.00014 21.5 5.2 1 23 425 447 425 447 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.074	3.1	7.8	5.4	1	21	132	152	132	154	0.94
2	11	2e-05	0.00084	19.0	1.3	1	23	160	182	160	182	0.98
3	11	0.00059	0.024	14.4	1.9	1	23	188	211	188	211	0.96
4	11	0.0016	0.067	13.0	2.6	1	21	217	237	217	239	0.95
5	11	0.0001	0.0043	16.7	1.9	1	23	245	267	245	267	0.99
6	11	5.2e-06	0.00022	20.8	0.6	1	23	273	295	273	295	0.98
7	11	8.3e-05	0.0034	17.1	1.5	1	23	303	326	303	326	0.98
8	11	0.0011	0.044	13.6	2.3	2	23	333	354	332	354	0.97
9	11	0.00015	0.0061	16.3	0.2	1	23	360	382	360	382	0.98
10	11	9.9e-06	0.00041	20.0	2.9	1	23	388	411	388	411	0.96
11	11	3.3e-06	0.00014	21.5	5.2	1	23	425	447	425	447	0.96

Sequence Information

Coding Sequence: ATGTCAGTGGGACGTTCAACGCGGTCCGCAAAGGTCAAGGAGGAAAACGAAATTCAGTCGTACATAAACTCCTTCAAGGAGattgaagaacaagaaaacgaaCCAGGCACATCCAGCTCTAAGAAGGAAGTTTATGTAACCGAGGACATGGAAGACGACAACGAGTACGAAGAAGTGCTGGTCAGCGAAGAGCAGGCCAACGATGACGACTACAAGTATGTCTTCATTGTGCAAGATGAAGAAGCGCCCGAGCCAGACGGAGAAATATACGAGTTTGATGAGATGGAAGAAGAGGCCCTGGAAGAGGTCGATGAGAAAccaaaaatcgtaaaaatcgTCAGCACAGGCATCAAGAAACCGACTGGTCTGAACATTCCCTCTCAAGGCAACGTTCATATGTGTTCCTTTTGCAACTACACTACACCAAAACGCTATTTGCTAGCTCGTCATATGAAGTGTCATTCAGAGGACCGACCACACAAATGTAATGTCTGTGAACGCGGCTTCAAAACAGTCGCCAGCTTAACCAACCATGTCAACACTCACACGGGCACGAAGCCACATATGTGCAAATTTTGCGAATCTGCGTTCACAACGTCTGGAGAGCTGGTTCGTCACGTTCGCTACAAGCACACGCATGAAAAGCCGCATAAATGCCCTGAATGCGACTACGCCAGTGTCGAGTTGAGCAAATTGAAGCGACACATCCGTTGCCATACAGGTGAACGTCCGTATCAATGCCCTCACTGCACTTACGCTTCTCCAGACACCTTCAAGCTTAAGCGTCATCTTCGAATTCACACCGGCGAGAAGCCATATCAATGTGACATCTGCCAGGCTCGTTTCACTCAATCAAACTCGCTGAAGGCTCACAAGATGATCCACTCGGTCGGCGAGAAGCCCGTGTTCCAATGTGAACTCTGCCCGACGACGTGCGGCCGCAAAACAGACTTGCGCATTCACATCCAGAAACTCCACACCAGCGACGTTCCCATCAAATGCAAGCGCTGTGACCATGACTTCCCCGACCGCTACAGCTACAAGATCCACGCAAAGACTCACGAAGGTGAAAAGTGTTACCGCTGCGAGCTTTGTCCTTACGCTTCGATCTCAGCTCGGCATTTGGAGTCGCACATGCTGATACATTCGGATCAGAAGCCTTTCAAATGTCAGTACTGCGAGCAGACTTTCCGGCAGAAGCAACTTCTGAGACGTCACGAGAACATCTACCACAATCCCGAGTATGTCGCTGCCGCACCTCGCGAAAAGAATCACAACTGCCCAACATGCCACAAAGCATTCCGCCACAAGGGAAATCTCATGCGACACATCGCTTCCCACGAGACGGGCAATGGCGAAGGCAGATCCCGAGTCAAGACCGAGTCTGGCGAAGAAATGTTGGATGATCAGTATGTGGTCGTTGAAGTGCTTCAAGATGGCACTGAAGAACAATACGAGGATGAAGGTGACGAATTGGAGCTCGATGAAGAGGAGTTGGACGAGGAAATCattgaagaaactgaaaactaCACGTTAACCGAAAACATTGACTCGGACGTCATCATGTCGCTGAAAAACTCGCCGCAAGCTGGAGCGAGTGCCATCTCATTCGGCTTCTCCGAcgatgacgaagacgacgacgcCAAATAA
Protein Sequence: MSVGRSTRSAKVKEENEIQSYINSFKEIEEQENEPGTSSSKKEVYVTEDMEDDNEYEEVLVSEEQANDDDYKYVFIVQDEEAPEPDGEIYEFDEMEEEALEEVDEKPKIVKIVSTGIKKPTGLNIPSQGNVHMCSFCNYTTPKRYLLARHMKCHSEDRPHKCNVCERGFKTVASLTNHVNTHTGTKPHMCKFCESAFTTSGELVRHVRYKHTHEKPHKCPECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYQCDICQARFTQSNSLKAHKMIHSVGEKPVFQCELCPTTCGRKTDLRIHIQKLHTSDVPIKCKRCDHDFPDRYSYKIHAKTHEGEKCYRCELCPYASISARHLESHMLIHSDQKPFKCQYCEQTFRQKQLLRRHENIYHNPEYVAAAPREKNHNCPTCHKAFRHKGNLMRHIASHETGNGEGRSRVKTESGEEMLDDQYVVVEVLQDGTEEQYEDEGDELELDEEELDEEIIEETENYTLTENIDSDVIMSLKNSPQAGASAISFGFSDDDEDDDAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -