Bant004591.1
Basic Information
- Insect
- Belgica antarctica
- Gene Symbol
- -
- Assembly
- GCA_000775305.1
- Location
- Belgica.106:58435-61742[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.036 1.5 8.8 2.3 1 23 184 207 184 207 0.97 2 14 0.0019 0.077 12.8 3.7 1 23 213 235 213 235 0.97 3 14 0.2 8.1 6.4 2.5 1 23 240 263 240 263 0.91 4 14 7.6e-06 0.00031 20.3 1.8 1 23 269 291 269 291 0.97 5 14 0.00058 0.024 14.4 0.4 2 23 298 319 297 319 0.97 6 14 0.00038 0.016 15.0 1.2 1 23 325 348 325 348 0.97 7 14 0.025 1 9.3 0.1 2 23 362 384 361 384 0.89 8 14 2.9e-05 0.0012 18.5 1.3 1 23 587 609 587 609 0.97 9 14 2.2e-06 9e-05 22.0 1.3 3 23 617 637 615 637 0.97 10 14 6.3e-05 0.0026 17.4 0.8 1 23 642 665 642 665 0.95 11 14 0.00023 0.0096 15.7 0.8 1 23 671 693 671 693 0.97 12 14 0.0034 0.14 12.0 3.3 2 23 702 723 701 723 0.97 13 14 0.0005 0.021 14.6 0.9 1 23 729 752 729 752 0.96 14 14 0.0002 0.0084 15.8 0.7 2 23 763 785 763 785 0.94
Sequence Information
- Coding Sequence
- atggaaaagctAGACATGCGAGATCTGGAAAGCTGCTACGTGTGCAATGAGTACATGGGCCCGTTCAAGAACGAGCTCACAGTCGTCACGGGCTACTCCGAGAAGCCGATTTCAGAGATTCTGGAGATGTTTACCGAGTCTAAGATACCCGACACCATTCTCGAAAACTCCGGAATCTGTCAGAACTGCTTCATCAAGTTCAACGAGTACGATGAGCACCAAACATTGGCGCGCCAGATTCAAGATGAGCTGACGCAGCTGTACCGTCGAGAGGCGCCAGACCTAATCGAAGAAAAGGCAGACGTGAAGATCGAGCTGGACGATTGTTATTACGCCTTCGATGAGAACGTCGAGGTGGTCGACTACAATCAGCACATCCAGGAAATCGTTTATGAGGCACCTCCGCCGCCCATGAAGCCAATTAAAACGCAAATACCGCAAATGAAATTGCCGTCAGTTATTATCAAAAGTCCGCGCAAGAGCAACGATTTAAGCAAGACGGACAAGGACGCTGGACTTATGGTGGTCATGGTGAACGGAGTTAAGCACTACAAATGTGACTTCTGCGGCAAGAAGGACTTCACGTCGCGTTCCCGCATCAAGACCCATCGGCTCATCCACACCAGCGAACGGAACTACATGTGCCAGGAATGTGGATCCAGCTTCAAGACCATGAACTGCTTGAAGAACCACTCGCGCTTGCACAATAACATCTTCTACAACTGCGATCTCTGCTCGGCAAGATTCAAGGGCAAGCACGAGCTTCGGTGCCACATGGATGCTATCCACTTGGGCAAGAGAGACCATGTCTGTCAAATATGCGGGAAAGCTTTCTCGAGAGACAAAACTTTGCGACAGCATTTGATGTATCATCTCAACGAGCGAAACATCGTTTGCGAGGTTTGCGGCTTCAAAACGGTGAACAAACCGAAGATGACCCGACATATGAAGAGCCACACAGGCGAGCGAAACTACGAATGTCCGATTTGTCAAAAACGTTTCCTGTACAGCTACAACGTCACTGCGCACATTAAACACGTTCATTACCACGAAAAGAGACCGCAAACTAACGAAGAGAAGCTCATTTGCACAGTCTGCGGAAAGaaattccAAAAGATTTGGAAGGTGAAGGAACACATGGCCGACGTGCACAAGATCGTGGAAACAACCATCGGGTCAGTTTACGCGCGTCAAATGGAGAAAATAGTAACATACAGTCCCGATCACTGCTTCATCTGCAGCGAGATGATGGGTGATCTGAAAAACGACTTGACGGTGGCCACGGCATACTCGGAACGGCCGATTTCAGATCTcatttcGACATTCACAGACACAAATATCACAGAAGAAATCATCGGTGACGCTGGAATCTGCCAGAACTGTTTTATAAAGTTCGACGAGTATGACGAACTGCAAACCAGAGCGGATCAGATCCAGGCTGATCTTGTCTCGCTTTTCGAATCTTCAAACTTGTTGTTGGACGAGAAACCCGTCATTAAAAGCGAGCAGGAACAGATCTTCCACGAAGCGGTCTTCGAGATGATCGACGAAATTCCCAAGGAAGAACAGCTTCTGATGGTCGAAACCGAAGAAGTAGAATACGAGAGCGACCAAATGGTTGTGTCGTACGATTGGTTGAACGAGGAAAGCATCCAAGAAGAAGTTAATCAACCTCAGTTCTTTAAGAAACCGATCCAAAAACCAATCAGAAACGACGAGAACTTTATCGTTATCCAAACTGGATCGAACCAGAAGGTTTTCCAGTGCGAAGTCTGCcgaagaactttcaaagaaCGCAGCAAACTCCGAGCTCATCGCGACATCCACACAACAGAACGGAATGTTATCTGCCCTACCTGCGGAAAAGCCTTCAAAACTCAAGCATGCCTTCGATCTCACAAACGCGTCCATAATCCCACATTCTACCACTGCGACGTGTGTGGAAAAAGTTACACGCAGAAACCAGAAATCGCAAAACACATTAAGTTCGTTCACTTGAACATCCGGGAGTTCTTCTGCGGTACTTGTGGCGCTGGGTTCGGATCCAAGGGCCATCTGTCCACTCACCAGCTTACTCACCAAGACGTCTCAGTCAGAAGCATCGTCTGCCAAGTCTGCTCGCATGGTTTCCACACCAAAGCGAAACTCGATCGACACATGAAATCACACACCAAGGAGAGAAACTATGCGTGTGAGCTCTGCGGAAAGAGATTTTTGTACAGCTACAACGTCACGGCGCACATTCGGCATGTCCATTACAAGGAGCGCCGGAAGGAAGCCGACAGAAGCTGTTCGATATGCGATAAAAAATTCAACAAACTCTGGAAGCTGCGTGATCACATGAGCGAAGTTCATCAAATTGTGGAGGAAATGGAGACCTACGACGCTGAAATCGAGGAAATCATCTGCTAG
- Protein Sequence
- MEKLDMRDLESCYVCNEYMGPFKNELTVVTGYSEKPISEILEMFTESKIPDTILENSGICQNCFIKFNEYDEHQTLARQIQDELTQLYRREAPDLIEEKADVKIELDDCYYAFDENVEVVDYNQHIQEIVYEAPPPPMKPIKTQIPQMKLPSVIIKSPRKSNDLSKTDKDAGLMVVMVNGVKHYKCDFCGKKDFTSRSRIKTHRLIHTSERNYMCQECGSSFKTMNCLKNHSRLHNNIFYNCDLCSARFKGKHELRCHMDAIHLGKRDHVCQICGKAFSRDKTLRQHLMYHLNERNIVCEVCGFKTVNKPKMTRHMKSHTGERNYECPICQKRFLYSYNVTAHIKHVHYHEKRPQTNEEKLICTVCGKKFQKIWKVKEHMADVHKIVETTIGSVYARQMEKIVTYSPDHCFICSEMMGDLKNDLTVATAYSERPISDLISTFTDTNITEEIIGDAGICQNCFIKFDEYDELQTRADQIQADLVSLFESSNLLLDEKPVIKSEQEQIFHEAVFEMIDEIPKEEQLLMVETEEVEYESDQMVVSYDWLNEESIQEEVNQPQFFKKPIQKPIRNDENFIVIQTGSNQKVFQCEVCRRTFKERSKLRAHRDIHTTERNVICPTCGKAFKTQACLRSHKRVHNPTFYHCDVCGKSYTQKPEIAKHIKFVHLNIREFFCGTCGAGFGSKGHLSTHQLTHQDVSVRSIVCQVCSHGFHTKAKLDRHMKSHTKERNYACELCGKRFLYSYNVTAHIRHVHYKERRKEADRSCSICDKKFNKLWKLRDHMSEVHQIVEEMETYDAEIEEIIC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -