Bant000523.1
Basic Information
- Insect
- Belgica antarctica
- Gene Symbol
- -
- Assembly
- GCA_000775305.1
- Location
- Belgica.25:247854-250036[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.1e-05 0.0013 18.4 2.1 1 23 25 48 25 48 0.97 2 18 0.11 4.5 7.3 0.6 7 23 59 75 53 75 0.90 3 18 1.7e-05 0.00069 19.3 1.6 2 23 82 103 81 103 0.97 4 18 0.0046 0.19 11.6 1.5 1 23 107 130 107 130 0.93 5 18 0.03 1.2 9.0 2.2 1 23 136 159 136 159 0.96 6 18 0.0049 0.2 11.5 0.2 1 23 169 191 169 191 0.95 7 18 8.5e-05 0.0035 17.0 4.0 1 23 197 219 197 219 0.98 8 18 0.0013 0.054 13.3 4.2 1 21 224 244 224 245 0.95 9 18 0.32 13 5.8 1.4 1 23 353 375 353 375 0.97 10 18 0.001 0.041 13.7 5.0 1 23 381 404 381 404 0.95 11 18 0.04 1.6 8.6 3.0 3 23 421 440 420 440 0.96 12 18 6e-06 0.00025 20.7 0.4 1 23 445 468 445 468 0.96 13 18 0.00012 0.0049 16.6 1.9 1 23 474 496 474 496 0.98 14 18 0.99 41 4.2 0.3 2 23 504 525 503 525 0.92 15 18 0.0035 0.14 12.0 0.2 5 23 537 556 536 556 0.89 16 18 1.1e-05 0.00043 19.9 0.6 1 21 565 585 565 587 0.91 17 18 0.049 2 8.3 0.7 5 23 596 614 595 614 0.93 18 18 0.49 20 5.2 0.5 2 23 620 642 619 642 0.91
Sequence Information
- Coding Sequence
- atgaaaagtttaaagaaatcatcgaaagCCGCTCGCAAGTCAAACAAAGTAGAAACCATTAACAAGCGGAAGTTCCCGTGCAACCAATGCGAGAAGAAGCTGACGTCAGCTGCTCACCTCAAGCGACATCTGAAATCGACTCATACTTTGAAAGACTTTATTTGTGACTTCGACGGCAAGCATTTTAACACAAAAGACAAGCTGCGACTGCACATCTATCTCCACCGGAAGTACTACAGAGTCGAGTGCAATGTATGCCAGAAGGAATACAAAACGAATCAGTCAATGCGAAAACATCTGAGAACTCACTTCGAGAAGCATCAGTGTGAGTCTTGTGGTCAAACCTTTCTTCACAAGCGCCTTCTGAACAATCACATAGCAGCGATTCACAAGGAAGAGCAGAACTTCCAGTGCAATTACTGCACAAGACTCTTTTCGAGCACGACGACCCGAGACTCGCATCAAAAGATCATCCATCAGGACCAGCAAGTCAACACCGGCTACTTCAAGTGTCTCGACTGTCCGCTCGGCTTTGAAATGAAGGAAGAGCTGAGAATCCACAGCTTCATCCACTGGGAGGGTGAGATTCATACGTGCCTGGACTGCAATCAGATCTTCAAGAAGCGAAAACTGCTCAACAATCACATGATGAAGCACGAATTGGCTTCGTTCAAATGCGAAGTTTGTAATCATCATTTTAAGTACCGTTCAAATCTcggaaagcacaaaaaagacGGCCGCTGTAAGGGCCCCTCGGTAGTCGTccaagttgaacttgaaaattcaccGGAAAAAGAAGCTGAGGTGGCGAGGAACCAGCTCTTGCAAATGACGGTTGATCCACGCCGAGTCGTTATCTCGAACATTAAAGATTACAAGCTGCAAAAGTCGGTCAAGGTCGaagtgaaaaaggaaaaaattgatgaaagttCATTGACCTTCGAATCTTATGCTGATGATGTGAGCGCGAACAGTGACGTCTTCGAAGAGTCCGAGTTCGAGCCCCCAGAACCAAGATCGAAGCGatcaacattgaaaagaaaaaccgGGTCAACGTACGAGTGCGATTTGTGTGACTTCACAGCTGATAAAAAATGCGAAATATTATCACATATTCGTTTCCACAGAGCTTCGATACGTCATAGGTGTAAACAATGTGAAGAAACGTTTACGACGAAAGTGAGTTTACACAACCACTCGATGAAAATTCACGGTCGCGGCGTCATGGGCTCGATTGAGTACAGCAGCGGTGCTGCTATTTGTACACTGTGCCATAGAATCTTCAGCCAGGAACGCCTCAAATATCACATGAAACTTCACGAGACTCCGACTTTCTCGTGCGATCGCTGCGGGAAGAAATTCCGCCAAGAAGCAACACTCGCCAAACACATCGCCAGCAACCACGTGAGTGAAAAGCAATTCACTTGCTCGACctgtggaaaaagttttaagaagatGACTGTGCTGAAGCAACACGAAGAAACTCACAATCCATACAAGATTTACGTGCAGTGTGAAATTTGTCAGACGGTGATGCAAATGAAAAGCCTGAAGCTGCACATGGAAGTCAAGCACGGAGACCGGTACaaagacaaaaacttcatttgccAGTGTGGGAAAGCTTTTCGCTACGAGAAGCAGCTGGAGAAGCACGTCGAAGCCGTTCACGACAAAGCTAATCGCGGCAAAATTTATCCGTGCCCTGACTGCGATAAAACTTTTACACGGCGACTGGAACTTCGGGAACATTCATTCGATCACTTcgacggaaaagttttggtgTGCGAGTGCGGAATGAAGTTCAAGAAGCAGAAACTCCTGACGCTTCACTCTGCGGTGCACAAAGCCAGTCAGTGGCCCTGTAGACTTTGTTCGATGACGTTTCAAAGTCGTggaggaagaagaaagcacACGGTCAAGGTGCATGGACACCCAGCGGAAGAGTTTGTGGAAATTCCAAGCTTTGATGCAATGCCTCAAATTAATTAG
- Protein Sequence
- MKSLKKSSKAARKSNKVETINKRKFPCNQCEKKLTSAAHLKRHLKSTHTLKDFICDFDGKHFNTKDKLRLHIYLHRKYYRVECNVCQKEYKTNQSMRKHLRTHFEKHQCESCGQTFLHKRLLNNHIAAIHKEEQNFQCNYCTRLFSSTTTRDSHQKIIHQDQQVNTGYFKCLDCPLGFEMKEELRIHSFIHWEGEIHTCLDCNQIFKKRKLLNNHMMKHELASFKCEVCNHHFKYRSNLGKHKKDGRCKGPSVVVQVELENSPEKEAEVARNQLLQMTVDPRRVVISNIKDYKLQKSVKVEVKKEKIDESSLTFESYADDVSANSDVFEESEFEPPEPRSKRSTLKRKTGSTYECDLCDFTADKKCEILSHIRFHRASIRHRCKQCEETFTTKVSLHNHSMKIHGRGVMGSIEYSSGAAICTLCHRIFSQERLKYHMKLHETPTFSCDRCGKKFRQEATLAKHIASNHVSEKQFTCSTCGKSFKKMTVLKQHEETHNPYKIYVQCEICQTVMQMKSLKLHMEVKHGDRYKDKNFICQCGKAFRYEKQLEKHVEAVHDKANRGKIYPCPDCDKTFTRRLELREHSFDHFDGKVLVCECGMKFKKQKLLTLHSAVHKASQWPCRLCSMTFQSRGGRRKHTVKVHGHPAEEFVEIPSFDAMPQIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -