Basic Information

Insect: Belgica antarctica
Gene Symbol: -
Assembly: GCA_000775305.1
Location: Belgica.12:199018-203277[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.7e-05 0.0011 18.6 0.7 1 23 167 189 167 189 0.95

2 15 0.0013 0.052 13.4 2.8 1 23 195 217 195 217 0.97

3 15 3.2e-05 0.0013 18.4 0.9 1 23 337 359 337 359 0.97

4 15 0.0085 0.35 10.7 0.1 1 23 366 389 366 389 0.94

5 15 1.6e-06 6.6e-05 22.4 2.9 2 23 448 469 448 469 0.98

6 15 0.0061 0.25 11.2 0.0 3 23 496 516 496 516 0.97

7 15 0.028 1.1 9.1 0.5 1 23 522 545 522 545 0.92

8 15 0.021 0.87 9.5 1.8 2 19 553 570 552 571 0.95

9 15 5.5e-05 0.0023 17.6 5.1 1 23 580 602 580 602 0.97

10 15 0.0084 0.34 10.8 1.4 2 23 608 629 607 629 0.96

11 15 2.3e-06 9.4e-05 22.0 0.3 1 23 635 657 635 657 0.98

12 15 0.0038 0.16 11.8 0.2 3 23 665 685 663 685 0.97

13 15 0.00045 0.019 14.7 2.2 1 23 691 713 691 714 0.95

14 15 0.37 15 5.6 0.1 1 23 728 750 728 750 0.96

15 15 0.23 9.5 6.2 0.0 2 20 1022 1040 1021 1043 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.7e-05	0.0011	18.6	0.7	1	23	167	189	167	189	0.95
2	15	0.0013	0.052	13.4	2.8	1	23	195	217	195	217	0.97
3	15	3.2e-05	0.0013	18.4	0.9	1	23	337	359	337	359	0.97
4	15	0.0085	0.35	10.7	0.1	1	23	366	389	366	389	0.94
5	15	1.6e-06	6.6e-05	22.4	2.9	2	23	448	469	448	469	0.98
6	15	0.0061	0.25	11.2	0.0	3	23	496	516	496	516	0.97
7	15	0.028	1.1	9.1	0.5	1	23	522	545	522	545	0.92
8	15	0.021	0.87	9.5	1.8	2	19	553	570	552	571	0.95
9	15	5.5e-05	0.0023	17.6	5.1	1	23	580	602	580	602	0.97
10	15	0.0084	0.34	10.8	1.4	2	23	608	629	607	629	0.96
11	15	2.3e-06	9.4e-05	22.0	0.3	1	23	635	657	635	657	0.98
12	15	0.0038	0.16	11.8	0.2	3	23	665	685	663	685	0.97
13	15	0.00045	0.019	14.7	2.2	1	23	691	713	691	714	0.95
14	15	0.37	15	5.6	0.1	1	23	728	750	728	750	0.96
15	15	0.23	9.5	6.2	0.0	2	20	1022	1040	1021	1043	0.91

Sequence Information

Coding Sequence: ATGGATGATCACAATTTCATCCTTTGGGAACAGGGCGAAGAGCCCACCGACTATGACGAGATCATAGAAAACGACGACATGGATATGAACGACTTGATAGAGGAACAGGTCGAGGGATATGAAGAAGTGAATATGCTCGACGAGGCCTCGGAGACCGACGAAGGATATTACATCGACGAAGAGATGATTCCTGTGCCGCCCGAGAACATGATCTACCTCGCTGACGACCACATCGTCAACGGCAGCGGAGTCGGCATGAGCCATTTAATTGAACAACGCGTCCAAGAAGCCGAAAACAAGATCATCGGCGATCAAGACGTCGACGAAGAATATTCAGCAACCGTCGAAGAAGTCATCACACAAGACTGGCCGCTCGAAGGCGAGGACATGGTGCAAGTGGCAATGGAGCAGGTCGTCACCTCCGACAACTTCCAGGAAGATGACGTAGAAACGGTTCCACTTCACACGGACCAAGACGAATACACAACTTCTCGGCCGTATCCTTGCGACTTCTGCAGCCGACGCTTTCGCAAGAAGGCAAATCTTATGAATCACATGGTGGCGCATCAGAACGTTCGAGCGCACGTCTGCAATCTGTGCGGCTCCCGCTACGTTCGCAAGTGCGATCTTATCAACCATTTGAAGATTCACGCATACAACATCGACGACGAAGCATCGATGGGTGTCTCGAGCACTGGTGGCAAAAAGAAACCGCCGAAGTACGAGCTCGACTTTCTCAACGATACCTACGATGATATACCAGACGACGATGATTTCGATTACAACCACTACTCAAAGCCAACCACATCTACCGCACCAGTTCGTACAAAGGCAccagcgaagaaaaagaaacagcCAGCTAAGAAAACCGCGCCAAAGTTTGAGAAGCTTGCCAAAGACAAGGCGATGCCTAAAGAAGTCAACATTACGTTCGAGGACCACGACAACGAGTACCGCTACAGTCACCACTACGAAGAACGTTTCCCAATAATAGATCCACGCAAACCATTCGTCTGTCAACATTGCGGTGTTGCTTTCACGAGAGAAAAGGCTCTAGAGTCGCATACAAAGCTTCACGCAAGTCAGGAGCCGACATACGACTGCGAAGTTTGCGGTGATTCCTTCTTCGAAAGTTCTTCTCTGGAGGAGCACTTGGAGTTGCGACACGACTTCTCATCACGTATTCGCAAGACTGGCGGGAAAACAACCGCGGGAAAGACTCTACCTCGAACTAAAGTCATGGAGATGCCGGATTACGACGATGACAGCAACTCAGAGTATGATCCTGACAAGAACCACGAAGAAAtcgacgatgatgacgagGAAGAAGACACAGGAAACACTTGTGACAAGTGCCACATGTCGTTCAAGACTCCGGACGCACTGAAACGCCACATCAAAACTCATTTCATCAAGTCGGAGGTGTTGTCAGACAACGACGAAGAAAGCGAGCGACCAGAAACCACCAATGCTGCAACGCTGGGCTGCAATGTCTGCGGTGAAAGCTTTACCGAAGCCCTTGATCTTCTAGCTCACGCCGAGATTCACGCTCGCTTCCAGCCATTCAAGTGCCAGCTGTGCGGTGAAACGTTcttcgaagaaaacaaaatcaaaattcacttGATGGACAATCACCAAGATGAACTGACTGAGTCATCGTGCCGGCTGTGTGGCAAGCAATGTCGAGACCAGCGTTCGCTAATTAAGCACTCGTGGGAACattcgagagagaaaaatcatcCGTGTTCAAAGTgcggaaaaactttccacaacAAGGCGAGACTAAAGCGTCACATCTCGTCTCATCGCAACAAGAGCGTTATGTGCGAAATCTGCCACGAAGAATTCCCAGATGGTCGCCAGCTGATGAACCATCGCCACTCACACACCAAGTCAAACCAGTTTCCCTGCAACGAGTGCGGAAAAACCTTCGGAAGCAGAAGTTCACAACAAATTCACATTCGAATCCACACCGGAGAACGGCCATACGGTTGCAGATTCTGCTGGAAAGCCTTTGCTGACGGTGGGACCTTGCGCAAGCACGAGAGAATTCACACTGGTGAGAAGCCGTATTGCTGTCTCGTCTGCCCGCGAGCCTTCAATCAACGCGTTGTTCTTCGCGAACACATCAGATCACACCACTCAGCTCCAGATCCCGTCAACGGAACGACACTCACGCCATATTACTGTTCACTTTGTGGGGATTTGTTCGCAGTTTCTCTCGATCTGATCCATCACTTAATTGAACACAGCGATCGAAGCACCGCGGCTAAGCGAGTTCAACCAACTGGCCCGAGAAAGTACAAGAGACGCCGAAAGCTCAACGGCGACAGTGATAACAGTGACATGCACACCGCAGAACCAAGCAATCCGCACCGCGCACAGAAAGCAATCAAACAAGAGCCTGTCGACATGCTCGACCTCAAAAAGAACGTTTTGTATCCTGCCTTCCCAATCACCACGGAGCTCAGCGACTTTAAGCTTCCCGATGAAATCTTCCAGTCAGTCGGCAAGCGAATCCCCGTGATCAAGattgaagaagagaagaaatcgGTGATAAGACAGACGGGCACAACTTCGCGcccgaaaatgattttcaccGAGAAAACAAGAGTCGTCGACGGAAAGCGGAAGACCAAAACAATGATTCAAAAGCAAGTTGTTAAATCAAAGCCAAAGCCGCAGACATCGAAAGCCGCCCGCCAGCAGATGCAAGCACCGCCGAGAGATCTGTTCGAACACGACGAATCAAGCGAGACTTGGTCAAACGATGATCCAAACGAAGACGTTCTCGATACTTTAATGAAACGCGAGCGAAAGTTGTCTGAAAAGTTCACGATCGATTTGGTCAACGACTTGCAAGACATTCTGCGATCACCACTCAAGACAAACGAAGATAGAAACCACTCgaatggagaagaagaagactttgaCACAAGTGCAGCAACGCGCCGGCGACAAACTGTCTCACGCATTGGACATAAGCGACCACAGCGAGTGGAGGCTTCGGATGACGAAGAACCACAGCGAGTCATCATCAAACAAGAGGTTATCGAGGGCCTTTCGTGCGGAATTTGTGGCGATTACTTTGATACGCGAGCTCAACTGTTAAATCACGTACCTATCCACATCTAA
Protein Sequence: MDDHNFILWEQGEEPTDYDEIIENDDMDMNDLIEEQVEGYEEVNMLDEASETDEGYYIDEEMIPVPPENMIYLADDHIVNGSGVGMSHLIEQRVQEAENKIIGDQDVDEEYSATVEEVITQDWPLEGEDMVQVAMEQVVTSDNFQEDDVETVPLHTDQDEYTTSRPYPCDFCSRRFRKKANLMNHMVAHQNVRAHVCNLCGSRYVRKCDLINHLKIHAYNIDDEASMGVSSTGGKKKPPKYELDFLNDTYDDIPDDDDFDYNHYSKPTTSTAPVRTKAPAKKKKQPAKKTAPKFEKLAKDKAMPKEVNITFEDHDNEYRYSHHYEERFPIIDPRKPFVCQHCGVAFTREKALESHTKLHASQEPTYDCEVCGDSFFESSSLEEHLELRHDFSSRIRKTGGKTTAGKTLPRTKVMEMPDYDDDSNSEYDPDKNHEEIDDDDEEEDTGNTCDKCHMSFKTPDALKRHIKTHFIKSEVLSDNDEESERPETTNAATLGCNVCGESFTEALDLLAHAEIHARFQPFKCQLCGETFFEENKIKIHLMDNHQDELTESSCRLCGKQCRDQRSLIKHSWEHSREKNHPCSKCGKTFHNKARLKRHISSHRNKSVMCEICHEEFPDGRQLMNHRHSHTKSNQFPCNECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYCCLVCPRAFNQRVVLREHIRSHHSAPDPVNGTTLTPYYCSLCGDLFAVSLDLIHHLIEHSDRSTAAKRVQPTGPRKYKRRRKLNGDSDNSDMHTAEPSNPHRAQKAIKQEPVDMLDLKKNVLYPAFPITTELSDFKLPDEIFQSVGKRIPVIKIEEEKKSVIRQTGTTSRPKMIFTEKTRVVDGKRKTKTMIQKQVVKSKPKPQTSKAARQQMQAPPRDLFEHDESSETWSNDDPNEDVLDTLMKRERKLSEKFTIDLVNDLQDILRSPLKTNEDRNHSNGEEEDFDTSAATRRRQTVSRIGHKRPQRVEASDDEEPQRVIIKQEVIEGLSCGICGDYFDTRAQLLNHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -