Basic Information

Insect: Belgica antarctica
Gene Symbol: -
Assembly: GCA_000775305.1
Location: Belgica.47:1258-3302[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00086 0.035 13.9 2.9 1 23 219 242 219 242 0.96

2 10 0.055 2.3 8.2 0.3 2 22 282 302 281 302 0.94

3 10 1.2e-05 0.00048 19.7 1.1 1 23 310 332 310 332 0.97

4 10 6.2e-07 2.5e-05 23.8 2.3 1 23 356 378 356 378 0.99

5 10 2.3e-07 9.6e-06 25.1 1.5 1 23 384 406 384 406 0.99

6 10 0.0034 0.14 12.0 0.4 1 23 412 436 412 436 0.98

7 10 8.9e-07 3.7e-05 23.3 2.8 1 23 442 464 442 464 0.99

8 10 0.00036 0.015 15.0 0.3 1 23 470 492 470 492 0.98

9 10 3e-05 0.0012 18.5 2.6 1 23 498 520 498 520 0.98

10 10 3.7e-05 0.0015 18.2 1.8 1 23 526 548 526 548 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00086	0.035	13.9	2.9	1	23	219	242	219	242	0.96
2	10	0.055	2.3	8.2	0.3	2	22	282	302	281	302	0.94
3	10	1.2e-05	0.00048	19.7	1.1	1	23	310	332	310	332	0.97
4	10	6.2e-07	2.5e-05	23.8	2.3	1	23	356	378	356	378	0.99
5	10	2.3e-07	9.6e-06	25.1	1.5	1	23	384	406	384	406	0.99
6	10	0.0034	0.14	12.0	0.4	1	23	412	436	412	436	0.98
7	10	8.9e-07	3.7e-05	23.3	2.8	1	23	442	464	442	464	0.99
8	10	0.00036	0.015	15.0	0.3	1	23	470	492	470	492	0.98
9	10	3e-05	0.0012	18.5	2.6	1	23	498	520	498	520	0.98
10	10	3.7e-05	0.0015	18.2	1.8	1	23	526	548	526	548	0.98

Sequence Information

Coding Sequence: ATGGCTTCGTTCTCCTGTGAACTGCTCTGTAGAGCCTGCATGGAGCCCTTTTCTGGTGGTTCAATGCCGCTGatcagcaagaagaagaaccgcAAGACTGAGATCTGCAAAAACTACGAGAGCTTGACGTGTTTGAAgGTGAAAATCACCGACCTTCTGCCCCAGCAACTCTGTCTCACCTGCGTTTCCGAGTTGAACAAGTCATTTACATTTAAAGAGAAGTGCCTTCGAACGAACAATCAGCTAAAGACTTACTTGGACCTGGAATCCGATGACGATGACGAGTTTGAGACCGAGCAGTATGTCATTGAGAATCTCAGCACTCCTGCAAGACCGAAGAGGTCAACCCGCCAGACTCTAGAACATAAAGAGGATCAGTACGAAGAGATTGAGATCACCCAGGAGCTGGTCGATGCGGCAAAAGCGCAGAGTGACAACCAGGACTCTGAAATGGTGCTGGAAGTCGAAGAAATCTGCCACAATCTTCTGAACACTGCGGCTAAGAATGACACAAGTGATAAGAACAACTTTGTCTACATCATTCAGAACATTCCCGGGTCGACGATCGTTGCATCGTCTTTGCAAGTAGATAATAATATGATAGAAGTAGATGATAAGCAAGAAGAAATGATGCCCGAATGTGCCAAGGGCAAATTCAAGTGCACCATTTGCGAAATGGAATTCGTtcgcaagaaaaactttgacaatCACAACAAAAGGTTCCACGAAAACGACGACGAAGGCGAGCCAGACAAGAAAAGGTTGAGACTGCGTTTGACGAACGAGAAAGACACTCAAGATGAACAGTTCAAGCAGAATCTAGAAGAGAACCCGGAGGCTAAGAAGTGTAAAATATGCGGTGCTTTGTACATGAACGAGAAGTCGTTGAAACTCCACGAACGGCGCAATGCATGCAAGCAAAATTCTTATCAGTGTGACATTTGTAACAAAGTCTTCACTGATtctaaaatgttcattgatCACAACAAGAATCACCCACATcagcaagaaaaacaagaagaacagCCACAAGAACCTGAAACCGCTGCCGATCCATCGAAGAAGTTCCAGTGCAACGTATGTTCCCGATCTTTCAAAATGAGTTCGACCCTCAAAGATCATCTCCGCACTCACACCgGAGACAAGCCTTACGTCTGTACAATTTGCAGCCGCGGTTTTTCGCAAAACACGAATCTAAAGCAGCATTTGAGAAGACACACGCAAATAAAGCCGTTCAAATGCAGCTATGACAACTGCACTGCTGCCTTCGTATCTAAAGGCGAGTTAGACTCTCACAATAGGACGCATACAGGCGACCACCCATTCAAATGTGATCAATGCGATACCAAATTCACGACTTCAAGTTCGCTGTTGAAACACAAACGCATTCATTCAGGAGAGAAACCATATGCTTGCGAGTTCTGCCCGCTGCGATTCACGGCTCTGGGAACACTTCGCAACCACGAAAGAACCCATACAGGTCAAAAGCCGCACACATGTCGCTACTGTGAACGCGCTTTTACCCAACGATCAGACATGTCAGCCCACGAAAGAACTCATACTGGAGACCGCCCATACGTCTGCAAAGTGTGCAACTCCGCTTTTCATCAATCTGGAACTCTGAAAACTCACatgaaaatccataaaaaatcAGAAGCTGCCGAGTGA
Protein Sequence: MASFSCELLCRACMEPFSGGSMPLISKKKNRKTEICKNYESLTCLKVKITDLLPQQLCLTCVSELNKSFTFKEKCLRTNNQLKTYLDLESDDDDEFETEQYVIENLSTPARPKRSTRQTLEHKEDQYEEIEITQELVDAAKAQSDNQDSEMVLEVEEICHNLLNTAAKNDTSDKNNFVYIIQNIPGSTIVASSLQVDNNMIEVDDKQEEMMPECAKGKFKCTICEMEFVRKKNFDNHNKRFHENDDEGEPDKKRLRLRLTNEKDTQDEQFKQNLEENPEAKKCKICGALYMNEKSLKLHERRNACKQNSYQCDICNKVFTDSKMFIDHNKNHPHQQEKQEEQPQEPETAADPSKKFQCNVCSRSFKMSSTLKDHLRTHTGDKPYVCTICSRGFSQNTNLKQHLRRHTQIKPFKCSYDNCTAAFVSKGELDSHNRTHTGDHPFKCDQCDTKFTTSSSLLKHKRIHSGEKPYACEFCPLRFTALGTLRNHERTHTGQKPHTCRYCERAFTQRSDMSAHERTHTGDRPYVCKVCNSAFHQSGTLKTHMKIHKKSEAAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -